Wall clock time and date at job start Tue Mar 31 2020 19:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35236 * 126.06514 * 2 1 4 4 C 1.40416 * 107.86685 * 180.26963 * 3 2 1 5 5 N 1.40156 * 125.97645 * 179.74375 * 4 3 2 6 6 C 1.34780 * 119.99719 * 359.97438 * 5 4 3 7 7 O 1.21293 * 120.00326 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99860 * 180.02562 * 6 5 4 9 9 C 1.52995 * 109.47205 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.54231 * 303.59703 * 9 8 6 11 11 S 1.82367 * 110.60988 * 66.45616 * 9 8 6 12 12 C 1.77242 * 94.48960 * 118.51611 * 11 9 8 13 13 N 1.30281 * 126.27945 * 179.97438 * 12 11 9 14 14 N 1.37058 * 107.44848 * 359.97438 * 12 11 9 15 15 C 1.32213 * 120.27713 * 0.02562 * 14 12 11 16 16 O 1.21254 * 122.87500 * 180.02562 * 15 14 12 17 17 N 1.31216 * 108.05127 * 359.75634 * 4 3 2 18 18 N 1.34963 * 126.07246 * 179.85732 * 2 1 3 19 19 C 1.46506 * 125.97330 * 359.97438 * 18 2 1 20 20 C 1.50700 * 109.46957 * 269.71244 * 19 18 2 21 21 H 1.08002 * 119.99770 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00083 * 180.02562 * 20 19 18 23 23 N 1.31514 * 120.00147 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 300.00001 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00094 * 24 22 20 28 28 H 1.09000 * 109.46971 * 270.14271 * 1 2 3 29 29 H 1.09003 * 109.47568 * 30.13981 * 1 2 3 30 30 H 1.08996 * 109.47028 * 150.14486 * 1 2 3 31 31 H 1.07998 * 126.07376 * 0.04826 * 3 2 1 32 32 H 0.97000 * 120.00031 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47258 * 300.00941 * 8 6 5 34 34 H 1.09007 * 109.46617 * 60.00374 * 8 6 5 35 35 H 0.96997 * 120.00338 * 179.97438 * 13 12 11 36 36 H 0.96995 * 119.85975 * 180.02562 * 14 12 11 37 37 H 1.08994 * 109.47197 * 149.71632 * 19 18 2 38 38 H 1.08998 * 109.47414 * 29.71313 * 19 18 2 39 39 H 0.97005 * 119.99661 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0932 0.0000 4 6 3.6371 0.6547 -0.0063 5 7 4.7734 1.4750 -0.0134 6 6 4.6365 2.8158 -0.0152 7 8 3.5300 3.3126 -0.0102 8 6 5.8584 3.6980 -0.0234 9 6 5.4276 5.1660 -0.0233 10 1 4.7731 5.3727 -0.8701 11 16 4.6014 5.5923 1.5456 12 6 5.7977 6.8171 2.0041 13 7 5.7849 7.5395 3.0882 14 7 6.7389 6.8651 1.0089 15 6 6.6349 6.0742 -0.0455 16 8 7.4399 6.0770 -0.9523 17 7 3.6337 -0.6575 -0.0046 18 7 2.3017 -1.0909 0.0027 19 6 1.8501 -2.4846 0.0067 20 6 1.7025 -2.9607 1.4289 21 1 1.9227 -2.2919 2.2478 22 6 1.2865 -4.2500 1.6846 23 7 1.0188 -5.0646 0.6874 24 14 1.1029 -4.8400 3.4475 25 1 0.6453 -6.2527 3.4515 26 1 2.4121 -4.7413 4.1413 27 1 0.1048 -3.9949 4.1509 28 1 -0.3633 0.0026 1.0277 29 1 -0.3634 0.8887 -0.5160 30 1 -0.3633 -0.8912 -0.5116 31 1 1.9719 2.1211 0.0007 32 1 5.6583 1.0778 -0.0178 33 1 6.4586 3.4956 0.8636 34 1 6.4489 3.4923 -0.9164 35 1 6.4897 8.1863 3.2484 36 1 7.4843 7.4817 1.0784 37 1 2.5820 -3.1052 -0.5100 38 1 0.8888 -2.5565 -0.5021 39 1 1.1138 -4.7581 -0.2281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768047163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:15 Heat of formation + Delta-G solvation = 12.419539 kcal Electronic energy + Delta-G solvation = -25566.610184 eV Core-core repulsion = 21636.762956 eV Total energy + Delta-G solvation = -3929.847228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.40061 -42.02386 -40.68289 -38.25031 -36.55662 -35.56133 -34.82641 -33.63584 -32.96934 -32.49992 -28.57677 -27.95341 -27.29999 -25.07217 -25.00836 -23.14410 -21.88789 -21.38222 -20.89143 -19.44750 -19.28747 -19.15977 -18.01138 -17.78330 -17.33277 -17.14503 -16.84245 -16.63242 -16.09508 -15.79479 -15.64078 -15.13635 -14.96564 -14.65373 -14.39971 -14.08507 -13.89692 -13.84578 -13.71124 -13.66439 -13.34548 -13.07565 -12.80822 -12.55415 -12.27796 -11.96873 -11.94825 -11.82485 -11.60615 -11.08955 -10.99514 -10.85711 -10.80653 -10.69478 -9.63937 -9.21739 -9.20002 -8.75704 -6.58017 -0.15550 0.18237 0.55956 0.85178 1.18870 1.36727 1.44534 1.52507 1.58012 1.67781 1.79760 2.16722 2.24380 2.49247 2.67905 3.00578 3.20834 3.54528 3.83204 3.93658 4.07603 4.07983 4.36180 4.36988 4.49034 4.51028 4.74574 4.75035 4.80506 4.95263 4.95716 5.07393 5.20736 5.38621 5.57356 5.82029 5.95136 6.20370 6.23642 6.26181 6.40159 6.76509 6.90320 7.05990 7.18754 8.57063 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.002286 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.550784 B =12243.678947 C =12591.161938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.084 3.916 3 C -0.291 4.291 4 C 0.276 3.724 5 N -0.620 5.620 6 C 0.525 3.475 7 O -0.532 6.532 8 C -0.106 4.106 9 C -0.097 4.097 10 H 0.170 0.830 11 S 0.006 5.994 12 C 0.380 3.620 13 N -0.676 5.676 14 N -0.678 5.678 15 C 0.548 3.452 16 O -0.506 6.506 17 N -0.359 5.359 18 N -0.344 5.344 19 C 0.263 3.737 20 C -0.625 4.625 21 H 0.042 0.958 22 C -0.015 4.015 23 N -0.920 5.920 24 Si 1.118 2.882 25 H -0.276 1.276 26 H -0.277 1.277 27 H -0.267 1.267 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.174 0.826 32 H 0.428 0.572 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.360 0.640 36 H 0.424 0.576 37 H 0.019 0.981 38 H 0.046 0.954 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 24.428 -0.855 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.046 4.046 3 C -0.322 4.322 4 C 0.022 3.978 5 N -0.270 5.270 6 C 0.312 3.688 7 O -0.407 6.407 8 C -0.147 4.147 9 C -0.229 4.229 10 H 0.188 0.812 11 S 0.231 5.769 12 C -0.011 4.011 13 N -0.311 5.311 14 N -0.334 5.334 15 C 0.331 3.669 16 O -0.378 6.378 17 N -0.189 5.189 18 N -0.126 5.126 19 C 0.143 3.857 20 C -0.663 4.663 21 H 0.061 0.939 22 C -0.215 4.215 23 N -0.556 5.556 24 Si 0.939 3.061 25 H -0.201 1.201 26 H -0.202 1.202 27 H -0.192 1.192 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.191 0.809 32 H 0.266 0.734 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.265 0.735 37 H 0.037 0.963 38 H 0.064 0.936 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.982 21.885 0.840 23.671 hybrid contribution 2.629 2.515 -2.041 4.172 sum 11.611 24.400 -1.201 27.048 Atomic orbital electron populations 1.20468 0.85530 1.04157 1.03892 1.21779 0.96631 0.86551 0.99650 1.21471 0.89751 0.99963 1.21019 1.19314 0.88946 0.89083 1.00456 1.42512 1.06998 1.05078 1.72418 1.20943 0.91883 0.81093 0.74868 1.90674 1.27936 1.73808 1.48324 1.21609 0.95518 0.87656 1.09943 1.24059 0.98160 0.98316 1.02415 0.81245 1.88323 1.27982 1.39933 1.20629 1.24817 0.91156 0.97886 0.87268 1.70021 1.32683 1.13414 1.14992 1.44376 1.28326 1.40428 1.20283 1.19411 0.86010 0.80251 0.81210 1.90885 1.43780 1.67685 1.35428 1.77181 0.99677 1.10390 1.31701 1.48502 1.02024 1.07047 1.55013 1.19303 0.94361 0.73914 0.98103 1.22320 1.51280 1.00971 0.91692 0.93915 1.27265 0.92059 0.92752 1.09458 1.70946 1.46119 1.38333 1.00201 0.82908 0.77644 0.76352 0.69239 1.20053 1.20225 1.19198 0.89955 0.87239 0.91695 0.80883 0.73416 0.84356 0.82763 0.81809 0.73504 0.96274 0.93640 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.67 10.11 71.24 0.72 -1.94 16 2 C 0.08 3.39 6.92 41.38 0.29 3.68 16 3 C -0.29 -11.00 9.52 22.11 0.21 -10.79 16 4 C 0.28 10.27 8.11 133.33 1.08 11.35 16 5 N -0.62 -15.49 5.45 -307.50 -1.68 -17.16 16 6 C 0.52 10.80 7.55 87.66 0.66 11.47 16 7 O -0.53 -14.17 12.12 -3.07 -0.04 -14.21 16 8 C -0.11 -1.12 5.26 29.85 0.16 -0.96 16 9 C -0.10 -1.17 2.87 29.97 0.09 -1.08 16 10 H 0.17 1.90 8.03 -2.39 -0.02 1.88 16 11 S 0.01 0.10 21.49 -56.49 -1.21 -1.12 16 12 C 0.38 5.16 8.92 179.67 1.60 6.76 16 13 N -0.68 -10.13 14.13 -56.36 -0.80 -10.93 16 14 N -0.68 -6.54 5.22 -312.68 -1.63 -8.17 16 15 C 0.55 6.66 7.52 88.18 0.66 7.33 16 16 O -0.51 -8.74 18.01 -2.95 -0.05 -8.80 16 17 N -0.36 -16.13 12.59 -54.45 -0.69 -16.81 16 18 N -0.34 -16.20 3.59 -338.45 -1.22 -17.42 16 19 C 0.26 13.59 5.31 85.63 0.45 14.04 16 20 C -0.62 -34.94 9.39 25.60 0.24 -34.70 16 21 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 22 C -0.02 -0.83 5.46 84.65 0.46 -0.37 16 23 N -0.92 -53.35 13.65 21.45 0.29 -53.06 16 24 Si 1.12 48.68 29.90 68.60 2.05 50.74 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 26 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 2.16 7.06 -2.39 -0.02 2.14 16 31 H 0.17 6.09 5.91 -2.91 -0.02 6.08 16 32 H 0.43 7.95 8.82 -92.71 -0.82 7.13 16 33 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.15 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.36 3.52 8.92 -92.71 -0.83 2.69 16 36 H 0.42 2.30 8.91 -92.71 -0.83 1.48 16 37 H 0.02 1.06 8.01 -2.39 -0.02 1.04 16 38 H 0.05 2.30 6.90 -2.39 -0.02 2.28 16 39 H 0.26 15.03 7.22 -92.70 -0.67 14.36 16 Total: -1.00 -75.99 354.60 0.45 -75.54 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -1.21 Total: 16.62 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.63 Total: 4.78 kcal Atomic # 7 Polarization: -117.83 SS G_CDS: -5.71 Total: -123.55 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.09 Total: -23.01 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.74 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.21 Total: -1.12 kcal Total: -75.99 0.45 -75.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768047163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.957 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds