Wall clock time and date at job start Tue Mar 31 2020 20:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35984 * 117.00107 * 2 1 4 4 C 1.38168 * 120.00209 * 0.25742 * 3 2 1 5 5 C 1.39750 * 119.84574 * 180.29528 * 4 3 2 6 6 C 1.47518 * 120.07779 * 179.71993 * 5 4 3 7 7 O 1.21501 * 119.99700 * 359.72517 * 6 5 4 8 8 O 1.34738 * 120.00146 * 179.73012 * 6 5 4 9 9 C 1.45197 * 116.99878 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46965 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00245 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99913 * 179.97438 * 10 9 8 13 13 C 1.37092 * 119.99993 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99915 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00116 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00144 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47133 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47176 * 119.99605 * 17 15 13 20 20 H 1.48498 * 109.46898 * 239.99583 * 17 15 13 21 21 C 1.39748 * 119.84530 * 359.44993 * 5 4 3 22 22 C 1.37771 * 120.00753 * 0.27048 * 21 5 4 23 23 C 1.38845 * 120.15644 * 0.02562 * 22 21 5 24 24 O 1.35831 * 119.92617 * 180.02562 * 23 22 21 25 25 C 1.34277 * 117.00256 * 261.14257 * 24 23 22 26 26 C 1.50691 * 119.99702 * 185.41973 * 25 24 23 27 27 O 1.20825 * 119.99719 * 5.42127 * 25 24 23 28 28 H 1.09004 * 109.47161 * 60.00019 * 1 2 3 29 29 H 1.08994 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47263 * 300.00023 * 1 2 3 31 31 H 1.08001 * 120.07903 * 0.03882 * 4 3 2 32 32 H 1.08996 * 109.47471 * 60.00014 * 9 8 6 33 33 H 1.09002 * 109.47793 * 299.99489 * 9 8 6 34 34 H 0.96998 * 119.99907 * 0.02562 * 12 10 9 35 35 H 0.96996 * 119.99965 * 180.02562 * 16 15 13 36 36 H 1.08008 * 119.99401 * 180.29559 * 21 5 4 37 37 H 1.07998 * 119.92495 * 180.02562 * 22 21 5 38 38 H 1.09001 * 109.47822 * 359.97438 * 26 25 24 39 39 H 1.09007 * 109.47346 * 120.00093 * 26 25 24 40 40 H 1.08998 * 109.47243 * 239.99780 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2939 2.3704 0.0054 5 6 1.9317 3.6139 -0.0009 6 6 1.1333 4.8543 -0.0014 7 8 -0.0803 4.7956 -0.0015 8 8 1.7499 6.0524 -0.0020 9 6 0.9012 7.2305 -0.0031 10 6 1.7605 8.4686 -0.0029 11 8 2.9692 8.3679 -0.0024 12 7 1.1857 9.6877 -0.0043 13 6 1.9674 10.8140 -0.0047 14 1 3.0437 10.7243 -0.0043 15 6 1.3749 12.0708 -0.0057 16 7 0.0653 12.1799 -0.0067 17 14 2.4400 13.6055 -0.0069 18 1 3.8725 13.2139 -0.0061 19 1 2.1471 14.4103 -1.2200 20 1 2.1471 14.4122 1.2049 21 6 3.3276 3.6794 -0.0009 22 6 4.0719 2.5201 -0.0004 23 6 3.4384 1.2845 -0.0004 24 8 4.1767 0.1444 0.0006 25 6 4.3544 -0.4679 -1.1811 26 6 5.0569 -1.7997 -1.2415 27 8 3.9511 0.0490 -2.1960 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2153 2.3154 0.0102 32 1 0.2716 7.2256 0.8866 33 1 0.2722 7.2245 -0.8933 34 1 0.2191 9.7682 -0.0051 35 1 -0.3482 13.0573 -0.0077 36 1 3.8231 4.6392 -0.0009 37 1 5.1506 2.5723 0.0000 38 1 5.3463 -2.1039 -0.2356 39 1 4.3860 -2.5454 -1.6681 40 1 5.9470 -1.7131 -1.8646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772005381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:34 Heat of formation + Delta-G solvation = -200.397124 kcal Electronic energy + Delta-G solvation = -27867.881003 eV Core-core repulsion = 23421.466979 eV Total energy + Delta-G solvation = -4446.414024 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77821 -40.51284 -39.72136 -38.22338 -37.77590 -36.91452 -36.11638 -34.01943 -31.69489 -31.38841 -30.73579 -30.25512 -28.52895 -27.61638 -25.10351 -24.30300 -22.75014 -22.06994 -20.99783 -19.61411 -18.97236 -18.39697 -18.09701 -17.42748 -17.27045 -16.73388 -16.47950 -16.38267 -16.01226 -15.72076 -15.53555 -14.90003 -14.62482 -14.35329 -14.15921 -14.12351 -13.96461 -13.39182 -13.23404 -13.00322 -12.89593 -12.73343 -12.33843 -12.30245 -12.05693 -11.90916 -11.63598 -11.47143 -11.21300 -11.16284 -11.00653 -10.60482 -10.47479 -10.39883 -10.31181 -9.63118 -9.35371 -8.62954 -8.54839 -8.09847 -6.51327 -3.93340 0.18546 0.98076 1.76946 2.13981 2.53136 2.61841 2.81774 3.10989 3.23362 3.30773 3.43435 3.71852 4.08411 4.18170 4.42311 4.45933 4.60825 4.71328 4.82108 4.82938 4.83655 4.87731 4.98809 5.07420 5.13610 5.16438 5.22149 5.36640 5.43938 5.65697 5.66478 5.80272 5.95449 6.03067 6.09192 6.25949 6.49178 6.80893 7.46895 7.47359 7.73148 7.93384 8.46634 9.05742 9.37642 9.87162 10.65917 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002044 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.315449 B =13696.002532 C =14615.029558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.112 3.888 4 C -0.135 4.135 5 C -0.075 4.075 6 C 0.506 3.494 7 O -0.507 6.507 8 O -0.317 6.317 9 C 0.061 3.939 10 C 0.439 3.561 11 O -0.575 6.575 12 N -0.552 5.552 13 C -0.302 4.302 14 H 0.107 0.893 15 C 0.024 3.976 16 N -0.897 5.897 17 Si 0.934 3.066 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.077 4.077 22 C -0.092 4.092 23 C 0.082 3.918 24 O -0.284 6.284 25 C 0.457 3.543 26 C -0.142 4.142 27 O -0.493 6.493 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.152 0.848 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.159 0.841 37 H 0.149 0.851 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -27.496 0.577 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.223 6.223 3 C 0.066 3.934 4 C -0.153 4.153 5 C -0.077 4.077 6 C 0.350 3.650 7 O -0.397 6.397 8 O -0.231 6.231 9 C -0.016 4.016 10 C 0.223 3.777 11 O -0.459 6.459 12 N -0.189 5.189 13 C -0.431 4.431 14 H 0.125 0.875 15 C -0.178 4.178 16 N -0.537 5.537 17 Si 0.760 3.240 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.095 4.095 22 C -0.110 4.110 23 C 0.040 3.960 24 O -0.200 6.200 25 C 0.301 3.699 26 C -0.199 4.199 27 O -0.378 6.378 28 H 0.079 0.921 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.112 0.888 39 H 0.126 0.874 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.667 -27.381 0.254 27.626 hybrid contribution -0.774 1.113 -0.030 1.356 sum 2.893 -26.268 0.224 26.428 Atomic orbital electron populations 1.23183 0.77493 1.04425 1.02096 1.86096 1.22107 1.25488 1.88600 1.18888 0.90882 0.85161 0.98422 1.21187 1.01224 0.89820 1.03117 1.18979 0.93501 0.90287 1.04910 1.20999 0.86351 0.84445 0.73185 1.90826 1.14796 1.88146 1.45976 1.86589 1.40126 1.13594 1.82828 1.22812 0.92584 0.82532 1.03721 1.19281 0.88635 0.83708 0.86051 1.90560 1.13996 1.86124 1.55259 1.41706 1.09722 1.03749 1.63771 1.19777 0.92646 0.82572 1.48070 0.87518 1.25324 0.96148 0.99458 0.96893 1.69621 1.08824 1.25585 1.49691 0.85734 0.79961 0.80470 0.77799 1.19068 1.20621 1.20627 1.21477 0.92172 0.99668 0.96216 1.21065 1.01315 0.89544 0.99116 1.18046 0.86267 0.85550 1.06131 1.84642 1.64691 1.35634 1.35011 1.24338 0.77155 0.87435 0.80948 1.21587 1.01893 0.90405 1.05966 1.90740 1.46723 1.65166 1.35193 0.92116 0.87751 0.91991 0.83021 0.89313 0.89316 0.77142 0.91665 0.82338 0.83319 0.88754 0.87401 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.41 10.21 -34.35 -0.35 -3.76 16 3 C 0.11 1.39 6.65 -39.18 -0.26 1.13 16 4 C -0.13 -1.69 8.58 -39.04 -0.33 -2.02 16 5 C -0.08 -1.06 5.87 -104.99 -0.62 -1.68 16 6 C 0.51 8.36 7.89 34.51 0.27 8.64 16 7 O -0.51 -8.96 16.13 -19.27 -0.31 -9.27 16 8 O -0.32 -5.90 8.99 -47.28 -0.43 -6.33 16 9 C 0.06 1.15 5.95 36.01 0.21 1.37 16 10 C 0.44 10.47 7.86 -10.98 -0.09 10.39 16 11 O -0.58 -15.76 16.08 -14.11 -0.23 -15.99 16 12 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 13 C -0.30 -8.27 9.68 -14.94 -0.14 -8.42 16 14 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 15 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -23.96 13.05 55.50 0.72 -23.24 16 17 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 21 C -0.08 -0.98 9.60 -39.19 -0.38 -1.36 16 22 C -0.09 -1.05 9.96 -39.53 -0.39 -1.44 16 23 C 0.08 1.01 4.97 -38.93 -0.19 0.81 16 24 O -0.28 -3.08 9.79 -28.72 -0.28 -3.36 16 25 C 0.46 4.56 7.91 36.00 0.28 4.84 16 26 C -0.14 -0.63 10.42 36.00 0.38 -0.25 16 27 O -0.49 -6.79 16.84 -18.75 -0.32 -7.11 16 28 H 0.06 0.43 7.67 -51.93 -0.40 0.04 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.40 7.65 -51.93 -0.40 0.01 16 31 H 0.15 1.72 5.87 -52.49 -0.31 1.41 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.16 2.02 7.60 -52.48 -0.40 1.62 16 37 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 366.96 15.07 5.53 5.53 Total: -1.00 -35.44 366.96 -5.40 -40.84 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.29 Total: 7.31 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -0.36 Total: 13.71 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.67 Total: -37.17 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -1.91 Total: -45.82 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.44 -5.40 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772005381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.560 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds