Wall clock time and date at job start Tue Mar 31 2020 19:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38195 * 119.55039 * 2 1 4 4 C 1.38602 * 119.24783 * 179.73735 * 3 2 1 5 5 C 1.39053 * 118.38765 * 0.52516 * 4 3 2 6 6 O 1.35933 * 120.47674 * 179.75673 * 5 4 3 7 7 C 1.42902 * 116.99897 * 359.97438 * 6 5 4 8 8 C 1.50700 * 109.46977 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99921 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00134 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00114 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47692 * 89.99669 * 11 10 8 13 13 H 1.07999 * 119.99509 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99830 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00590 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99546 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47375 * 59.99860 * 16 14 12 18 18 H 1.48498 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47066 * 299.99770 * 16 14 12 20 20 C 1.46500 * 120.00025 * 359.97438 * 10 8 7 21 21 C 1.53003 * 109.46894 * 90.00443 * 20 10 8 22 22 C 1.47193 * 109.47271 * 179.97438 * 21 20 10 23 23 N 8.47568 * 130.96838 * 13.29169 * 2 1 3 24 24 C 1.38863 * 119.04354 * 359.73631 * 5 4 3 25 25 Cl 1.73599 * 119.67048 * 180.02562 * 24 5 4 26 26 N 1.31888 * 119.54764 * 180.27145 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72669 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.72266 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72897 * 1 2 3 30 30 H 1.08006 * 120.37843 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.80394 * 180.23993 * 4 3 2 32 32 H 1.09004 * 109.47098 * 299.99662 * 7 6 5 33 33 H 1.09001 * 109.47112 * 60.00232 * 7 6 5 34 34 H 1.09013 * 109.47070 * 209.99710 * 11 10 8 35 35 H 1.09002 * 109.47134 * 329.99064 * 11 10 8 36 36 H 0.97002 * 120.00716 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.47545 * 210.00157 * 20 10 8 38 38 H 1.08994 * 109.47150 * 330.00797 * 20 10 8 39 39 H 1.08997 * 109.47226 * 300.00346 * 21 20 10 40 40 H 1.09007 * 109.47131 * 60.00161 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2022 0.0000 4 6 3.5746 1.1949 0.0055 5 6 4.2293 -0.0319 -0.0003 6 8 5.5874 -0.0886 -0.0002 7 6 6.2887 1.1565 0.0056 8 6 7.7732 0.8969 0.0042 9 8 8.1896 -0.2422 -0.0007 10 7 8.6380 1.9305 0.0094 11 6 10.0811 1.6782 0.0075 12 6 10.5755 1.5992 -1.4139 13 1 9.8838 1.7241 -2.2339 14 6 11.9106 1.3665 -1.6674 15 7 12.7528 1.2140 -0.6690 16 14 12.5233 1.2679 -3.4294 17 1 12.2447 2.5511 -4.1229 18 1 13.9861 1.0123 -3.4313 19 1 11.8262 0.1625 -4.1348 20 6 8.1351 3.3065 0.0159 21 6 7.9597 3.7785 1.4607 22 6 7.4549 5.1611 1.4674 23 7 7.0641 6.2283 1.4714 24 6 3.4756 -1.1982 -0.0058 25 17 4.2761 -2.7386 -0.0124 26 7 2.1575 -1.1473 -0.0054 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3634 0.8924 -0.5095 29 1 -0.3633 -0.8875 -0.5180 30 1 1.6474 2.1369 0.0004 31 1 4.1325 2.1196 0.0096 32 1 6.0196 1.7292 -0.8820 33 1 6.0191 1.7213 0.8980 34 1 10.5926 2.4896 0.5256 35 1 10.2859 0.7362 0.5163 36 1 13.6922 1.0506 -0.8474 37 1 8.8463 3.9557 -0.4945 38 1 7.1746 3.3446 -0.4979 39 1 7.2485 3.1292 1.9713 40 1 8.9202 3.7403 1.9746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777545343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:28 Heat of formation + Delta-G solvation = -12.666734 kcal Electronic energy + Delta-G solvation = -25837.148943 eV Core-core repulsion = 21871.877436 eV Total energy + Delta-G solvation = -3965.271508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.04916 -39.62161 -38.19681 -36.95528 -36.63941 -35.38364 -33.01279 -32.55131 -32.46479 -31.00298 -29.61670 -27.51212 -26.41977 -24.24600 -24.02527 -23.03774 -22.10312 -18.95814 -18.69404 -17.86525 -17.41150 -16.68162 -16.56036 -16.39850 -16.22952 -15.61548 -15.00439 -14.83429 -14.69417 -14.43598 -14.24757 -14.08209 -13.67616 -13.32051 -13.05436 -12.93731 -12.66337 -12.58278 -12.43702 -12.30680 -11.99406 -11.90921 -11.63634 -11.43108 -11.34213 -11.21775 -11.09909 -10.95080 -10.68357 -10.26076 -10.01631 -10.00500 -9.81999 -9.20760 -8.53092 -8.48320 -8.02752 -6.15211 -4.20553 0.63206 0.82441 1.76578 2.48748 2.62035 2.68214 3.03383 3.26398 3.26923 3.32279 3.35364 3.58145 4.02177 4.07016 4.28290 4.36749 4.38063 4.61704 4.70801 4.72911 4.84639 4.86840 4.96642 5.01238 5.20487 5.21007 5.26487 5.29413 5.51999 5.55279 5.62222 5.66441 5.90268 6.01258 6.68005 6.90247 7.21110 7.29991 7.44603 7.45535 7.79845 8.02928 8.08489 8.66304 8.84640 9.45402 10.92937 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.003218 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.211594 B = 8699.736188 C =10585.857233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.099 3.901 3 C -0.126 4.126 4 C -0.155 4.155 5 C 0.098 3.902 6 O -0.266 6.266 7 C 0.033 3.967 8 C 0.510 3.490 9 O -0.501 6.501 10 N -0.592 5.592 11 C 0.247 3.753 12 C -0.534 4.534 13 H 0.058 0.942 14 C 0.065 3.935 15 N -0.892 5.892 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.113 3.887 21 C -0.052 4.052 22 C 0.215 3.785 23 N -0.442 5.442 24 C 0.151 3.849 25 Cl -0.009 7.009 26 N -0.442 5.442 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.265 0.735 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.004 2.601 3.750 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.039 4.039 3 C -0.146 4.146 4 C -0.181 4.181 5 C 0.048 3.952 6 O -0.176 6.176 7 C -0.046 4.046 8 C 0.294 3.706 9 O -0.375 6.375 10 N -0.326 5.326 11 C 0.129 3.871 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.013 4.013 21 C -0.094 4.094 22 C -0.103 4.103 23 N -0.119 5.119 24 C -0.015 4.015 25 Cl 0.019 6.981 26 N -0.154 5.154 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.123 0.877 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.371 2.432 3.792 21.841 hybrid contribution 1.136 0.530 -0.960 1.579 sum -20.235 2.962 2.832 20.646 Atomic orbital electron populations 1.20661 0.87956 1.03661 1.03241 1.21081 0.97128 0.87090 0.98618 1.21879 0.93732 0.99589 0.99391 1.21743 0.95622 0.96934 1.03828 1.19630 0.84487 0.93313 0.97769 1.86331 1.13174 1.30874 1.87232 1.22896 0.92926 0.85567 1.03242 1.19608 0.86070 0.86094 0.78819 1.90777 1.78525 1.21051 1.47115 1.48157 1.09262 1.03174 1.71970 1.19422 0.71322 0.98468 0.97901 1.21353 0.93457 1.50283 0.92132 0.92335 1.24902 0.96647 0.94804 0.97472 1.69895 1.03913 1.48371 1.30899 0.86567 0.77698 0.78663 0.84579 1.20223 1.21145 1.20079 1.21379 1.01141 0.85561 0.93207 1.19915 1.03859 0.84213 1.01383 1.29080 0.93128 0.94877 0.93239 1.81249 1.09855 1.12294 1.08478 1.20916 0.88701 0.87090 1.04817 1.98439 1.76586 1.26673 1.96377 1.66934 1.06531 1.30178 1.11786 0.90342 0.90487 0.90325 0.83749 0.83191 0.89050 0.89296 0.94313 0.93312 0.92491 0.88146 0.90876 0.87666 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 10.17 36.01 0.37 -0.23 16 2 C 0.10 0.94 6.78 -82.58 -0.56 0.38 16 3 C -0.13 -1.00 9.73 -39.46 -0.38 -1.39 16 4 C -0.15 -1.42 9.14 -39.14 -0.36 -1.78 16 5 C 0.10 1.25 6.70 -39.05 -0.26 0.99 16 6 O -0.27 -3.94 9.14 -39.44 -0.36 -4.30 16 7 C 0.03 0.40 3.79 36.01 0.14 0.53 16 8 C 0.51 8.98 7.75 -10.99 -0.09 8.89 16 9 O -0.50 -11.64 16.08 -14.36 -0.23 -11.87 16 10 N -0.59 -9.99 2.46 -175.06 -0.43 -10.42 16 11 C 0.25 5.56 5.16 -5.19 -0.03 5.53 16 12 C -0.53 -13.77 9.39 -34.44 -0.32 -14.09 16 13 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 16 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.11 1.30 5.17 -4.04 -0.02 1.28 16 21 C -0.05 -0.46 6.03 -29.52 -0.18 -0.63 16 22 C 0.21 2.25 15.43 -20.75 -0.32 1.93 16 23 N -0.44 -5.85 18.54 42.17 0.78 -5.06 16 24 C 0.15 2.07 7.29 -17.28 -0.13 1.94 16 25 Cl -0.01 -0.14 28.66 -51.86 -1.49 -1.62 16 26 N -0.44 -5.56 10.25 -6.50 -0.07 -5.63 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.15 0.95 6.45 -52.49 -0.34 0.61 16 32 H 0.09 0.88 6.96 -51.93 -0.36 0.52 16 33 H 0.09 0.74 6.74 -51.93 -0.35 0.39 16 34 H 0.04 0.86 8.07 -51.92 -0.42 0.44 16 35 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 36 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 37 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 38 H 0.07 0.63 6.44 -51.93 -0.33 0.30 16 39 H 0.11 0.69 7.22 -51.93 -0.37 0.32 16 40 H 0.12 1.06 8.14 -51.92 -0.42 0.64 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -34.46 371.30 -7.36 -41.82 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.64 Total: -5.13 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.24 Total: 4.98 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 1.02 Total: -45.28 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.59 Total: -16.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.49 Total: -1.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.46 -7.36 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777545343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.150 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds