Wall clock time and date at job start Tue Mar 31 2020 19:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35238 * 126.07295 * 2 1 4 4 C 1.40404 * 107.87423 * 179.97438 * 3 2 1 5 5 N 1.40161 * 125.97656 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99680 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00079 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99783 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47333 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.54536 * 56.39630 * 9 8 6 11 11 S 1.82376 * 110.60566 * 293.54661 * 9 8 6 12 12 C 1.77248 * 94.48938 * 241.32730 * 11 9 8 13 13 N 1.30283 * 126.27747 * 179.97438 * 12 11 9 14 14 N 1.37057 * 107.44561 * 0.24288 * 12 11 9 15 15 C 1.32215 * 120.28218 * 359.51448 * 14 12 11 16 16 O 1.21249 * 122.88441 * 180.24833 * 15 14 12 17 17 N 1.31220 * 108.05120 * 0.26229 * 4 3 2 18 18 N 1.34973 * 126.06942 * 179.97438 * 2 1 3 19 19 C 1.46498 * 125.97754 * 0.02562 * 18 2 1 20 20 C 1.50704 * 109.46534 * 90.00227 * 19 18 2 21 21 H 1.07996 * 120.00467 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99546 * 180.02562 * 20 19 18 23 23 N 1.31520 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99931 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47026 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47012 * 119.99929 * 24 22 20 27 27 H 1.48505 * 109.46954 * 239.99767 * 24 22 20 28 28 H 1.09004 * 109.47259 * 90.02779 * 1 2 3 29 29 H 1.09001 * 109.47341 * 210.02284 * 1 2 3 30 30 H 1.09000 * 109.47147 * 330.02576 * 1 2 3 31 31 H 1.08004 * 126.06305 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00227 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47199 * 59.99690 * 8 6 5 34 34 H 1.09003 * 109.47230 * 300.00289 * 8 6 5 35 35 H 0.97001 * 119.99694 * 179.97438 * 13 12 11 36 36 H 0.96996 * 119.86119 * 179.75142 * 14 12 11 37 37 H 1.08994 * 109.47172 * 210.00203 * 19 18 2 38 38 H 1.08998 * 109.47175 * 330.00650 * 19 18 2 39 39 H 0.96999 * 119.99876 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7735 1.4750 0.0003 6 6 4.6366 2.8158 -0.0001 7 8 3.5301 3.3125 -0.0007 8 6 5.8585 3.6978 0.0001 9 6 5.4277 5.1659 0.0002 10 1 4.7779 5.3739 0.8502 11 16 4.5929 5.5899 -1.5649 12 6 5.7841 6.8174 -2.0295 13 7 5.7648 7.5388 -3.1142 14 7 6.7326 6.8643 -1.0412 15 6 6.6328 6.0773 0.0165 16 8 7.4417 6.0828 0.9198 17 7 3.6337 -0.6576 -0.0048 18 7 2.3016 -1.0910 0.0005 19 6 1.8501 -2.4846 0.0006 20 6 1.6958 -2.9627 -1.4203 21 1 1.9121 -2.2951 -2.2412 22 6 1.2776 -4.2521 -1.6722 23 7 1.0137 -5.0650 -0.6725 24 14 1.0871 -4.8450 -3.4333 25 1 1.4439 -3.7465 -4.3667 26 1 1.9859 -6.0041 -3.6654 27 1 -0.3207 -5.2555 -3.6679 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 1.9719 2.1211 -0.0004 32 1 5.6584 1.0778 0.0011 33 1 6.4542 3.4936 -0.8895 34 1 6.4535 3.4941 0.8904 35 1 6.4669 8.1878 -3.2776 36 1 7.4784 7.4798 -1.1165 37 1 2.5845 -3.1045 0.5148 38 1 0.8912 -2.5559 0.5140 39 1 0.7191 -5.9720 -0.8497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768047164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:20 Heat of formation + Delta-G solvation = 40.282261 kcal Electronic energy + Delta-G solvation = -25530.535373 eV Core-core repulsion = 21601.896364 eV Total energy + Delta-G solvation = -3928.639010 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.44484 -40.80343 -39.49614 -37.59292 -35.05186 -34.11852 -33.43796 -32.87085 -31.47934 -30.85612 -27.41854 -26.45050 -26.17354 -24.38002 -23.16350 -22.02663 -21.03391 -19.91247 -19.40306 -18.72760 -18.55360 -17.14597 -16.71888 -16.60217 -16.40805 -16.06142 -15.84644 -15.31992 -15.03620 -14.52800 -14.28294 -14.01806 -13.79075 -13.41059 -13.20842 -13.02779 -12.52706 -12.49881 -12.32924 -12.19586 -11.73679 -11.60381 -11.43446 -11.17707 -11.12281 -10.87089 -10.50255 -10.36082 -10.26678 -10.18682 -10.04259 -9.71874 -9.56120 -8.66833 -8.49597 -8.00496 -7.52671 -6.27943 -4.35450 0.50088 0.81944 1.19233 1.99370 2.13263 2.20938 2.65557 2.83757 3.19119 3.27146 3.27947 3.33594 3.63229 3.77759 3.87847 4.28365 4.41013 4.57414 4.62154 4.90592 5.03003 5.06172 5.38679 5.43593 5.65427 5.86752 5.97974 6.08590 6.16454 6.39966 6.45687 6.63529 6.80566 6.89024 7.02135 7.30860 7.35243 7.53116 7.64966 7.85966 7.99625 8.04915 8.59039 8.72381 9.31151 10.79470 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002280 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.416562 B =12277.818013 C =12621.273142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.092 3.908 3 C -0.288 4.288 4 C 0.260 3.740 5 N -0.625 5.625 6 C 0.522 3.478 7 O -0.508 6.508 8 C -0.117 4.117 9 C -0.107 4.107 10 H 0.164 0.836 11 S 0.050 5.950 12 C 0.369 3.631 13 N -0.660 5.660 14 N -0.692 5.692 15 C 0.536 3.464 16 O -0.483 6.483 17 N -0.318 5.318 18 N -0.315 5.315 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.160 0.840 32 H 0.413 0.587 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.347 0.653 36 H 0.412 0.588 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 21.942 1.472 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.319 4.319 4 C 0.008 3.992 5 N -0.272 5.272 6 C 0.307 3.693 7 O -0.382 6.382 8 C -0.159 4.159 9 C -0.240 4.240 10 H 0.181 0.819 11 S 0.275 5.725 12 C -0.022 4.022 13 N -0.294 5.294 14 N -0.347 5.347 15 C 0.319 3.681 16 O -0.354 6.354 17 N -0.149 5.149 18 N -0.098 5.098 19 C 0.140 3.860 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.178 0.822 32 H 0.248 0.752 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.167 0.833 36 H 0.251 0.749 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.181 20.454 0.741 22.042 hybrid contribution 2.278 1.079 -0.036 2.520 sum 10.458 21.533 0.706 23.949 Atomic orbital electron populations 1.20341 0.87831 1.02857 1.03250 1.21084 0.94966 0.87146 1.00748 1.21225 0.89596 0.99823 1.21264 1.18942 0.87059 0.89607 1.03586 1.42307 1.07861 1.04815 1.72180 1.20113 0.90710 0.81817 0.76681 1.90690 1.26271 1.73579 1.47646 1.21560 0.97685 0.89252 1.07393 1.24042 0.98319 0.98130 1.03475 0.81875 1.88145 1.26404 1.38678 1.19274 1.25177 0.91320 0.98424 0.87245 1.70067 1.31967 1.12917 1.14454 1.44571 1.28032 1.40868 1.21228 1.19579 0.86617 0.80487 0.81449 1.90872 1.42720 1.66872 1.34898 1.77264 1.00032 1.08470 1.29097 1.49018 1.00930 1.07861 1.51959 1.19712 0.96007 0.71255 0.99017 1.21350 1.46715 0.97958 0.91346 0.91675 1.24932 0.94657 0.96082 0.98140 1.69929 1.44949 1.07113 1.30976 0.86304 0.77890 0.78820 0.83698 1.19539 1.20660 1.20629 0.90349 0.90858 0.90767 0.82212 0.75211 0.86786 0.85610 0.83291 0.74930 0.92984 0.92735 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.11 36.00 0.36 -1.02 16 2 C 0.09 1.85 6.92 -82.28 -0.57 1.28 16 3 C -0.29 -5.52 9.52 -39.84 -0.38 -5.90 16 4 C 0.26 4.90 8.11 -154.39 -1.25 3.65 16 5 N -0.62 -8.32 5.45 -11.13 -0.06 -8.38 16 6 C 0.52 5.98 7.55 -10.99 -0.08 5.89 16 7 O -0.51 -7.23 12.12 5.55 0.07 -7.16 16 8 C -0.12 -0.81 5.27 -27.89 -0.15 -0.96 16 9 C -0.11 -0.79 2.86 -27.69 -0.08 -0.87 16 10 H 0.16 1.12 8.03 -51.93 -0.42 0.70 16 11 S 0.05 0.45 21.49 -107.50 -2.31 -1.86 16 12 C 0.37 2.88 8.92 -88.68 -0.79 2.09 16 13 N -0.66 -5.56 14.13 30.84 0.44 -5.12 16 14 N -0.69 -4.21 5.22 -12.31 -0.06 -4.28 16 15 C 0.54 4.00 7.53 -11.92 -0.09 3.91 16 16 O -0.48 -4.85 18.01 5.58 0.10 -4.75 16 17 N -0.32 -7.00 12.59 31.44 0.40 -6.61 16 18 N -0.32 -7.23 3.59 -58.33 -0.21 -7.44 16 19 C 0.26 6.45 5.99 -5.19 -0.03 6.42 16 20 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 21 H 0.07 1.83 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 24 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.22 7.07 -51.93 -0.37 0.85 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.16 2.92 5.92 -52.48 -0.31 2.61 16 32 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 33 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.35 2.04 8.92 -40.82 -0.36 1.67 16 36 H 0.41 1.66 8.91 -40.82 -0.36 1.30 16 37 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.05 1.35 7.04 -51.93 -0.37 0.99 16 39 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -33.75 355.93 -8.25 -42.01 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.21 Total: 5.03 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -3.48 Total: 1.36 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: 1.23 Total: -55.81 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.17 Total: -11.91 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.31 Total: -1.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.75 -8.25 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768047164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.288 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds