Wall clock time and date at job start Tue Mar 31 2020 19:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 H 1.08997 * 109.47361 * 54.99827 * 3 2 1 5 5 C 1.50708 * 109.47416 * 175.00003 * 3 2 1 6 6 H 1.07999 * 119.99812 * 120.00011 * 5 3 2 7 7 C 1.37877 * 119.99487 * 300.00121 * 5 3 2 8 8 N 1.31519 * 119.99758 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00344 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47044 * 90.00001 * 9 7 5 11 11 H 1.48499 * 109.47139 * 210.00437 * 9 7 5 12 12 H 1.48497 * 109.46942 * 330.00266 * 9 7 5 13 13 O 1.45200 * 109.47070 * 294.99647 * 3 2 1 14 14 C 1.34750 * 116.99567 * 90.00253 * 13 3 2 15 15 O 1.21499 * 120.00403 * 359.97438 * 14 13 3 16 16 C 1.47476 * 119.99683 * 180.02562 * 14 13 3 17 17 C 1.39775 * 120.10974 * 55.27091 * 16 14 13 18 18 C 1.38224 * 119.95029 * 180.02562 * 17 16 14 19 19 C 1.39313 * 119.96897 * 359.88222 * 18 17 16 20 20 C 1.38993 * 120.05448 * 0.19275 * 19 18 17 21 21 C 1.37735 * 120.27099 * 359.86549 * 20 19 18 22 22 N 1.48023 * 120.01638 * 180.02562 * 21 20 19 23 23 O 1.21802 * 119.99755 * 6.55725 * 22 21 20 24 24 O 1.21796 * 119.99862 * 186.54932 * 22 21 20 25 25 O 1.35955 * 120.70320 * 180.47639 * 19 18 17 26 26 C 1.43184 * 116.72719 * 342.45132 * 25 19 18 27 27 C 1.53467 * 108.24301 * 46.43127 * 26 25 19 28 28 O 1.36142 * 119.27597 * 179.69868 * 18 17 16 29 29 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47339 * 300.00385 * 1 2 3 31 31 H 1.09005 * 109.47256 * 60.00085 * 1 2 3 32 32 H 1.09001 * 109.47339 * 239.99614 * 2 1 3 33 33 H 1.09005 * 109.47256 * 119.99915 * 2 1 3 34 34 H 0.96992 * 120.00119 * 179.97438 * 8 7 5 35 35 H 1.08001 * 120.02416 * 0.03221 * 17 16 14 36 36 H 1.08002 * 119.86098 * 179.83957 * 20 19 18 37 37 H 1.09000 * 109.74737 * 286.72374 * 26 25 19 38 38 H 1.09003 * 109.68507 * 166.09917 * 26 25 19 39 39 H 1.09000 * 109.70954 * 180.49161 * 27 26 25 40 40 H 1.08994 * 109.71194 * 59.85283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8794 1.3359 9 14 3.0962 0.1100 2.5707 10 1 2.8743 -1.3261 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 8 1.6559 2.0916 -1.2407 14 6 0.4682 2.7279 -1.2560 15 8 -0.2277 2.7395 -0.2601 16 6 0.0125 3.4091 -2.4820 17 6 -0.0705 2.7044 -3.6863 18 6 -0.4975 3.3463 -4.8335 19 6 -0.8471 4.6941 -4.7877 20 6 -0.7630 5.3948 -3.5902 21 6 -0.3371 4.7614 -2.4437 22 7 -0.2501 5.5129 -1.1713 23 8 -0.6668 6.6557 -1.1094 24 8 0.2380 4.9883 -0.1864 25 8 -1.2783 5.3378 -5.9049 26 6 -0.9927 4.7107 -7.1600 27 6 -1.3556 3.2238 -7.0477 28 8 -0.5672 2.6483 -6.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8770 0.4817 2.1128 35 1 0.1989 1.6591 -3.7203 36 1 -1.0323 6.4402 -3.5588 37 1 0.0676 4.8139 -7.3905 38 1 -1.5872 5.1757 -7.9465 39 1 -1.1390 2.7203 -7.9899 40 1 -2.4143 3.1207 -6.8101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787087693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:33 Heat of formation + Delta-G solvation = -115.047205 kcal Electronic energy + Delta-G solvation = -30021.218538 eV Core-core repulsion = 25578.505564 eV Total energy + Delta-G solvation = -4442.712974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.33914 -41.72683 -39.98222 -38.14431 -38.01255 -36.47804 -35.90307 -33.64829 -32.26629 -31.98970 -31.70813 -29.68897 -27.91239 -26.91814 -25.10954 -23.97925 -23.08382 -22.39848 -21.19498 -20.20078 -19.55946 -18.91985 -18.63932 -17.98871 -17.62836 -17.34200 -16.79911 -16.59688 -16.23068 -15.76597 -15.58560 -15.23376 -15.11257 -14.63116 -14.62399 -14.37958 -13.62527 -13.44596 -13.21521 -12.84217 -12.49962 -12.15697 -11.94054 -11.79506 -11.71545 -11.56483 -11.37492 -11.31878 -11.26405 -10.95972 -10.83732 -10.74822 -10.18974 -9.99027 -9.63108 -9.55580 -9.52196 -9.08793 -8.95051 -8.63642 -6.20495 -4.23049 -0.39304 0.31480 1.21981 1.28982 2.20811 2.39172 2.53878 2.83190 3.20702 3.25078 3.34675 3.38192 3.41547 3.82926 4.12189 4.19809 4.22765 4.29317 4.45217 4.62260 4.68658 4.83207 4.98207 5.07948 5.09154 5.24848 5.42283 5.51408 5.77445 5.88013 5.94701 6.08118 6.37550 6.43534 6.53184 6.57160 6.60916 6.71852 6.99388 7.32329 7.48448 7.75181 8.13154 8.49560 8.85563 9.35895 10.91488 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003658 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.705819 B = 7653.507865 C = 8493.976580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.055 0.945 5 C -0.525 4.525 6 H 0.087 0.913 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.289 1.289 12 H -0.257 1.257 13 O -0.328 6.328 14 C 0.497 3.503 15 O -0.470 6.470 16 C -0.028 4.028 17 C -0.070 4.070 18 C 0.099 3.901 19 C 0.068 3.932 20 C -0.054 4.054 21 C -0.004 4.004 22 N 0.023 4.977 23 O -0.166 6.166 24 O -0.108 6.108 25 O -0.294 6.294 26 C 0.018 3.982 27 C 0.016 3.984 28 O -0.291 6.291 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.270 0.730 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.087 0.913 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.545 5.121 -19.699 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.144 3.856 4 H 0.073 0.927 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.703 3.297 10 H -0.200 1.200 11 H -0.216 1.216 12 H -0.182 1.182 13 O -0.243 6.243 14 C 0.337 3.663 15 O -0.357 6.357 16 C -0.031 4.031 17 C -0.089 4.089 18 C 0.052 3.948 19 C 0.021 3.979 20 C -0.074 4.074 21 C -0.088 4.088 22 N 0.546 4.454 23 O -0.377 6.377 24 O -0.332 6.332 25 O -0.208 6.208 26 C -0.058 4.058 27 C -0.059 4.059 28 O -0.204 6.204 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.188 0.812 36 H 0.189 0.811 37 H 0.105 0.895 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.632 4.721 -19.983 25.806 hybrid contribution -0.466 -0.318 0.810 0.987 sum -16.098 4.403 -19.173 25.419 Atomic orbital electron populations 1.21916 0.97019 1.00117 1.01771 1.22394 0.94307 0.99552 1.02424 1.21116 0.96552 0.87925 0.79982 0.92725 1.20747 0.87495 1.39981 1.07991 0.89501 1.24707 0.94944 0.95250 0.97269 1.69830 1.08509 1.44281 1.29804 0.87020 0.81282 0.79967 0.81380 1.19989 1.21591 1.18179 1.86613 1.32603 1.62058 1.43055 1.20253 0.82253 0.77657 0.86158 1.90886 1.55194 1.56653 1.32977 1.18911 0.98950 0.91039 0.94201 1.20516 0.99696 1.02005 0.86661 1.18920 0.99206 0.89027 0.87639 1.18528 1.01826 0.89365 0.88149 1.19900 0.97763 1.02030 0.87660 1.20535 1.11048 0.91363 0.85805 1.43307 0.99136 1.00785 1.02151 1.94498 1.50288 1.02179 1.90746 1.94762 1.43213 1.70459 1.24800 1.86333 1.74620 1.47469 1.12416 1.23822 1.03836 0.93532 0.84569 1.23838 0.96229 0.94404 0.91437 1.86439 1.67401 1.46379 1.20193 0.93788 0.92251 0.93916 0.91161 0.91520 0.92037 0.81216 0.81090 0.89509 0.85065 0.84994 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.56 37.15 0.32 -2.58 16 2 C -0.15 -3.30 5.15 -26.74 -0.14 -3.44 16 3 C 0.20 4.94 1.84 -27.88 -0.05 4.89 16 4 H 0.06 1.46 6.22 -51.93 -0.32 1.14 16 5 C -0.52 -15.01 9.48 -34.44 -0.33 -15.34 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 7 C 0.08 2.34 5.45 -17.82 -0.10 2.25 16 8 N -0.89 -26.73 13.96 55.43 0.77 -25.95 16 9 Si 0.87 21.59 24.41 -169.99 -4.15 17.44 16 10 H -0.27 -6.41 6.83 56.52 0.39 -6.03 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.25 6.53 56.52 0.37 -5.89 16 13 O -0.33 -7.44 9.82 -40.63 -0.40 -7.84 16 14 C 0.50 10.10 4.42 34.49 0.15 10.25 16 15 O -0.47 -10.45 11.95 -27.28 -0.33 -10.78 16 16 C -0.03 -0.46 5.75 -105.00 -0.60 -1.06 16 17 C -0.07 -0.89 9.70 -39.01 -0.38 -1.26 16 18 C 0.10 1.06 6.48 -39.19 -0.25 0.80 16 19 C 0.07 0.70 6.51 -38.90 -0.25 0.45 16 20 C -0.05 -0.64 9.46 -39.49 -0.37 -1.01 16 21 C 0.00 -0.06 6.85 -79.57 -0.55 -0.61 16 22 N 0.02 0.43 4.45 34.15 0.15 0.58 16 23 O -0.17 -2.85 18.46 -29.46 -0.54 -3.40 16 24 O -0.11 -2.31 14.99 -37.09 -0.56 -2.87 16 25 O -0.29 -2.43 10.41 -32.34 -0.34 -2.76 16 26 C 0.02 0.07 7.26 37.40 0.27 0.35 16 27 C 0.02 0.07 7.26 37.40 0.27 0.34 16 28 O -0.29 -2.54 10.42 -32.94 -0.34 -2.88 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.19 7.79 -51.93 -0.40 0.79 16 31 H 0.04 0.78 6.06 -51.93 -0.31 0.46 16 32 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 33 H 0.07 1.53 3.22 -51.93 -0.17 1.37 16 34 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 36 H 0.17 1.72 7.61 -52.49 -0.40 1.32 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.13 0.14 8.14 -51.93 -0.42 -0.28 16 39 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -34.40 337.65 -6.82 -41.22 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.17 Total: -1.87 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -2.01 Total: -5.98 kcal Atomic # 7 Polarization: -26.30 SS G_CDS: 0.93 Total: -25.37 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -2.50 Total: -30.53 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.40 -6.82 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.825 kcal (2) G-P(sol) polarization free energy of solvation -34.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds