Wall clock time and date at job start Tue Mar 31 2020 19:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46684 * 2 1 4 4 C 1.50703 * 109.47184 * 240.00709 * 2 1 3 5 5 H 1.07993 * 119.99865 * 241.35807 * 4 2 1 6 6 C 1.37881 * 119.99779 * 61.35206 * 4 2 1 7 7 N 1.31515 * 119.99984 * 193.96441 * 6 4 2 8 8 Si 1.86800 * 120.00114 * 13.97113 * 6 4 2 9 9 H 1.48496 * 109.47183 * 84.55411 * 8 6 4 10 10 H 1.48503 * 109.47092 * 204.55437 * 8 6 4 11 11 H 1.48500 * 109.47079 * 324.54776 * 8 6 4 12 12 C 1.52992 * 109.47630 * 120.00437 * 2 1 3 13 13 O 1.45205 * 109.47014 * 300.00140 * 12 2 1 14 14 C 1.34751 * 116.99738 * 179.97438 * 13 12 2 15 15 O 1.21500 * 120.00103 * 0.02562 * 14 13 12 16 16 C 1.47473 * 119.99609 * 179.97438 * 14 13 12 17 17 C 1.39822 * 120.08571 * 180.02562 * 16 14 13 18 18 C 1.38054 * 119.90242 * 180.02562 * 17 16 14 19 19 C 1.39610 * 119.98443 * 359.97438 * 18 17 16 20 20 C 1.38838 * 120.06460 * 359.97438 * 19 18 17 21 21 N 1.48011 * 119.88619 * 180.02562 * 20 19 18 22 22 O 1.21805 * 119.99946 * 179.97438 * 21 20 19 23 23 O 1.21801 * 120.00280 * 359.97438 * 21 20 19 24 24 C 1.37781 * 120.22198 * 0.02562 * 20 19 18 25 25 O 1.36346 * 108.58262 * 179.97438 * 19 18 17 26 26 C 1.43959 * 105.53826 * 17.35841 * 25 19 18 27 27 O 1.36540 * 131.43722 * 179.97438 * 18 17 16 28 28 H 1.08999 * 109.47149 * 309.30662 * 1 2 3 29 29 H 1.08993 * 109.47759 * 69.31078 * 1 2 3 30 30 H 1.09004 * 109.46714 * 189.31492 * 1 2 3 31 31 H 1.09008 * 109.46992 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47801 * 300.00127 * 3 2 1 33 33 H 1.09000 * 109.47047 * 60.01098 * 3 2 1 34 34 H 0.96996 * 120.00018 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47469 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.47301 * 59.99798 * 12 2 1 37 37 H 1.08003 * 120.04996 * 0.02562 * 17 16 14 38 38 H 1.07998 * 119.99817 * 179.97438 * 24 20 19 39 39 H 1.09004 * 110.56556 * 214.18118 * 26 25 19 40 40 H 1.09002 * 110.56611 * 91.32617 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6350 -1.6009 -1.1317 6 6 1.7224 -0.2230 -2.4826 7 7 1.9161 -0.9719 -3.5462 8 14 1.0276 1.5011 -2.6682 9 1 2.1417 2.4821 -2.7080 10 1 0.2470 1.5871 -3.9286 11 1 0.1417 1.8044 -1.5157 12 6 2.0401 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4347 14 6 1.9179 -0.5494 3.6274 15 8 2.6189 -1.5406 3.6752 16 6 1.4638 0.0937 4.8744 17 6 1.8385 -0.4362 6.1129 18 6 1.4108 0.1685 7.2780 19 6 0.6059 1.3076 7.2181 20 6 0.2353 1.8335 5.9877 21 7 -0.6177 3.0416 5.9288 22 8 -0.9437 3.5050 4.8506 23 8 -0.9937 3.5725 6.9586 24 6 0.6590 1.2345 4.8215 25 8 0.3226 1.7069 8.4906 26 6 1.2932 1.0494 9.3261 27 8 1.6293 -0.1413 8.5897 28 1 -0.3633 0.6510 0.7952 29 1 -0.3634 0.3630 -0.9613 30 1 -0.3633 -1.0142 0.1663 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6984 -0.6290 -4.4270 35 1 3.1301 -0.7209 1.2493 36 1 1.6768 -1.7490 1.2491 37 1 2.4616 -1.3172 6.1581 38 1 0.3682 1.6464 3.8664 39 1 0.8562 0.7921 10.2911 40 1 2.1732 1.6788 9.4588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764835492.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:39 Heat of formation + Delta-G solvation = -115.379556 kcal Electronic energy + Delta-G solvation = -29203.019172 eV Core-core repulsion = 24760.291786 eV Total energy + Delta-G solvation = -4442.727386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.99801 -43.10597 -41.71490 -39.45184 -38.39891 -37.93259 -37.65657 -36.80891 -33.85072 -33.22071 -32.09071 -28.34083 -27.96349 -27.86204 -27.18948 -26.95804 -25.62128 -24.16160 -22.71364 -21.02762 -20.73460 -20.15755 -19.69169 -19.04384 -18.69347 -18.59195 -18.15993 -17.89906 -17.56039 -17.51020 -17.16639 -16.78453 -15.91237 -15.56824 -15.19098 -15.08632 -14.81424 -14.71574 -14.45361 -14.27183 -14.15245 -13.86136 -13.70931 -13.52445 -13.33829 -12.80905 -12.49109 -12.41567 -12.40611 -12.35876 -12.27329 -11.98973 -11.86254 -11.81134 -11.47839 -11.05552 -10.97610 -10.61310 -10.40000 -9.77189 -8.32341 -6.34594 -1.56528 -1.00792 -0.09146 0.03811 0.87836 1.09837 1.38289 1.41791 1.42566 1.52118 1.91472 2.02028 2.34636 2.59273 2.96282 3.04665 3.24108 3.37095 3.49459 3.70364 3.86190 4.02853 4.03779 4.16852 4.17067 4.27245 4.42885 4.49970 4.52637 4.60969 4.83404 4.87169 4.96455 5.00291 5.14526 5.17064 5.36888 5.42055 5.48154 5.67868 5.75311 6.26161 6.33423 6.49219 6.69566 7.31183 8.84027 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.018361 B = 0.003017 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.579746 B = 9277.769678 C =10577.079299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.038 3.962 3 C -0.148 4.148 4 C -0.521 4.521 5 H 0.037 0.963 6 C 0.025 3.975 7 N -0.942 5.942 8 Si 0.937 3.063 9 H -0.280 1.280 10 H -0.314 1.314 11 H -0.209 1.209 12 C 0.106 3.894 13 O -0.341 6.341 14 C 0.515 3.485 15 O -0.519 6.519 16 C -0.106 4.106 17 C 0.019 3.981 18 C 0.036 3.964 19 C 0.138 3.862 20 C -0.052 4.052 21 N 0.032 4.968 22 O -0.165 6.165 23 O -0.158 6.158 24 C 0.018 3.982 25 O -0.287 6.287 26 C 0.198 3.802 27 O -0.294 6.294 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.073 0.927 34 H 0.266 0.734 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.184 0.816 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 5.944 28.687 29.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.037 3.963 3 C -0.204 4.204 4 C -0.558 4.558 5 H 0.055 0.945 6 C -0.173 4.173 7 N -0.580 5.580 8 Si 0.767 3.233 9 H -0.207 1.207 10 H -0.243 1.243 11 H -0.133 1.133 12 C 0.033 3.967 13 O -0.257 6.257 14 C 0.360 3.640 15 O -0.410 6.410 16 C -0.109 4.109 17 C 0.000 4.000 18 C -0.009 4.009 19 C 0.088 3.912 20 C -0.136 4.136 21 N 0.550 4.450 22 O -0.378 6.378 23 O -0.374 6.374 24 C -0.001 4.001 25 O -0.200 6.200 26 C 0.089 3.911 27 O -0.210 6.210 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.201 0.799 38 H 0.205 0.795 39 H 0.200 0.800 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.152 5.000 28.751 29.205 hybrid contribution -0.146 0.575 -0.812 1.005 sum -1.298 5.575 27.939 28.519 Atomic orbital electron populations 1.22193 0.96025 1.00732 1.00850 1.18542 0.94134 0.93345 0.90262 1.22271 1.00903 0.96850 1.00402 1.20927 1.33416 1.11379 0.90110 0.94514 1.25716 0.95169 1.01229 0.95218 1.70078 1.50364 1.38157 0.99443 0.86433 0.79603 0.80377 0.76935 1.20728 1.24343 1.13260 1.23122 0.98447 0.95246 0.79869 1.86494 1.69226 1.55434 1.14520 1.20667 0.77262 0.81629 0.84429 1.90878 1.36109 1.25754 1.88255 1.18349 1.04048 0.97669 0.90802 1.20482 0.94230 0.99287 0.85968 1.19084 1.00419 0.94288 0.87142 1.19675 0.92565 0.92997 0.85934 1.19964 1.07836 0.93185 0.92662 1.43500 0.99502 1.01442 1.00568 1.94603 1.59944 1.66124 1.17174 1.94581 1.57307 1.61593 1.23941 1.21216 0.89663 0.91174 0.98078 1.87614 1.53004 1.67044 1.12360 1.26666 0.91621 0.79468 0.93386 1.87524 1.84551 1.36863 1.12053 0.91762 0.93768 0.93808 0.93136 0.94882 0.90796 0.92493 0.91804 0.92074 0.79882 0.79464 0.80020 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 7.58 71.98 0.55 -4.95 16 2 C 0.04 1.60 0.58 -52.93 -0.03 1.57 16 3 C -0.15 -5.65 7.55 71.98 0.54 -5.11 16 4 C -0.52 -27.91 8.62 25.60 0.22 -27.69 16 5 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 6 C 0.02 1.39 5.32 84.66 0.45 1.84 16 7 N -0.94 -57.35 13.96 21.45 0.30 -57.05 16 8 Si 0.94 42.81 22.79 68.60 1.56 44.38 16 9 H -0.28 -12.52 7.10 99.48 0.71 -11.81 16 10 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 11 H -0.21 -8.32 4.65 99.48 0.46 -7.86 16 12 C 0.11 3.95 4.26 71.98 0.31 4.26 16 13 O -0.34 -10.27 8.30 -56.62 -0.47 -10.74 16 14 C 0.52 13.75 7.89 70.26 0.55 14.31 16 15 O -0.52 -16.35 16.13 19.83 0.32 -16.03 16 16 C -0.11 -2.07 5.87 -20.10 -0.12 -2.19 16 17 C 0.02 0.30 9.60 22.61 0.22 0.51 16 18 C 0.04 0.53 7.14 22.56 0.16 0.69 16 19 C 0.14 2.36 6.76 22.74 0.15 2.52 16 20 C -0.05 -1.06 6.85 36.41 0.25 -0.81 16 21 N 0.03 0.81 4.45 -46.38 -0.21 0.60 16 22 O -0.16 -4.43 18.43 18.88 0.35 -4.09 16 23 O -0.16 -4.17 18.04 23.79 0.43 -3.74 16 24 C 0.02 0.34 9.11 22.52 0.21 0.55 16 25 O -0.29 -4.22 10.50 -68.95 -0.72 -4.94 16 26 C 0.20 1.09 8.88 113.37 1.01 2.10 16 27 O -0.29 -3.30 11.41 -76.52 -0.87 -4.18 16 28 H 0.06 2.11 7.94 -2.39 -0.02 2.09 16 29 H 0.04 1.82 4.30 -2.39 -0.01 1.81 16 30 H 0.04 1.68 8.12 -2.38 -0.02 1.66 16 31 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.03 1.33 2.25 -2.39 -0.01 1.32 16 33 H 0.07 2.35 7.68 -2.39 -0.02 2.33 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.18 2.43 7.64 -2.91 -0.02 2.40 16 38 H 0.19 3.54 7.13 -2.91 -0.02 3.52 16 39 H 0.18 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -69.73 340.95 6.02 -63.71 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: 0.87 Total: 4.48 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 4.47 Total: -12.40 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.09 Total: -56.45 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.97 Total: -43.72 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.56 Total: 44.38 kcal Total: -69.73 6.02 -63.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764835492.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.674 kcal (2) G-P(sol) polarization free energy of solvation -69.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds