Wall clock time and date at job start Tue Mar 31 2020 19:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 H 1.09002 * 109.47088 * 304.99597 * 3 2 1 5 5 C 1.50702 * 109.47149 * 184.99955 * 3 2 1 6 6 H 1.07996 * 119.99834 * 240.00052 * 5 3 2 7 7 C 1.37875 * 119.99778 * 59.99372 * 5 3 2 8 8 N 1.31515 * 120.00558 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99919 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46736 * 60.00157 * 9 7 5 11 11 H 1.48492 * 109.47092 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47183 * 300.00526 * 9 7 5 13 13 O 1.45193 * 109.47703 * 64.99730 * 3 2 1 14 14 C 1.34748 * 117.00116 * 270.00370 * 13 3 2 15 15 O 1.21503 * 120.00068 * 359.97438 * 14 13 3 16 16 C 1.47478 * 120.00264 * 179.97438 * 14 13 3 17 17 C 1.39772 * 120.09978 * 6.59028 * 16 14 13 18 18 C 1.38232 * 119.94516 * 179.97438 * 17 16 14 19 19 C 1.39323 * 119.96670 * 359.90474 * 18 17 16 20 20 C 1.38985 * 120.05422 * 359.97438 * 19 18 17 21 21 C 1.37737 * 120.27449 * 0.23016 * 20 19 18 22 22 N 1.48024 * 120.01905 * 179.83684 * 21 20 19 23 23 O 1.21799 * 119.99474 * 50.99973 * 22 21 20 24 24 O 1.21793 * 119.99872 * 230.99765 * 22 21 20 25 25 O 1.35950 * 120.70285 * 180.26265 * 19 18 17 26 26 C 1.43161 * 116.75305 * 342.75398 * 25 19 18 27 27 C 1.53470 * 108.25604 * 46.31339 * 26 25 19 28 28 O 1.36149 * 119.27357 * 179.86125 * 18 17 16 29 29 H 1.08998 * 109.46851 * 300.00301 * 1 2 3 30 30 H 1.08993 * 109.46671 * 60.00229 * 1 2 3 31 31 H 1.08996 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.08988 * 109.47311 * 239.99950 * 2 1 3 33 33 H 1.08997 * 109.46870 * 119.99042 * 2 1 3 34 34 H 0.96994 * 120.00494 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.02671 * 359.97438 * 17 16 14 36 36 H 1.07991 * 119.86151 * 179.88847 * 20 19 18 37 37 H 1.08993 * 109.70815 * 286.62192 * 26 25 19 38 38 H 1.09000 * 109.70377 * 166.00151 * 26 25 19 39 39 H 1.08998 * 109.71210 * 180.47634 * 27 26 25 40 40 H 1.08996 * 109.71697 * 59.83131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8813 -1.3818 10 1 6.5976 0.1475 -0.2347 11 1 6.3978 0.2178 -2.6508 12 1 6.4995 2.2815 -1.3822 13 8 1.6559 2.0918 1.2406 14 6 0.4682 2.7280 1.2558 15 8 -0.2273 2.7402 0.2596 16 6 0.0123 3.4094 2.4817 17 6 0.8660 3.5158 3.5834 18 6 0.4355 4.1556 4.7306 19 6 -0.8477 4.6953 4.7867 20 6 -1.6951 4.5914 3.6900 21 6 -1.2740 3.9514 2.5453 22 7 -2.1824 3.8408 1.3819 23 8 -2.7390 4.8333 0.9474 24 8 -2.3733 2.7575 0.8591 25 8 -1.2845 5.3323 5.9055 26 6 -0.5489 5.0956 7.1106 27 6 0.9473 5.2222 6.7933 28 8 1.2774 4.2489 5.7966 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8293 -0.0605 -2.9501 35 1 1.8610 3.0984 3.5383 36 1 -2.6897 5.0093 3.7375 37 1 -0.7626 4.0929 7.4807 38 1 -0.8288 5.8330 7.8629 39 1 1.5312 5.0375 7.6950 40 1 1.1597 6.2221 6.4153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787087686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:29 Heat of formation + Delta-G solvation = -122.042391 kcal Electronic energy + Delta-G solvation = -29939.624575 eV Core-core repulsion = 25496.608267 eV Total energy + Delta-G solvation = -4443.016308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.22005 -41.60964 -39.84197 -38.02565 -37.94646 -36.24052 -35.79979 -33.60639 -32.15858 -31.85795 -31.22336 -29.60352 -27.48953 -26.70614 -25.03864 -23.84308 -23.33493 -22.31569 -20.89643 -19.85410 -19.49757 -18.84991 -18.45375 -17.90654 -17.75869 -16.85138 -16.61605 -16.56722 -15.96865 -15.61114 -15.45006 -15.04978 -15.01082 -14.67246 -14.52237 -14.34667 -13.52607 -13.17521 -12.94970 -12.79716 -12.41815 -11.81785 -11.70590 -11.51069 -11.37835 -11.28867 -11.25646 -11.22954 -11.00745 -10.85159 -10.76123 -10.65037 -10.31093 -9.89290 -9.70788 -9.44574 -9.42638 -8.89039 -8.85470 -8.48145 -6.20863 -4.29182 -0.13989 0.35952 1.12082 1.39952 2.21437 2.53080 2.57826 3.15601 3.24331 3.28897 3.32155 3.36655 3.47749 3.88810 4.19410 4.24670 4.26516 4.30886 4.52862 4.68764 4.77618 4.88136 5.03980 5.11081 5.12162 5.34628 5.63911 5.70215 6.14952 6.30523 6.38198 6.48486 6.54740 6.66016 6.84087 6.99679 7.16050 7.23525 7.56937 7.70859 7.83614 7.91423 8.10669 8.41703 8.78838 9.35733 10.85660 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003773 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.428968 B = 7419.471177 C = 9058.143359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.224 3.776 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.885 5.885 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.275 1.275 13 O -0.343 6.343 14 C 0.486 3.514 15 O -0.478 6.478 16 C -0.055 4.055 17 C -0.049 4.049 18 C 0.080 3.920 19 C 0.081 3.919 20 C -0.073 4.073 21 C 0.019 3.981 22 N 0.023 4.977 23 O -0.174 6.174 24 O -0.076 6.076 25 O -0.295 6.295 26 C 0.018 3.982 27 C 0.016 3.984 28 O -0.291 6.291 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.268 0.732 35 H 0.177 0.823 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 8.936 20.430 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.564 4.564 6 H 0.087 0.913 7 C -0.138 4.138 8 N -0.522 5.522 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.259 6.259 14 C 0.328 3.672 15 O -0.367 6.367 16 C -0.058 4.058 17 C -0.068 4.068 18 C 0.034 3.966 19 C 0.034 3.966 20 C -0.092 4.092 21 C -0.063 4.063 22 N 0.553 4.447 23 O -0.382 6.382 24 O -0.313 6.313 25 O -0.209 6.209 26 C -0.057 4.057 27 C -0.059 4.059 28 O -0.205 6.205 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.128 0.872 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.194 0.806 36 H 0.180 0.820 37 H 0.104 0.896 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.486 9.019 20.591 23.397 hybrid contribution 0.713 0.020 -0.194 0.740 sum -5.773 9.039 20.397 23.045 Atomic orbital electron populations 1.21852 0.97730 0.99218 1.01220 1.22039 0.93081 0.98866 1.03401 1.20834 0.95100 0.88964 0.77922 0.93159 1.20960 0.89376 1.39548 1.06475 0.91350 1.24871 0.99244 0.94661 0.94997 1.69877 1.35532 1.37394 1.09383 0.86332 0.83785 0.78478 0.77534 1.19919 1.20966 1.20013 1.86519 1.32365 1.62114 1.44951 1.20382 0.82257 0.78137 0.86455 1.90975 1.54359 1.57225 1.34166 1.18954 0.91626 0.99940 0.95238 1.20820 1.01511 0.97252 0.87245 1.18936 0.88199 1.00013 0.89484 1.18554 0.91055 0.98392 0.88592 1.19707 1.01255 0.98962 0.89326 1.20506 0.91163 1.05909 0.88717 1.43069 0.99926 1.00865 1.00825 1.94523 1.49800 1.28270 1.65657 1.94624 1.63855 1.15031 1.57749 1.86312 1.54109 1.65097 1.15410 1.23815 0.91541 1.04873 0.85488 1.23811 0.96521 0.92947 0.92615 1.86444 1.47600 1.56606 1.29844 0.94753 0.92475 0.94746 0.87204 0.93978 0.92196 0.80584 0.82026 0.89627 0.85141 0.85086 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.57 37.16 0.32 -2.88 16 2 C -0.14 -3.35 5.49 -26.73 -0.15 -3.50 16 3 C 0.22 5.85 2.25 -27.88 -0.06 5.79 16 4 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 5 C -0.53 -14.39 8.90 -34.44 -0.31 -14.70 16 6 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.12 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 O -0.34 -7.91 9.07 -40.62 -0.37 -8.28 16 14 C 0.49 10.35 6.20 34.50 0.21 10.56 16 15 O -0.48 -11.36 10.17 -27.44 -0.28 -11.64 16 16 C -0.05 -0.92 5.87 -105.00 -0.62 -1.54 16 17 C -0.05 -0.68 9.52 -39.01 -0.37 -1.05 16 18 C 0.08 0.92 6.48 -39.18 -0.25 0.66 16 19 C 0.08 0.88 6.51 -38.90 -0.25 0.63 16 20 C -0.07 -0.90 9.73 -39.49 -0.38 -1.28 16 21 C 0.02 0.30 6.31 -79.57 -0.50 -0.20 16 22 N 0.02 0.43 3.59 34.15 0.12 0.55 16 23 O -0.17 -3.21 19.14 -29.46 -0.56 -3.78 16 24 O -0.08 -1.56 16.11 -37.24 -0.60 -2.16 16 25 O -0.30 -2.58 10.40 -32.32 -0.34 -2.91 16 26 C 0.02 0.08 7.26 37.40 0.27 0.36 16 27 C 0.02 0.08 7.26 37.40 0.27 0.35 16 28 O -0.29 -2.79 10.42 -32.95 -0.34 -3.14 16 29 H 0.03 0.75 6.06 -51.93 -0.31 0.43 16 30 H 0.06 1.35 7.79 -51.93 -0.40 0.95 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 2.94 5.95 -51.94 -0.31 2.63 16 33 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.18 2.37 7.62 -52.49 -0.40 1.97 16 36 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -32.51 344.29 -7.80 -40.31 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.30 Total: -0.60 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.92 Total: -5.12 kcal Atomic # 7 Polarization: -24.32 SS G_CDS: 0.75 Total: -23.57 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -2.49 Total: -31.91 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.51 -7.80 -40.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.733 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds