Wall clock time and date at job start Tue Mar 31 2020 19:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35238 * 126.07295 * 2 1 4 4 C 1.40404 * 107.87423 * 179.97438 * 3 2 1 5 5 N 1.40161 * 125.97656 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99680 * 0.02562 * 5 4 3 7 7 O 1.21293 * 120.00079 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99783 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.47333 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.54536 * 56.39630 * 9 8 6 11 11 S 1.82376 * 110.60566 * 293.54661 * 9 8 6 12 12 C 1.77248 * 94.48938 * 241.32730 * 11 9 8 13 13 N 1.30283 * 126.27747 * 179.97438 * 12 11 9 14 14 N 1.37057 * 107.44561 * 0.24288 * 12 11 9 15 15 C 1.32215 * 120.28218 * 359.51448 * 14 12 11 16 16 O 1.21249 * 122.88441 * 180.24833 * 15 14 12 17 17 N 1.31220 * 108.05120 * 0.26229 * 4 3 2 18 18 N 1.34973 * 126.06942 * 179.97438 * 2 1 3 19 19 C 1.46498 * 125.97754 * 0.02562 * 18 2 1 20 20 C 1.50704 * 109.46534 * 90.00227 * 19 18 2 21 21 H 1.07996 * 120.00467 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99546 * 180.02562 * 20 19 18 23 23 N 1.31520 * 120.00012 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99931 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47026 * 359.97438 * 24 22 20 26 26 H 1.48506 * 109.47012 * 119.99929 * 24 22 20 27 27 H 1.48505 * 109.46954 * 239.99767 * 24 22 20 28 28 H 1.09004 * 109.47259 * 90.02779 * 1 2 3 29 29 H 1.09001 * 109.47341 * 210.02284 * 1 2 3 30 30 H 1.09000 * 109.47147 * 330.02576 * 1 2 3 31 31 H 1.08004 * 126.06305 * 359.97438 * 3 2 1 32 32 H 0.96996 * 120.00227 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.47199 * 59.99690 * 8 6 5 34 34 H 1.09003 * 109.47230 * 300.00289 * 8 6 5 35 35 H 0.97001 * 119.99694 * 179.97438 * 13 12 11 36 36 H 0.96996 * 119.86119 * 179.75142 * 14 12 11 37 37 H 1.08994 * 109.47172 * 210.00203 * 19 18 2 38 38 H 1.08998 * 109.47175 * 330.00650 * 19 18 2 39 39 H 0.96999 * 119.99876 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7735 1.4750 0.0003 6 6 4.6366 2.8158 -0.0001 7 8 3.5301 3.3125 -0.0007 8 6 5.8585 3.6978 0.0001 9 6 5.4277 5.1659 0.0002 10 1 4.7779 5.3739 0.8502 11 16 4.5929 5.5899 -1.5649 12 6 5.7841 6.8174 -2.0295 13 7 5.7648 7.5388 -3.1142 14 7 6.7326 6.8643 -1.0412 15 6 6.6328 6.0773 0.0165 16 8 7.4417 6.0828 0.9198 17 7 3.6337 -0.6576 -0.0048 18 7 2.3016 -1.0910 0.0005 19 6 1.8501 -2.4846 0.0006 20 6 1.6958 -2.9627 -1.4203 21 1 1.9121 -2.2951 -2.2412 22 6 1.2776 -4.2521 -1.6722 23 7 1.0137 -5.0650 -0.6725 24 14 1.0871 -4.8450 -3.4333 25 1 1.4439 -3.7465 -4.3667 26 1 1.9859 -6.0041 -3.6654 27 1 -0.3207 -5.2555 -3.6679 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 1.9719 2.1211 -0.0004 32 1 5.6584 1.0778 0.0011 33 1 6.4542 3.4936 -0.8895 34 1 6.4535 3.4941 0.8904 35 1 6.4669 8.1878 -3.2776 36 1 7.4784 7.4798 -1.1165 37 1 2.5845 -3.1045 0.5148 38 1 0.8912 -2.5559 0.5140 39 1 0.7191 -5.9720 -0.8497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768047164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:19 Heat of formation + Delta-G solvation = 15.937332 kcal Electronic energy + Delta-G solvation = -25531.591049 eV Core-core repulsion = 21601.896364 eV Total energy + Delta-G solvation = -3929.694685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31692 -41.99352 -40.62351 -38.23547 -36.37373 -35.28774 -34.79939 -33.61572 -32.90449 -32.55710 -28.84273 -27.86356 -27.41359 -25.01692 -24.92259 -23.06451 -21.84874 -21.24305 -20.73352 -19.39123 -19.23754 -18.79009 -17.98910 -17.72077 -17.30276 -17.12021 -16.80540 -16.70912 -16.15176 -15.84152 -15.74264 -15.03571 -14.78126 -14.56737 -14.26575 -14.06901 -13.85208 -13.76339 -13.66739 -13.48208 -13.12641 -13.04379 -12.82531 -12.66565 -12.25729 -12.24551 -12.05068 -11.80613 -11.51592 -11.31866 -11.05048 -10.82434 -10.79198 -10.72110 -9.54845 -9.19457 -9.10453 -8.31610 -6.48983 -0.13711 0.19756 0.57888 0.93319 1.25350 1.37925 1.39181 1.44389 1.47840 1.53442 1.71239 2.24080 2.28753 2.39810 2.71058 2.98220 3.23647 3.59885 3.90429 3.98920 4.09308 4.20926 4.39433 4.48165 4.52213 4.74518 4.82674 4.92010 4.97090 5.02395 5.03335 5.17992 5.29543 5.40065 5.55538 5.82722 5.98730 6.25078 6.28233 6.28773 6.64034 6.77841 6.97966 7.13512 7.22121 8.74388 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.020822 B = 0.002280 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.416562 B =12277.818013 C =12621.273142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.084 3.916 3 C -0.294 4.294 4 C 0.273 3.727 5 N -0.620 5.620 6 C 0.524 3.476 7 O -0.533 6.533 8 C -0.106 4.106 9 C -0.096 4.096 10 H 0.170 0.830 11 S 0.006 5.994 12 C 0.380 3.620 13 N -0.676 5.676 14 N -0.679 5.679 15 C 0.548 3.452 16 O -0.506 6.506 17 N -0.359 5.359 18 N -0.344 5.344 19 C 0.275 3.725 20 C -0.550 4.550 21 H 0.049 0.951 22 C 0.022 3.978 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.273 1.273 26 H -0.275 1.275 27 H -0.268 1.268 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.172 0.828 32 H 0.427 0.573 33 H 0.138 0.862 34 H 0.154 0.846 35 H 0.359 0.641 36 H 0.424 0.576 37 H 0.024 0.976 38 H 0.051 0.949 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.533 23.487 0.850 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 C -0.325 4.325 4 C 0.019 3.981 5 N -0.270 5.270 6 C 0.312 3.688 7 O -0.408 6.408 8 C -0.147 4.147 9 C -0.229 4.229 10 H 0.187 0.813 11 S 0.232 5.768 12 C -0.011 4.011 13 N -0.312 5.312 14 N -0.334 5.334 15 C 0.331 3.669 16 O -0.378 6.378 17 N -0.189 5.189 18 N -0.127 5.127 19 C 0.156 3.844 20 C -0.588 4.588 21 H 0.068 0.932 22 C -0.179 4.179 23 N -0.557 5.557 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.200 1.200 27 H -0.193 1.193 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.189 0.811 32 H 0.265 0.735 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.265 0.735 37 H 0.042 0.958 38 H 0.069 0.931 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.061 22.048 0.113 23.837 hybrid contribution 2.055 0.769 0.175 2.202 sum 11.116 22.817 0.287 25.383 Atomic orbital electron populations 1.20463 0.85587 1.04153 1.03856 1.21764 0.96612 0.86618 0.99631 1.21448 0.89798 0.99930 1.21279 1.19309 0.88859 0.89153 1.00756 1.42497 1.07050 1.05062 1.72386 1.20918 0.91837 0.81150 0.74942 1.90674 1.27924 1.73829 1.48386 1.21599 0.95582 0.87628 1.09907 1.24057 0.98101 0.98336 1.02443 0.81282 1.88330 1.27984 1.39713 1.20816 1.24829 0.91067 0.97893 0.87340 1.70027 1.32874 1.13445 1.14811 1.44377 1.27962 1.40682 1.20401 1.19417 0.86027 0.80273 0.81163 1.90882 1.43506 1.67684 1.35711 1.77179 0.99971 1.10246 1.31511 1.48773 1.01864 1.07484 1.54561 1.19225 0.94885 0.72565 0.97711 1.21463 1.47278 0.98294 0.91811 0.93240 1.25725 0.94017 0.95997 1.02133 1.70009 1.45226 1.07563 1.32903 0.85317 0.78422 0.78104 0.78687 1.19778 1.20029 1.19300 0.89953 0.91503 0.87483 0.81099 0.73461 0.84386 0.82799 0.81836 0.73523 0.95789 0.93104 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.67 10.11 71.23 0.72 -1.95 16 2 C 0.08 3.40 6.92 41.38 0.29 3.69 16 3 C -0.29 -11.14 9.52 22.11 0.21 -10.93 16 4 C 0.27 10.20 8.11 133.32 1.08 11.28 16 5 N -0.62 -15.61 5.45 -307.51 -1.68 -17.28 16 6 C 0.52 10.93 7.55 87.66 0.66 11.59 16 7 O -0.53 -14.35 12.12 -3.07 -0.04 -14.38 16 8 C -0.11 -1.14 5.27 29.85 0.16 -0.98 16 9 C -0.10 -1.19 2.86 29.97 0.09 -1.10 16 10 H 0.17 1.94 8.03 -2.39 -0.02 1.92 16 11 S 0.01 0.10 21.49 -56.49 -1.21 -1.11 16 12 C 0.38 5.23 8.92 179.67 1.60 6.83 16 13 N -0.68 -10.26 14.13 -56.35 -0.80 -11.06 16 14 N -0.68 -6.67 5.22 -312.67 -1.63 -8.30 16 15 C 0.55 6.77 7.53 88.18 0.66 7.44 16 16 O -0.51 -8.84 18.01 -2.93 -0.05 -8.89 16 17 N -0.36 -16.10 12.59 -54.45 -0.69 -16.78 16 18 N -0.34 -16.23 3.59 -338.46 -1.22 -17.45 16 19 C 0.28 14.35 5.99 85.63 0.51 14.86 16 20 C -0.55 -30.52 9.39 25.60 0.24 -30.28 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 22 C 0.02 1.20 5.46 84.65 0.46 1.66 16 23 N -0.92 -51.51 13.29 21.45 0.28 -51.23 16 24 Si 0.97 42.76 29.54 68.60 2.03 44.78 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.07 2.23 7.07 -2.39 -0.02 2.22 16 30 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.17 6.07 5.92 -2.91 -0.02 6.05 16 32 H 0.43 8.01 8.82 -92.71 -0.82 7.19 16 33 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.36 3.58 8.92 -92.71 -0.83 2.75 16 36 H 0.42 2.38 8.91 -92.71 -0.83 1.55 16 37 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 2.63 7.04 -2.39 -0.02 2.62 16 39 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -73.86 355.93 0.37 -73.48 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -1.31 Total: 16.12 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.69 Total: 12.10 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -5.72 Total: -122.10 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.09 Total: -23.28 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -1.21 Total: -1.11 kcal Total: -73.86 0.37 -73.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768047164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.418 kcal (2) G-P(sol) polarization free energy of solvation -73.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds