Wall clock time and date at job start Tue Mar 31 2020 19:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46936 * 2 1 4 4 H 1.09002 * 109.47088 * 304.99597 * 3 2 1 5 5 C 1.50702 * 109.47149 * 184.99955 * 3 2 1 6 6 H 1.07996 * 119.99834 * 240.00052 * 5 3 2 7 7 C 1.37875 * 119.99778 * 59.99372 * 5 3 2 8 8 N 1.31515 * 120.00558 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99919 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46736 * 60.00157 * 9 7 5 11 11 H 1.48492 * 109.47092 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47183 * 300.00526 * 9 7 5 13 13 O 1.45193 * 109.47703 * 64.99730 * 3 2 1 14 14 C 1.34748 * 117.00116 * 270.00370 * 13 3 2 15 15 O 1.21503 * 120.00068 * 359.97438 * 14 13 3 16 16 C 1.47478 * 120.00264 * 179.97438 * 14 13 3 17 17 C 1.39772 * 120.09978 * 6.59028 * 16 14 13 18 18 C 1.38232 * 119.94516 * 179.97438 * 17 16 14 19 19 C 1.39323 * 119.96670 * 359.90474 * 18 17 16 20 20 C 1.38985 * 120.05422 * 359.97438 * 19 18 17 21 21 C 1.37737 * 120.27449 * 0.23016 * 20 19 18 22 22 N 1.48024 * 120.01905 * 179.83684 * 21 20 19 23 23 O 1.21799 * 119.99474 * 50.99973 * 22 21 20 24 24 O 1.21793 * 119.99872 * 230.99765 * 22 21 20 25 25 O 1.35950 * 120.70285 * 180.26265 * 19 18 17 26 26 C 1.43161 * 116.75305 * 342.75398 * 25 19 18 27 27 C 1.53470 * 108.25604 * 46.31339 * 26 25 19 28 28 O 1.36149 * 119.27357 * 179.86125 * 18 17 16 29 29 H 1.08998 * 109.46851 * 300.00301 * 1 2 3 30 30 H 1.08993 * 109.46671 * 60.00229 * 1 2 3 31 31 H 1.08996 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.08988 * 109.47311 * 239.99950 * 2 1 3 33 33 H 1.08997 * 109.46870 * 119.99042 * 2 1 3 34 34 H 0.96994 * 120.00494 * 179.97438 * 8 7 5 35 35 H 1.07999 * 120.02671 * 359.97438 * 17 16 14 36 36 H 1.07991 * 119.86151 * 179.88847 * 20 19 18 37 37 H 1.08993 * 109.70815 * 286.62192 * 26 25 19 38 38 H 1.09000 * 109.70377 * 166.00151 * 26 25 19 39 39 H 1.08998 * 109.71210 * 180.47634 * 27 26 25 40 40 H 1.08996 * 109.71697 * 59.83131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8813 -1.3818 10 1 6.5976 0.1475 -0.2347 11 1 6.3978 0.2178 -2.6508 12 1 6.4995 2.2815 -1.3822 13 8 1.6559 2.0918 1.2406 14 6 0.4682 2.7280 1.2558 15 8 -0.2273 2.7402 0.2596 16 6 0.0123 3.4094 2.4817 17 6 0.8660 3.5158 3.5834 18 6 0.4355 4.1556 4.7306 19 6 -0.8477 4.6953 4.7867 20 6 -1.6951 4.5914 3.6900 21 6 -1.2740 3.9514 2.5453 22 7 -2.1824 3.8408 1.3819 23 8 -2.7390 4.8333 0.9474 24 8 -2.3733 2.7575 0.8591 25 8 -1.2845 5.3323 5.9055 26 6 -0.5489 5.0956 7.1106 27 6 0.9473 5.2222 6.7933 28 8 1.2774 4.2489 5.7966 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8293 -0.0605 -2.9501 35 1 1.8610 3.0984 3.5383 36 1 -2.6897 5.0093 3.7375 37 1 -0.7626 4.0929 7.4807 38 1 -0.8288 5.8330 7.8629 39 1 1.5312 5.0375 7.6950 40 1 1.1597 6.2221 6.4153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787087686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:29 Heat of formation + Delta-G solvation = -141.021083 kcal Electronic energy + Delta-G solvation = -29940.447552 eV Core-core repulsion = 25496.608267 eV Total energy + Delta-G solvation = -4443.839286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43564 -42.59037 -41.49609 -39.15912 -38.67911 -37.82164 -37.45370 -35.58001 -33.47843 -33.03285 -32.70502 -30.35928 -29.39270 -27.99277 -26.09688 -25.28844 -24.70044 -23.73154 -22.20577 -21.57964 -20.64224 -19.87317 -19.78823 -19.13623 -18.98464 -18.43517 -18.22300 -17.64711 -17.31365 -17.13193 -16.56417 -16.22984 -16.03651 -15.75356 -15.45534 -15.41791 -14.92403 -14.76817 -14.33439 -13.98053 -13.93938 -13.43689 -13.31363 -13.19254 -12.91026 -12.79939 -12.70408 -12.56365 -12.40667 -12.26018 -12.17419 -12.13356 -11.86140 -11.75506 -11.54466 -11.41632 -10.87192 -10.55008 -10.44621 -9.80097 -8.27623 -6.45670 -1.37106 -0.71659 -0.21747 0.15771 1.13625 1.40061 1.45699 1.50359 1.57666 1.59986 1.93288 2.01713 2.38502 2.69239 3.01969 3.10242 3.37879 3.40321 3.55090 3.74889 3.92879 4.10191 4.16705 4.23385 4.30890 4.38190 4.41521 4.55331 4.58911 4.59514 4.66568 4.81577 5.09616 5.15326 5.20599 5.32971 5.47120 5.48708 5.64486 5.87554 5.88320 6.04301 6.41528 6.53289 6.76101 7.24622 8.79075 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003773 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.428968 B = 7419.471177 C = 9058.143359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.128 4.128 3 C 0.228 3.772 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.269 1.269 13 O -0.346 6.346 14 C 0.482 3.518 15 O -0.511 6.511 16 C -0.081 4.081 17 C -0.045 4.045 18 C 0.097 3.903 19 C 0.106 3.894 20 C -0.062 4.062 21 C 0.007 3.993 22 N 0.025 4.975 23 O -0.159 6.159 24 O -0.136 6.136 25 O -0.295 6.295 26 C 0.010 3.990 27 C 0.006 3.994 28 O -0.299 6.299 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.271 0.729 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 10.400 24.403 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C 0.175 3.825 4 H 0.025 0.975 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.805 3.195 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.194 1.194 13 O -0.262 6.262 14 C 0.326 3.674 15 O -0.401 6.401 16 C -0.084 4.084 17 C -0.065 4.065 18 C 0.049 3.951 19 C 0.058 3.942 20 C -0.081 4.081 21 C -0.075 4.075 22 N 0.551 4.449 23 O -0.376 6.376 24 O -0.360 6.360 25 O -0.208 6.208 26 C -0.063 4.063 27 C -0.068 4.068 28 O -0.213 6.213 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.193 0.807 36 H 0.202 0.798 37 H 0.114 0.886 38 H 0.189 0.811 39 H 0.185 0.815 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.692 10.394 24.592 27.299 hybrid contribution 0.430 -0.198 -1.123 1.219 sum -5.263 10.196 23.469 26.124 Atomic orbital electron populations 1.21684 0.96167 1.00521 1.00152 1.21883 0.94360 0.97824 1.02552 1.20509 0.94790 0.89322 0.77862 0.97518 1.21271 0.90015 1.40398 1.07202 0.91153 1.25817 1.04312 0.93771 0.94264 1.70015 1.37628 1.37658 1.09811 0.85242 0.77500 0.78761 0.77960 1.18599 1.20357 1.19429 1.86488 1.33806 1.62676 1.43226 1.21126 0.81047 0.77422 0.87840 1.90958 1.54827 1.58440 1.35909 1.18583 0.92946 1.02419 0.94425 1.20725 1.00926 0.97464 0.87355 1.18764 0.88538 0.98468 0.89281 1.18458 0.90146 0.96624 0.89006 1.19906 1.02333 0.97646 0.88213 1.20503 0.90325 1.08039 0.88680 1.43432 0.99843 1.00326 1.01333 1.94467 1.49523 1.27996 1.65640 1.94628 1.65992 1.15575 1.59764 1.86349 1.54736 1.64031 1.15715 1.24307 0.90807 1.06999 0.84222 1.24315 0.97491 0.92350 0.92609 1.86459 1.47355 1.57780 1.29704 0.94692 0.94689 0.92050 0.89320 0.93245 0.91960 0.80728 0.79786 0.88637 0.81123 0.81463 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.57 71.98 0.62 -5.38 16 2 C -0.13 -6.62 5.49 30.60 0.17 -6.45 16 3 C 0.23 12.61 2.25 29.85 0.07 12.68 16 4 H 0.01 0.44 7.16 -2.39 -0.02 0.42 16 5 C -0.55 -31.17 8.90 25.60 0.23 -30.94 16 6 H 0.07 3.83 7.81 -2.91 -0.02 3.81 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.75 11.29 21.45 0.24 -52.51 16 9 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 11 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 O -0.35 -16.80 9.07 -56.59 -0.51 -17.32 16 14 C 0.48 21.77 6.20 70.26 0.44 22.21 16 15 O -0.51 -26.16 10.17 27.64 0.28 -25.88 16 16 C -0.08 -2.81 5.87 -20.11 -0.12 -2.93 16 17 C -0.05 -1.23 9.52 22.64 0.22 -1.01 16 18 C 0.10 1.97 6.48 22.53 0.15 2.12 16 19 C 0.11 1.97 6.51 22.71 0.15 2.12 16 20 C -0.06 -1.39 9.73 22.33 0.22 -1.17 16 21 C 0.01 0.21 6.31 36.61 0.23 0.44 16 22 N 0.03 0.97 3.59 -45.88 -0.16 0.80 16 23 O -0.16 -6.00 19.14 18.89 0.36 -5.64 16 24 O -0.14 -5.97 16.11 26.33 0.42 -5.54 16 25 O -0.29 -3.77 10.40 -80.82 -0.84 -4.61 16 26 C 0.01 0.04 7.26 72.14 0.52 0.56 16 27 C 0.01 0.03 7.26 72.14 0.52 0.56 16 28 O -0.30 -4.66 10.42 -83.07 -0.87 -5.52 16 29 H 0.03 1.60 6.06 -2.39 -0.01 1.59 16 30 H 0.03 1.76 7.79 -2.39 -0.02 1.74 16 31 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.09 4.97 5.95 -2.39 -0.01 4.96 16 33 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.18 4.71 7.62 -2.91 -0.02 4.69 16 36 H 0.18 3.30 8.06 -2.92 -0.02 3.27 16 37 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.17 -0.59 8.14 -2.39 -0.02 -0.61 16 39 H 0.17 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -75.96 344.29 5.90 -70.06 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.10 Total: 7.19 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 3.85 Total: -5.74 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.08 Total: -51.71 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -1.15 Total: -64.50 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -75.96 5.90 -70.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.965 kcal (2) G-P(sol) polarization free energy of solvation -75.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds