Wall clock time and date at job start Tue Mar 31 2020 19:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38195 * 119.55039 * 2 1 4 4 C 1.38602 * 119.24783 * 179.73735 * 3 2 1 5 5 C 1.39053 * 118.38765 * 0.52516 * 4 3 2 6 6 O 1.35933 * 120.47674 * 179.75673 * 5 4 3 7 7 C 1.42902 * 116.99897 * 359.97438 * 6 5 4 8 8 C 1.50700 * 109.46977 * 180.02562 * 7 6 5 9 9 O 1.21289 * 119.99921 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00134 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00114 * 180.02562 * 10 8 7 12 12 C 1.50702 * 109.47692 * 89.99669 * 11 10 8 13 13 H 1.07999 * 119.99509 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99830 * 180.02562 * 12 11 10 15 15 N 1.31506 * 120.00590 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99546 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47375 * 59.99860 * 16 14 12 18 18 H 1.48498 * 109.47043 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47066 * 299.99770 * 16 14 12 20 20 C 1.46500 * 120.00025 * 359.97438 * 10 8 7 21 21 C 1.53003 * 109.46894 * 90.00443 * 20 10 8 22 22 C 1.47193 * 109.47271 * 179.97438 * 21 20 10 23 23 N 8.47568 * 130.96838 * 13.29169 * 2 1 3 24 24 C 1.38863 * 119.04354 * 359.73631 * 5 4 3 25 25 Cl 1.73599 * 119.67048 * 180.02562 * 24 5 4 26 26 N 1.31888 * 119.54764 * 180.27145 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72669 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.72266 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72897 * 1 2 3 30 30 H 1.08006 * 120.37843 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.80394 * 180.23993 * 4 3 2 32 32 H 1.09004 * 109.47098 * 299.99662 * 7 6 5 33 33 H 1.09001 * 109.47112 * 60.00232 * 7 6 5 34 34 H 1.09013 * 109.47070 * 209.99710 * 11 10 8 35 35 H 1.09002 * 109.47134 * 329.99064 * 11 10 8 36 36 H 0.97002 * 120.00716 * 180.02562 * 15 14 12 37 37 H 1.08992 * 109.47545 * 210.00157 * 20 10 8 38 38 H 1.08994 * 109.47150 * 330.00797 * 20 10 8 39 39 H 1.08997 * 109.47226 * 300.00346 * 21 20 10 40 40 H 1.09007 * 109.47131 * 60.00161 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1886 1.2022 0.0000 4 6 3.5746 1.1949 0.0055 5 6 4.2293 -0.0319 -0.0003 6 8 5.5874 -0.0886 -0.0002 7 6 6.2887 1.1565 0.0056 8 6 7.7732 0.8969 0.0042 9 8 8.1896 -0.2422 -0.0007 10 7 8.6380 1.9305 0.0094 11 6 10.0811 1.6782 0.0075 12 6 10.5755 1.5992 -1.4139 13 1 9.8838 1.7241 -2.2339 14 6 11.9106 1.3665 -1.6674 15 7 12.7528 1.2140 -0.6690 16 14 12.5233 1.2679 -3.4294 17 1 12.2447 2.5511 -4.1229 18 1 13.9861 1.0123 -3.4313 19 1 11.8262 0.1625 -4.1348 20 6 8.1351 3.3065 0.0159 21 6 7.9597 3.7785 1.4607 22 6 7.4549 5.1611 1.4674 23 7 7.0641 6.2283 1.4714 24 6 3.4756 -1.1982 -0.0058 25 17 4.2761 -2.7386 -0.0124 26 7 2.1575 -1.1473 -0.0054 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3634 0.8924 -0.5095 29 1 -0.3633 -0.8875 -0.5180 30 1 1.6474 2.1369 0.0004 31 1 4.1325 2.1196 0.0096 32 1 6.0196 1.7292 -0.8820 33 1 6.0191 1.7213 0.8980 34 1 10.5926 2.4896 0.5256 35 1 10.2859 0.7362 0.5163 36 1 13.6922 1.0506 -0.8474 37 1 8.8463 3.9557 -0.4945 38 1 7.1746 3.3446 -0.4979 39 1 7.2485 3.1292 1.9713 40 1 8.9202 3.7403 1.9746 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777545343.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:27 Heat of formation + Delta-G solvation = -34.775486 kcal Electronic energy + Delta-G solvation = -25838.107651 eV Core-core repulsion = 21871.877436 eV Total energy + Delta-G solvation = -3966.230215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.88758 -40.81889 -39.19483 -37.95372 -37.59856 -36.69666 -34.87822 -33.27637 -33.19111 -32.18593 -30.76573 -28.78428 -27.46855 -25.32841 -25.01089 -24.39375 -22.99764 -20.20802 -19.58764 -18.87121 -18.41719 -18.24410 -17.52906 -17.45785 -17.35740 -16.88105 -16.22054 -15.93624 -15.69852 -15.26071 -15.18804 -15.11887 -14.76481 -14.37201 -14.23072 -13.74862 -13.71939 -13.57453 -13.51642 -13.23664 -13.10813 -12.94690 -12.82933 -12.69511 -12.57918 -12.51367 -12.23152 -12.21895 -12.15355 -11.81766 -11.69108 -10.77713 -10.75615 -10.64144 -10.57904 -9.54419 -9.30530 -8.18122 -6.29937 -0.12169 0.09716 0.87553 1.40352 1.43800 1.47247 1.51868 1.65087 1.87502 1.87662 2.39562 2.51942 2.53968 3.09159 3.15294 3.38671 3.52084 3.69933 3.77887 3.88662 3.96346 4.04411 4.12641 4.17352 4.30067 4.57564 4.71932 4.85250 4.85390 4.89024 4.96437 5.05753 5.07654 5.12243 5.33915 5.46108 5.58058 5.83850 6.03342 6.11975 6.62515 6.67346 6.70853 6.79979 7.30938 7.45139 8.88584 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.003218 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.211594 B = 8699.736188 C =10585.857233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.091 3.909 3 C -0.111 4.111 4 C -0.144 4.144 5 C 0.080 3.920 6 O -0.302 6.302 7 C 0.040 3.960 8 C 0.502 3.498 9 O -0.573 6.573 10 N -0.590 5.590 11 C 0.261 3.739 12 C -0.542 4.542 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.925 5.925 16 Si 0.955 3.045 17 H -0.260 1.260 18 H -0.284 1.284 19 H -0.282 1.282 20 C 0.107 3.893 21 C -0.041 4.041 22 C 0.246 3.754 23 N -0.487 5.487 24 C 0.120 3.880 25 Cl -0.042 7.042 26 N -0.470 5.470 27 H 0.089 0.911 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.190 0.810 31 H 0.189 0.811 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.042 0.958 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.089 0.911 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.811 5.736 3.367 24.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.047 4.047 3 C -0.131 4.131 4 C -0.170 4.170 5 C 0.031 3.969 6 O -0.214 6.214 7 C -0.037 4.037 8 C 0.290 3.710 9 O -0.452 6.452 10 N -0.322 5.322 11 C 0.140 3.860 12 C -0.580 4.580 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.185 1.185 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.017 4.017 21 C -0.082 4.082 22 C -0.071 4.071 23 N -0.165 5.165 24 C -0.044 4.044 25 Cl -0.014 7.014 26 N -0.183 5.183 27 H 0.108 0.892 28 H 0.125 0.875 29 H 0.087 0.913 30 H 0.207 0.793 31 H 0.206 0.794 32 H 0.144 0.856 33 H 0.156 0.844 34 H 0.060 0.940 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.211 5.621 3.408 25.088 hybrid contribution 1.876 -0.394 -0.819 2.084 sum -22.336 5.228 2.589 23.085 Atomic orbital electron populations 1.20793 0.85670 1.04692 1.04248 1.21823 0.98727 0.86993 0.97203 1.22387 0.93443 1.00578 0.96655 1.22204 0.96328 0.96609 1.01835 1.19752 0.83583 0.94292 0.99291 1.86278 1.14604 1.32403 1.88091 1.22952 0.88215 0.85472 1.07083 1.20614 0.88622 0.84910 0.76887 1.90748 1.80212 1.23956 1.50274 1.47973 1.07111 1.05685 1.71411 1.18852 0.75161 0.96278 0.95725 1.21738 0.93516 1.49191 0.93602 0.92584 1.25697 0.97181 0.94823 1.01026 1.70003 1.04086 1.49730 1.32703 0.85654 0.77034 0.78918 0.80335 1.18498 1.20915 1.20758 1.21677 1.02597 0.82037 0.95420 1.19856 1.04890 0.83686 0.99752 1.29087 0.91726 0.94507 0.91811 1.81302 1.11683 1.13618 1.09914 1.20991 0.89465 0.86493 1.07492 1.98412 1.77303 1.28923 1.96720 1.66890 1.06228 1.32168 1.13006 0.89200 0.87511 0.91291 0.79320 0.79431 0.85577 0.84450 0.94021 0.97888 0.92574 0.89219 0.86751 0.84302 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 10.17 71.24 0.72 -0.14 16 2 C 0.09 1.47 6.78 42.54 0.29 1.76 16 3 C -0.11 -1.20 9.73 22.35 0.22 -0.98 16 4 C -0.14 -1.94 9.14 22.55 0.21 -1.73 16 5 C 0.08 1.88 6.70 22.62 0.15 2.03 16 6 O -0.30 -8.60 9.14 -73.76 -0.67 -9.27 16 7 C 0.04 0.84 3.79 71.24 0.27 1.11 16 8 C 0.50 17.31 7.75 87.66 0.68 17.98 16 9 O -0.57 -27.78 16.08 15.98 0.26 -27.52 16 10 N -0.59 -19.24 2.46 -826.14 -2.03 -21.27 16 11 C 0.26 12.02 5.16 85.63 0.44 12.46 16 12 C -0.54 -28.38 9.39 25.60 0.24 -28.14 16 13 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 14 C 0.01 0.66 5.46 84.66 0.46 1.12 16 15 N -0.93 -52.97 13.29 21.45 0.28 -52.68 16 16 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 17 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 C 0.11 2.08 5.17 86.38 0.45 2.53 16 21 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 22 C 0.25 4.24 15.43 89.43 1.38 5.62 16 23 N -0.49 -11.51 18.54 20.01 0.37 -11.14 16 24 C 0.12 3.27 7.29 84.83 0.62 3.89 16 25 Cl -0.04 -1.29 28.66 -2.72 -0.08 -1.37 16 26 N -0.47 -11.47 10.25 -174.49 -1.79 -13.26 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.11 0.32 8.07 -2.39 -0.02 0.30 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.19 0.37 8.06 -2.91 -0.02 0.35 16 31 H 0.19 0.99 6.45 -2.91 -0.02 0.97 16 32 H 0.13 1.75 6.96 -2.38 -0.02 1.73 16 33 H 0.14 1.48 6.74 -2.39 -0.02 1.46 16 34 H 0.04 1.88 8.07 -2.38 -0.02 1.86 16 35 H 0.00 0.16 7.42 -2.39 -0.02 0.15 16 36 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 37 H 0.09 2.00 8.07 -2.39 -0.02 1.98 16 38 H 0.11 1.33 6.44 -2.39 -0.02 1.31 16 39 H 0.14 1.05 7.22 -2.39 -0.02 1.04 16 40 H 0.12 1.78 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -83.54 371.30 5.76 -77.79 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: 1.09 Total: -3.50 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 6.30 Total: 17.14 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -3.16 Total: -98.34 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.42 Total: -36.79 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -83.54 5.76 -77.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777545343.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.013 kcal (2) G-P(sol) polarization free energy of solvation -83.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds