Wall clock time and date at job start Tue Mar 31 2020 20:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35984 * 117.00107 * 2 1 4 4 C 1.38168 * 120.00209 * 0.25742 * 3 2 1 5 5 C 1.39750 * 119.84574 * 180.29528 * 4 3 2 6 6 C 1.47518 * 120.07779 * 179.71993 * 5 4 3 7 7 O 1.21501 * 119.99700 * 359.72517 * 6 5 4 8 8 O 1.34738 * 120.00146 * 179.73012 * 6 5 4 9 9 C 1.45197 * 116.99878 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.46965 * 179.97438 * 9 8 6 11 11 O 1.21289 * 120.00245 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99913 * 179.97438 * 10 9 8 13 13 C 1.37092 * 119.99993 * 180.02562 * 12 10 9 14 14 H 1.08005 * 119.99915 * 0.02562 * 13 12 10 15 15 C 1.38947 * 120.00116 * 180.02562 * 13 12 10 16 16 N 1.31414 * 120.00144 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00064 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47133 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47176 * 119.99605 * 17 15 13 20 20 H 1.48498 * 109.46898 * 239.99583 * 17 15 13 21 21 C 1.39748 * 119.84530 * 359.44993 * 5 4 3 22 22 C 1.37771 * 120.00753 * 0.27048 * 21 5 4 23 23 C 1.38845 * 120.15644 * 0.02562 * 22 21 5 24 24 O 1.35831 * 119.92617 * 180.02562 * 23 22 21 25 25 C 1.34277 * 117.00256 * 261.14257 * 24 23 22 26 26 C 1.50691 * 119.99702 * 185.41973 * 25 24 23 27 27 O 1.20825 * 119.99719 * 5.42127 * 25 24 23 28 28 H 1.09004 * 109.47161 * 60.00019 * 1 2 3 29 29 H 1.08994 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47263 * 300.00023 * 1 2 3 31 31 H 1.08001 * 120.07903 * 0.03882 * 4 3 2 32 32 H 1.08996 * 109.47471 * 60.00014 * 9 8 6 33 33 H 1.09002 * 109.47793 * 299.99489 * 9 8 6 34 34 H 0.96998 * 119.99907 * 0.02562 * 12 10 9 35 35 H 0.96996 * 119.99965 * 180.02562 * 16 15 13 36 36 H 1.08008 * 119.99401 * 180.29559 * 21 5 4 37 37 H 1.07998 * 119.92495 * 180.02562 * 22 21 5 38 38 H 1.09001 * 109.47822 * 359.97438 * 26 25 24 39 39 H 1.09007 * 109.47346 * 120.00093 * 26 25 24 40 40 H 1.08998 * 109.47243 * 239.99780 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2939 2.3704 0.0054 5 6 1.9317 3.6139 -0.0009 6 6 1.1333 4.8543 -0.0014 7 8 -0.0803 4.7956 -0.0015 8 8 1.7499 6.0524 -0.0020 9 6 0.9012 7.2305 -0.0031 10 6 1.7605 8.4686 -0.0029 11 8 2.9692 8.3679 -0.0024 12 7 1.1857 9.6877 -0.0043 13 6 1.9674 10.8140 -0.0047 14 1 3.0437 10.7243 -0.0043 15 6 1.3749 12.0708 -0.0057 16 7 0.0653 12.1799 -0.0067 17 14 2.4400 13.6055 -0.0069 18 1 3.8725 13.2139 -0.0061 19 1 2.1471 14.4103 -1.2200 20 1 2.1471 14.4122 1.2049 21 6 3.3276 3.6794 -0.0009 22 6 4.0719 2.5201 -0.0004 23 6 3.4384 1.2845 -0.0004 24 8 4.1767 0.1444 0.0006 25 6 4.3544 -0.4679 -1.1811 26 6 5.0569 -1.7997 -1.2415 27 8 3.9511 0.0490 -2.1960 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2153 2.3154 0.0102 32 1 0.2716 7.2256 0.8866 33 1 0.2722 7.2245 -0.8933 34 1 0.2191 9.7682 -0.0051 35 1 -0.3482 13.0573 -0.0077 36 1 3.8231 4.6392 -0.0009 37 1 5.1506 2.5723 0.0000 38 1 5.3463 -2.1039 -0.2356 39 1 4.3860 -2.5454 -1.6681 40 1 5.9470 -1.7131 -1.8646 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772005381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:33 Heat of formation + Delta-G solvation = -222.595588 kcal Electronic energy + Delta-G solvation = -27868.843601 eV Core-core repulsion = 23421.466979 eV Total energy + Delta-G solvation = -4447.376622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.65079 -41.77609 -40.69677 -40.02869 -38.70009 -37.91780 -37.49987 -36.04499 -33.43273 -32.55278 -31.64000 -30.95790 -29.97251 -28.43684 -26.74187 -25.60763 -23.65621 -23.05430 -22.04806 -21.46204 -20.09426 -19.98435 -19.36464 -18.50210 -18.08402 -17.91826 -17.79930 -17.74997 -17.17737 -16.78227 -16.59834 -16.44169 -15.85010 -15.78816 -15.70618 -15.20459 -14.95527 -14.73229 -14.24045 -14.00129 -13.78151 -13.65621 -13.57304 -13.45516 -13.35819 -13.04187 -12.95151 -12.66759 -12.47123 -12.26934 -12.13063 -12.11238 -11.94922 -11.93067 -11.80466 -11.59342 -10.53367 -10.31223 -10.12601 -9.55427 -8.53201 -6.03673 -0.84284 0.04024 0.98802 1.10471 1.18076 1.34191 1.43709 1.58221 1.73410 1.85541 2.02410 2.28582 2.43831 2.94312 3.12356 3.37295 3.48425 3.57927 3.76598 3.87287 3.96861 4.12687 4.18491 4.19929 4.25262 4.27910 4.39664 4.53017 4.56415 4.62679 4.67203 4.83404 4.96329 4.99513 5.11876 5.21701 5.36855 5.43987 5.87908 5.99192 6.38499 6.50066 6.68402 7.02075 7.38606 7.91782 8.63990 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.024084 B = 0.002044 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.315449 B =13696.002532 C =14615.029558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.319 6.319 3 C 0.108 3.892 4 C -0.133 4.133 5 C -0.094 4.094 6 C 0.510 3.490 7 O -0.521 6.521 8 O -0.332 6.332 9 C 0.071 3.929 10 C 0.437 3.563 11 O -0.615 6.615 12 N -0.557 5.557 13 C -0.336 4.336 14 H 0.085 0.915 15 C -0.010 4.010 16 N -0.915 5.915 17 Si 0.999 3.001 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.270 1.270 21 C -0.080 4.080 22 C -0.089 4.089 23 C 0.074 3.926 24 O -0.284 6.284 25 C 0.454 3.546 26 C -0.134 4.134 27 O -0.538 6.538 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.069 0.931 31 H 0.161 0.839 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.553 -28.917 0.747 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.061 3.939 4 C -0.151 4.151 5 C -0.095 4.095 6 C 0.356 3.644 7 O -0.412 6.412 8 O -0.247 6.247 9 C -0.006 4.006 10 C 0.224 3.776 11 O -0.502 6.502 12 N -0.195 5.195 13 C -0.465 4.465 14 H 0.103 0.897 15 C -0.211 4.211 16 N -0.555 5.555 17 Si 0.822 3.178 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.195 1.195 21 C -0.098 4.098 22 C -0.107 4.107 23 C 0.031 3.969 24 O -0.199 6.199 25 C 0.301 3.699 26 C -0.190 4.190 27 O -0.426 6.426 28 H 0.079 0.921 29 H 0.150 0.850 30 H 0.088 0.912 31 H 0.179 0.821 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.134 0.866 39 H 0.141 0.859 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.815 -28.828 0.437 29.082 hybrid contribution -0.842 1.402 -0.082 1.638 sum 2.973 -27.425 0.355 27.588 Atomic orbital electron populations 1.23491 0.75641 1.06444 1.02487 1.86093 1.24024 1.24749 1.88338 1.18998 0.91182 0.85555 0.98122 1.21245 1.01741 0.89353 1.02803 1.18935 0.93860 0.89576 1.07119 1.21341 0.86426 0.84241 0.72393 1.90807 1.15332 1.88165 1.46892 1.86582 1.40649 1.14139 1.83355 1.22613 0.91499 0.80779 1.05738 1.20036 0.88624 0.84743 0.84204 1.90527 1.16054 1.86943 1.56687 1.41736 1.09821 1.03923 1.64007 1.19758 0.92139 0.84127 1.50509 0.89691 1.26138 0.97463 1.01762 0.95699 1.69677 1.09862 1.26744 1.49225 0.84789 0.77932 0.76719 0.78402 1.19518 1.19516 1.19464 1.21476 0.91834 1.00087 0.96418 1.21289 1.02476 0.88798 0.98119 1.18316 0.86718 0.86389 1.05431 1.84674 1.64368 1.35100 1.35780 1.25503 0.76200 0.88366 0.79829 1.21800 1.02171 0.87173 1.07905 1.90725 1.48875 1.66524 1.36431 0.92102 0.85001 0.91201 0.82112 0.87123 0.87287 0.76529 0.90974 0.82765 0.80905 0.86632 0.85865 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.65 10.21 -79.35 -0.81 -7.46 16 3 C 0.11 2.59 6.65 22.53 0.15 2.74 16 4 C -0.13 -3.28 8.58 22.62 0.19 -3.09 16 5 C -0.09 -2.64 5.87 -20.10 -0.12 -2.75 16 6 C 0.51 16.87 7.89 70.27 0.55 17.42 16 7 O -0.52 -18.16 16.13 19.83 0.32 -17.84 16 8 O -0.33 -12.45 8.99 -50.10 -0.45 -12.90 16 9 C 0.07 2.66 5.95 71.24 0.42 3.09 16 10 C 0.44 21.26 7.86 87.66 0.69 21.95 16 11 O -0.62 -34.70 16.08 15.74 0.25 -34.45 16 12 N -0.56 -28.48 5.29 -306.98 -1.62 -30.10 16 13 C -0.34 -18.82 9.68 84.04 0.81 -18.00 16 14 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 15 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 16 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 17 Si 1.00 42.00 29.55 68.60 2.03 44.02 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 C -0.08 -2.04 9.60 22.52 0.22 -1.83 16 22 C -0.09 -1.97 9.96 22.30 0.22 -1.74 16 23 C 0.07 1.75 4.97 22.69 0.11 1.87 16 24 O -0.28 -5.78 9.79 10.57 0.10 -5.68 16 25 C 0.45 8.42 7.91 71.23 0.56 8.98 16 26 C -0.13 -0.82 10.42 71.23 0.74 -0.08 16 27 O -0.54 -14.54 16.84 21.96 0.37 -14.17 16 28 H 0.06 0.80 7.67 -2.38 -0.02 0.78 16 29 H 0.13 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 31 H 0.16 3.55 5.87 -2.91 -0.02 3.53 16 32 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 33 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.40 19.24 7.90 -92.71 -0.73 18.50 16 35 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 36 H 0.15 4.04 7.60 -2.91 -0.02 4.02 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.12 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -77.29 366.96 7.00 -70.29 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.38 Total: 26.70 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 6.14 Total: 29.78 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.34 Total: -78.29 kcal Atomic # 8 Polarization: -92.29 SS G_CDS: -0.21 Total: -92.51 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -77.29 7.00 -70.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772005381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.305 kcal (2) G-P(sol) polarization free energy of solvation -77.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds