Wall clock time and date at job start Tue Mar 31 2020 19:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47312 * 2 1 4 4 H 1.08997 * 109.47361 * 54.99827 * 3 2 1 5 5 C 1.50708 * 109.47416 * 175.00003 * 3 2 1 6 6 H 1.07999 * 119.99812 * 120.00011 * 5 3 2 7 7 C 1.37877 * 119.99487 * 300.00121 * 5 3 2 8 8 N 1.31519 * 119.99758 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00344 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47044 * 90.00001 * 9 7 5 11 11 H 1.48499 * 109.47139 * 210.00437 * 9 7 5 12 12 H 1.48497 * 109.46942 * 330.00266 * 9 7 5 13 13 O 1.45200 * 109.47070 * 294.99647 * 3 2 1 14 14 C 1.34750 * 116.99567 * 90.00253 * 13 3 2 15 15 O 1.21499 * 120.00403 * 359.97438 * 14 13 3 16 16 C 1.47476 * 119.99683 * 180.02562 * 14 13 3 17 17 C 1.39775 * 120.10974 * 55.27091 * 16 14 13 18 18 C 1.38224 * 119.95029 * 180.02562 * 17 16 14 19 19 C 1.39313 * 119.96897 * 359.88222 * 18 17 16 20 20 C 1.38993 * 120.05448 * 0.19275 * 19 18 17 21 21 C 1.37735 * 120.27099 * 359.86549 * 20 19 18 22 22 N 1.48023 * 120.01638 * 180.02562 * 21 20 19 23 23 O 1.21802 * 119.99755 * 6.55725 * 22 21 20 24 24 O 1.21796 * 119.99862 * 186.54932 * 22 21 20 25 25 O 1.35955 * 120.70320 * 180.47639 * 19 18 17 26 26 C 1.43184 * 116.72719 * 342.45132 * 25 19 18 27 27 C 1.53467 * 108.24301 * 46.43127 * 26 25 19 28 28 O 1.36142 * 119.27597 * 179.69868 * 18 17 16 29 29 H 1.09000 * 109.47165 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47339 * 300.00385 * 1 2 3 31 31 H 1.09005 * 109.47256 * 60.00085 * 1 2 3 32 32 H 1.09001 * 109.47339 * 239.99614 * 2 1 3 33 33 H 1.09005 * 109.47256 * 119.99915 * 2 1 3 34 34 H 0.96992 * 120.00119 * 179.97438 * 8 7 5 35 35 H 1.08001 * 120.02416 * 0.03221 * 17 16 14 36 36 H 1.08002 * 119.86098 * 179.83957 * 20 19 18 37 37 H 1.09000 * 109.74737 * 286.72374 * 26 25 19 38 38 H 1.09003 * 109.68507 * 166.09917 * 26 25 19 39 39 H 1.09000 * 109.70954 * 180.49161 * 27 26 25 40 40 H 1.08994 * 109.71194 * 59.85283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1432 0.8783 1.2280 8 7 5.4540 0.8794 1.3359 9 14 3.0962 0.1100 2.5707 10 1 2.8743 -1.3261 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 8 1.6559 2.0916 -1.2407 14 6 0.4682 2.7279 -1.2560 15 8 -0.2277 2.7395 -0.2601 16 6 0.0125 3.4091 -2.4820 17 6 -0.0705 2.7044 -3.6863 18 6 -0.4975 3.3463 -4.8335 19 6 -0.8471 4.6941 -4.7877 20 6 -0.7630 5.3948 -3.5902 21 6 -0.3371 4.7614 -2.4437 22 7 -0.2501 5.5129 -1.1713 23 8 -0.6668 6.6557 -1.1094 24 8 0.2380 4.9883 -0.1864 25 8 -1.2783 5.3378 -5.9049 26 6 -0.9927 4.7107 -7.1600 27 6 -1.3556 3.2238 -7.0477 28 8 -0.5672 2.6483 -6.0003 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.8770 0.4817 2.1128 35 1 0.1989 1.6591 -3.7203 36 1 -1.0323 6.4402 -3.5588 37 1 0.0676 4.8139 -7.3905 38 1 -1.5872 5.1757 -7.9465 39 1 -1.1390 2.7203 -7.9899 40 1 -2.4143 3.1207 -6.8101 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787087693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:32 Heat of formation + Delta-G solvation = -137.817122 kcal Electronic energy + Delta-G solvation = -30022.205916 eV Core-core repulsion = 25578.505564 eV Total energy + Delta-G solvation = -4443.700352 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.54545 -42.62808 -41.56408 -39.21686 -38.69027 -37.96009 -37.51910 -35.57000 -33.97096 -33.08870 -32.76963 -30.38885 -29.80372 -28.09865 -26.10711 -25.06149 -24.70563 -23.78899 -22.43929 -21.76151 -20.67795 -19.96197 -19.82807 -19.27335 -18.83066 -18.61584 -18.50131 -18.11868 -17.39255 -16.99444 -16.70875 -16.24959 -16.01603 -15.77538 -15.49872 -15.42407 -15.30894 -14.86941 -14.30336 -14.06989 -14.03333 -13.84931 -13.61874 -13.26457 -13.13415 -12.88556 -12.79008 -12.59246 -12.43034 -12.35088 -12.18549 -12.02800 -11.89068 -11.75523 -11.52820 -11.37320 -11.15648 -10.74691 -10.46844 -9.81613 -8.44916 -6.53543 -1.59659 -0.67093 -0.00144 0.08345 1.02882 1.22327 1.32349 1.41736 1.43955 1.50497 1.86789 2.04695 2.20279 2.68227 2.87510 3.05949 3.36795 3.38810 3.47549 3.70677 3.92195 4.05776 4.08942 4.14213 4.17239 4.22900 4.25861 4.31438 4.51807 4.56579 4.59539 4.63863 4.92318 4.93199 5.00901 5.04114 5.29286 5.32835 5.46243 5.54964 5.86406 6.09252 6.31974 6.48829 6.69118 7.10190 8.71140 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.003658 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.705819 B = 7653.507865 C = 8493.976580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.145 4.145 3 C 0.202 3.798 4 H 0.030 0.970 5 C -0.540 4.540 6 H 0.045 0.955 7 C 0.033 3.967 8 N -0.929 5.929 9 Si 0.935 3.065 10 H -0.244 1.244 11 H -0.283 1.283 12 H -0.257 1.257 13 O -0.342 6.342 14 C 0.497 3.503 15 O -0.494 6.494 16 C -0.055 4.055 17 C -0.066 4.066 18 C 0.117 3.883 19 C 0.088 3.912 20 C -0.043 4.043 21 C -0.021 4.021 22 N 0.026 4.974 23 O -0.115 6.115 24 O -0.213 6.213 25 O -0.295 6.295 26 C 0.009 3.991 27 C 0.007 3.993 28 O -0.297 6.297 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.276 0.724 35 H 0.179 0.821 36 H 0.194 0.806 37 H 0.093 0.907 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.393 4.848 -23.155 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.183 4.183 3 C 0.148 3.852 4 H 0.048 0.952 5 C -0.578 4.578 6 H 0.063 0.937 7 C -0.167 4.167 8 N -0.567 5.567 9 Si 0.760 3.240 10 H -0.169 1.169 11 H -0.210 1.210 12 H -0.182 1.182 13 O -0.258 6.258 14 C 0.339 3.661 15 O -0.382 6.382 16 C -0.058 4.058 17 C -0.085 4.085 18 C 0.070 3.930 19 C 0.041 3.959 20 C -0.062 4.062 21 C -0.105 4.105 22 N 0.544 4.456 23 O -0.345 6.345 24 O -0.412 6.412 25 O -0.208 6.208 26 C -0.065 4.065 27 C -0.067 4.067 28 O -0.210 6.210 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.196 0.804 36 H 0.211 0.789 37 H 0.111 0.889 38 H 0.189 0.811 39 H 0.186 0.814 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.401 4.288 -23.368 30.051 hybrid contribution 0.306 0.027 1.388 1.421 sum -18.095 4.315 -21.980 28.796 Atomic orbital electron populations 1.21835 0.94514 1.02277 1.01352 1.22273 0.96494 0.96900 1.02595 1.20771 0.94112 0.89903 0.80402 0.95187 1.20931 0.89513 1.39959 1.07375 0.93701 1.25525 0.96099 0.95545 0.99482 1.69951 1.10335 1.45454 1.30994 0.86048 0.79330 0.80473 0.78154 1.16905 1.21013 1.18190 1.86575 1.34555 1.62903 1.41741 1.20862 0.80893 0.76758 0.87537 1.90845 1.55619 1.57185 1.34540 1.18647 1.01990 0.91611 0.93564 1.20553 0.99408 1.02305 0.86249 1.18797 0.97330 0.89066 0.87851 1.18447 0.99919 0.88958 0.88600 1.20095 0.96482 1.02858 0.86768 1.20574 1.13680 0.91109 0.85132 1.43678 0.98235 1.00800 1.02926 1.94413 1.47043 1.02211 1.90792 1.94795 1.48129 1.71435 1.26883 1.86366 1.73801 1.47749 1.12923 1.24300 1.05250 0.93597 0.83317 1.24343 0.96353 0.94711 0.91299 1.86458 1.67760 1.46790 1.19966 0.90150 0.93656 0.93501 0.90160 0.92032 0.91493 0.80378 0.78914 0.88874 0.81119 0.81430 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.56 71.98 0.62 -4.74 16 2 C -0.15 -6.45 5.15 30.59 0.16 -6.29 16 3 C 0.20 10.62 1.84 29.85 0.06 10.67 16 4 H 0.03 1.72 6.22 -2.39 -0.01 1.70 16 5 C -0.54 -32.81 9.48 25.60 0.24 -32.57 16 6 H 0.04 3.00 8.06 -2.91 -0.02 2.98 16 7 C 0.03 1.99 5.45 84.65 0.46 2.45 16 8 N -0.93 -58.13 13.96 21.45 0.30 -57.83 16 9 Si 0.94 45.42 24.41 68.60 1.67 47.09 16 10 H -0.24 -10.70 6.83 99.48 0.68 -10.02 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.26 -12.44 6.53 99.48 0.65 -11.79 16 13 O -0.34 -16.49 9.82 -56.61 -0.56 -17.05 16 14 C 0.50 21.41 4.42 70.26 0.31 21.72 16 15 O -0.49 -23.41 11.95 27.50 0.33 -23.08 16 16 C -0.06 -1.83 5.75 -20.11 -0.12 -1.95 16 17 C -0.07 -1.62 9.70 22.64 0.22 -1.40 16 18 C 0.12 2.18 6.48 22.53 0.15 2.33 16 19 C 0.09 1.54 6.51 22.71 0.15 1.69 16 20 C -0.04 -0.92 9.46 22.33 0.21 -0.71 16 21 C -0.02 -0.65 6.85 36.62 0.25 -0.40 16 22 N 0.03 1.00 4.45 -45.88 -0.20 0.80 16 23 O -0.11 -3.90 18.46 18.88 0.35 -3.55 16 24 O -0.21 -9.95 14.99 26.19 0.39 -9.56 16 25 O -0.29 -3.48 10.41 -80.86 -0.84 -4.32 16 26 C 0.01 0.03 7.26 72.14 0.52 0.55 16 27 C 0.01 0.02 7.26 72.14 0.52 0.55 16 28 O -0.30 -4.02 10.42 -82.98 -0.86 -4.88 16 29 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 31 H 0.05 1.69 6.06 -2.38 -0.01 1.68 16 32 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.06 2.78 3.22 -2.38 -0.01 2.77 16 34 H 0.28 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.18 3.96 8.06 -2.91 -0.02 3.94 16 36 H 0.19 3.25 7.61 -2.91 -0.02 3.22 16 37 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.17 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H 0.17 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 Total: -1.00 -82.26 337.65 5.35 -76.91 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.02 Total: 3.57 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 3.75 Total: -8.10 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.09 Total: -57.04 kcal Atomic # 8 Polarization: -61.25 SS G_CDS: -1.19 Total: -62.44 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.67 Total: 47.09 kcal Total: -82.26 5.35 -76.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787087693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.908 kcal (2) G-P(sol) polarization free energy of solvation -82.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds