Wall clock time and date at job start Tue Mar 31 2020 19:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35236 * 126.06514 * 2 1 4 4 C 1.40416 * 107.86685 * 180.26963 * 3 2 1 5 5 N 1.40156 * 125.97645 * 179.74375 * 4 3 2 6 6 C 1.34780 * 119.99719 * 359.97438 * 5 4 3 7 7 O 1.21293 * 120.00326 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99860 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47205 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.54231 * 303.59703 * 9 8 6 11 11 S 1.82367 * 110.60988 * 66.45616 * 9 8 6 12 12 C 1.77242 * 94.48960 * 118.51611 * 11 9 8 13 13 N 1.30281 * 126.27945 * 179.97438 * 12 11 9 14 14 N 1.37058 * 107.44848 * 359.97438 * 12 11 9 15 15 C 1.32213 * 120.27713 * 0.02562 * 14 12 11 16 16 O 1.21254 * 122.87500 * 180.02562 * 15 14 12 17 17 N 1.31216 * 108.05127 * 359.75634 * 4 3 2 18 18 N 1.34963 * 126.07246 * 179.85732 * 2 1 3 19 19 C 1.46506 * 125.97330 * 359.97438 * 18 2 1 20 20 C 1.50700 * 109.46957 * 269.71244 * 19 18 2 21 21 H 1.08002 * 119.99770 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00083 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 300.00001 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00094 * 24 22 20 28 28 H 1.09000 * 109.46971 * 270.14271 * 1 2 3 29 29 H 1.09003 * 109.47568 * 30.13981 * 1 2 3 30 30 H 1.08996 * 109.47028 * 150.14486 * 1 2 3 31 31 H 1.07998 * 126.07376 * 0.04826 * 3 2 1 32 32 H 0.97000 * 120.00031 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47258 * 300.00941 * 8 6 5 34 34 H 1.09007 * 109.46617 * 60.00374 * 8 6 5 35 35 H 0.96997 * 120.00338 * 179.97438 * 13 12 11 36 36 H 0.96995 * 119.85975 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47197 * 149.71632 * 19 18 2 38 38 H 1.08998 * 109.47414 * 29.71313 * 19 18 2 39 39 H 0.97005 * 119.99661 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0932 0.0000 4 6 3.6371 0.6547 -0.0063 5 7 4.7734 1.4750 -0.0134 6 6 4.6365 2.8158 -0.0152 7 8 3.5300 3.3126 -0.0102 8 6 5.8584 3.6980 -0.0234 9 6 5.4276 5.1660 -0.0233 10 1 4.7731 5.3727 -0.8701 11 16 4.6014 5.5923 1.5456 12 6 5.7977 6.8171 2.0041 13 7 5.7849 7.5395 3.0882 14 7 6.7389 6.8651 1.0089 15 6 6.6349 6.0742 -0.0455 16 8 7.4399 6.0770 -0.9523 17 7 3.6337 -0.6575 -0.0046 18 7 2.3017 -1.0909 0.0027 19 6 1.8501 -2.4846 0.0067 20 6 1.7025 -2.9607 1.4289 21 1 1.9227 -2.2919 2.2478 22 6 1.2865 -4.2500 1.6846 23 7 1.0188 -5.0646 0.6874 24 14 1.1029 -4.8400 3.4475 25 1 0.6453 -6.2527 3.4515 26 1 2.4121 -4.7413 4.1413 27 1 0.1048 -3.9949 4.1509 28 1 -0.3633 0.0026 1.0277 29 1 -0.3634 0.8887 -0.5160 30 1 -0.3633 -0.8912 -0.5116 31 1 1.9719 2.1211 0.0007 32 1 5.6583 1.0778 -0.0178 33 1 6.4586 3.4956 0.8636 34 1 6.4489 3.4923 -0.9164 35 1 6.4897 8.1863 3.2484 36 1 7.4843 7.4817 1.0784 37 1 2.5820 -3.1052 -0.5100 38 1 0.8888 -2.5565 -0.5021 39 1 1.1138 -4.7581 -0.2281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768047163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:16 Heat of formation + Delta-G solvation = 37.660394 kcal Electronic energy + Delta-G solvation = -25565.515658 eV Core-core repulsion = 21636.762956 eV Total energy + Delta-G solvation = -3928.752702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47183 -40.88604 -39.56480 -37.61383 -35.15595 -34.15053 -33.74827 -32.91355 -31.55248 -30.79989 -27.32121 -26.50870 -25.91882 -24.40059 -23.19019 -22.11048 -21.08392 -20.02863 -19.55094 -18.75855 -18.60076 -17.35701 -17.01416 -16.64292 -16.45025 -16.10633 -15.90152 -15.30423 -15.06837 -14.57101 -14.08920 -13.92156 -13.83291 -13.43297 -13.25759 -13.22587 -12.65213 -12.54407 -12.45752 -12.23562 -11.89808 -11.63197 -11.58030 -11.20614 -11.08670 -10.78725 -10.54715 -10.37365 -10.20739 -10.19335 -10.11952 -9.79312 -9.09759 -8.61770 -8.52039 -8.08952 -7.57629 -6.62125 -4.38438 0.47637 0.79826 1.16715 1.97089 2.07285 2.18157 2.59100 2.75135 3.24558 3.34992 3.36267 3.54935 3.55436 3.68392 3.83895 4.36157 4.38101 4.52676 4.60213 4.87151 4.99695 5.10847 5.29211 5.41558 5.55769 5.76785 5.95889 5.99509 6.08459 6.30185 6.36881 6.52271 6.61986 6.72565 6.78503 7.27034 7.28930 7.43703 7.64275 7.78880 7.98401 8.25479 8.50287 8.53817 9.30451 10.74421 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002286 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.550784 B =12243.678947 C =12591.161938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.286 4.286 4 C 0.263 3.737 5 N -0.625 5.625 6 C 0.522 3.478 7 O -0.507 6.507 8 C -0.117 4.117 9 C -0.107 4.107 10 H 0.164 0.836 11 S 0.049 5.951 12 C 0.369 3.631 13 N -0.660 5.660 14 N -0.692 5.692 15 C 0.536 3.464 16 O -0.483 6.483 17 N -0.318 5.318 18 N -0.314 5.314 19 C 0.249 3.751 20 C -0.615 4.615 21 H 0.059 0.941 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 1.075 2.925 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.413 0.587 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.347 0.653 36 H 0.412 0.588 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 22.621 -1.438 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.317 4.317 4 C 0.010 3.990 5 N -0.272 5.272 6 C 0.307 3.693 7 O -0.381 6.381 8 C -0.159 4.159 9 C -0.240 4.240 10 H 0.181 0.819 11 S 0.275 5.725 12 C -0.022 4.022 13 N -0.294 5.294 14 N -0.347 5.347 15 C 0.319 3.681 16 O -0.354 6.354 17 N -0.148 5.148 18 N -0.096 5.096 19 C 0.131 3.869 20 C -0.653 4.653 21 H 0.077 0.923 22 C -0.179 4.179 23 N -0.536 5.536 24 Si 0.902 3.098 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.179 0.821 32 H 0.248 0.752 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.251 0.749 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.031 20.014 0.259 21.567 hybrid contribution 2.862 2.884 -1.834 4.458 sum 10.894 22.898 -1.575 25.406 Atomic orbital electron populations 1.20342 0.87772 1.02799 1.03339 1.21088 0.94981 0.87054 1.00727 1.21238 0.89565 0.99841 1.21087 1.18940 0.87131 0.89552 1.03330 1.42314 1.07821 1.04833 1.72226 1.20134 0.90752 0.81775 0.76609 1.90690 1.26290 1.73567 1.47593 1.21567 0.97623 0.89283 1.07426 1.24042 0.98370 0.98115 1.03453 0.81853 1.88139 1.26408 1.38899 1.19081 1.25164 0.91415 0.98415 0.87168 1.70060 1.31774 1.12887 1.14631 1.44568 1.28395 1.40614 1.21110 1.19572 0.86595 0.80464 0.81502 1.90875 1.42994 1.66873 1.34611 1.77265 0.99723 1.08578 1.29247 1.48720 1.01084 1.07417 1.52353 1.19724 0.95014 0.72562 0.99599 1.22156 1.51315 1.00893 0.90961 0.92277 1.25906 0.92996 0.92533 1.06461 1.70849 1.44733 1.37914 1.00142 0.83444 0.76833 0.76377 0.73179 1.20443 1.21177 1.21093 0.90233 0.90607 0.91090 0.82054 0.75164 0.86756 0.85581 0.83263 0.74907 0.94008 0.93846 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.11 36.01 0.36 -1.03 16 2 C 0.09 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.50 9.52 -39.83 -0.38 -5.88 16 4 C 0.26 4.96 8.11 -154.39 -1.25 3.70 16 5 N -0.62 -8.31 5.45 -11.13 -0.06 -8.37 16 6 C 0.52 5.95 7.55 -10.98 -0.08 5.87 16 7 O -0.51 -7.18 12.12 5.55 0.07 -7.12 16 8 C -0.12 -0.80 5.26 -27.88 -0.15 -0.95 16 9 C -0.11 -0.78 2.87 -27.69 -0.08 -0.86 16 10 H 0.16 1.11 8.03 -51.93 -0.42 0.69 16 11 S 0.05 0.45 21.49 -107.50 -2.31 -1.86 16 12 C 0.37 2.86 8.92 -88.68 -0.79 2.07 16 13 N -0.66 -5.51 14.13 30.84 0.44 -5.07 16 14 N -0.69 -4.17 5.22 -12.31 -0.06 -4.23 16 15 C 0.54 3.96 7.52 -11.92 -0.09 3.87 16 16 O -0.48 -4.81 18.01 5.58 0.10 -4.71 16 17 N -0.32 -7.03 12.59 31.44 0.40 -6.64 16 18 N -0.31 -7.23 3.59 -58.33 -0.21 -7.44 16 19 C 0.25 6.22 5.31 -5.19 -0.03 6.20 16 20 C -0.61 -16.85 9.39 -34.44 -0.32 -17.17 16 21 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.03 0.72 5.46 -17.82 -0.10 0.62 16 23 N -0.90 -25.76 13.65 55.43 0.76 -25.01 16 24 Si 1.07 24.34 29.90 -169.99 -5.08 19.26 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.18 7.06 -51.93 -0.37 0.81 16 31 H 0.16 2.94 5.91 -52.49 -0.31 2.63 16 32 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.35 2.01 8.92 -40.82 -0.36 1.65 16 36 H 0.41 1.63 8.91 -40.82 -0.36 1.27 16 37 H 0.04 1.10 8.01 -51.93 -0.42 0.68 16 38 H 0.04 1.06 6.90 -51.93 -0.36 0.70 16 39 H 0.27 7.52 7.22 -40.82 -0.29 7.22 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -34.73 354.60 -8.25 -42.98 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.15 Total: 5.11 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.47 Total: -2.24 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 1.25 Total: -56.75 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.17 Total: -11.83 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.08 Total: 19.26 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.31 Total: -1.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.73 -8.25 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768047163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.638 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds