Wall clock time and date at job start Tue Mar 31 2020 19:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47514 * 2 1 4 4 H 1.09000 * 109.46969 * 54.99866 * 3 2 1 5 5 C 1.50699 * 109.47384 * 175.00057 * 3 2 1 6 6 H 1.08001 * 119.99554 * 120.00090 * 5 3 2 7 7 C 1.37871 * 120.00046 * 300.00095 * 5 3 2 8 8 N 1.31513 * 119.99936 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47168 * 89.99728 * 9 7 5 11 11 H 1.48497 * 109.47190 * 210.00173 * 9 7 5 12 12 H 1.48502 * 109.47012 * 329.99553 * 9 7 5 13 13 O 1.45202 * 109.46662 * 295.00047 * 3 2 1 14 14 C 1.34754 * 116.99763 * 90.00236 * 13 3 2 15 15 O 1.21513 * 119.99968 * 359.97438 * 14 13 3 16 16 C 1.47411 * 120.00014 * 180.27227 * 14 13 3 17 17 C 1.39830 * 120.14354 * 359.72194 * 16 14 13 18 18 C 1.37723 * 119.94301 * 179.97438 * 17 16 14 19 19 N 1.48016 * 119.83359 * 180.08651 * 18 17 16 20 20 O 1.21802 * 119.99815 * 0.02562 * 19 18 17 21 21 O 1.21799 * 120.00313 * 179.97438 * 19 18 17 22 22 C 1.38508 * 120.33996 * 0.06354 * 18 17 16 23 23 C 1.38592 * 120.42430 * 0.02562 * 22 18 17 24 24 C 1.38996 * 119.90545 * 359.61430 * 23 22 18 25 25 O 1.35801 * 120.86817 * 180.02562 * 24 23 22 26 26 C 1.43178 * 116.79598 * 343.16704 * 25 24 23 27 27 C 1.53467 * 108.22704 * 46.00453 * 26 25 24 28 28 O 1.36136 * 119.37183 * 179.76391 * 23 22 18 29 29 H 1.09000 * 109.46843 * 299.99787 * 1 2 3 30 30 H 1.09000 * 109.47031 * 59.99585 * 1 2 3 31 31 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47212 * 239.99817 * 2 1 3 33 33 H 1.09000 * 109.47031 * 120.00415 * 2 1 3 34 34 H 0.97006 * 119.99920 * 179.97438 * 8 7 5 35 35 H 1.07996 * 120.02649 * 359.95287 * 17 16 14 36 36 H 1.07996 * 119.79194 * 179.97438 * 22 18 17 37 37 H 1.09003 * 109.71040 * 286.32499 * 26 25 24 38 38 H 1.08994 * 109.74909 * 165.71346 * 26 25 24 39 39 H 1.09010 * 109.70572 * 180.63221 * 27 26 25 40 40 H 1.09004 * 109.70858 * 60.01749 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1727 9 14 6.0051 0.8799 1.3810 10 1 6.4429 2.1128 2.0835 11 1 6.4391 -0.3112 2.1544 12 1 6.6131 0.8392 0.0268 13 8 1.6560 2.0916 -1.2407 14 6 0.4682 2.7279 -1.2560 15 8 -0.2276 2.7396 -0.2599 16 6 0.0101 3.4042 -2.4831 17 6 0.8082 3.3923 -3.6312 18 6 0.3758 4.0250 -4.7755 19 7 1.2218 4.0092 -5.9900 20 8 2.2970 3.4372 -5.9758 21 8 0.8422 4.5674 -7.0039 22 6 -0.8467 4.6757 -4.7959 23 6 -1.6487 4.6982 -3.6658 24 6 -1.2294 4.0578 -2.5056 25 8 -1.9998 4.0671 -1.3873 26 6 -3.0446 5.0444 -1.3314 27 6 -3.7846 5.0335 -2.6759 28 8 -2.8441 5.3482 -3.7083 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8294 -0.0620 2.9494 35 1 1.7629 2.8876 -3.6204 36 1 -1.1769 5.1693 -5.6979 37 1 -2.6160 6.0311 -1.1558 38 1 -3.7382 4.7966 -0.5280 39 1 -4.5802 5.7786 -2.6636 40 1 -4.2087 4.0452 -2.8540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787088517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:36 Heat of formation + Delta-G solvation = -129.894788 kcal Electronic energy + Delta-G solvation = -29743.259412 eV Core-core repulsion = 25299.902598 eV Total energy + Delta-G solvation = -4443.356813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.35720 -41.77200 -39.75062 -38.14213 -37.82070 -36.58578 -35.82113 -33.61284 -32.15286 -31.87986 -31.26264 -29.52037 -27.42645 -26.63396 -24.89866 -24.87166 -23.17115 -21.58102 -21.36739 -19.94969 -19.32163 -18.87576 -18.68462 -17.71456 -17.57458 -17.32882 -16.87788 -16.54603 -16.06996 -15.62721 -15.45712 -15.18769 -14.79108 -14.68919 -14.44990 -14.26669 -13.49927 -13.04155 -12.90741 -12.75512 -12.29822 -11.96008 -11.66939 -11.59103 -11.52713 -11.44668 -11.29933 -11.25314 -11.17082 -11.15141 -10.97686 -10.72609 -10.31644 -9.91456 -9.78110 -9.46412 -9.41321 -8.89835 -8.87566 -8.50378 -6.22959 -4.30295 -0.35444 0.28387 1.09592 1.20986 2.31035 2.57116 2.62253 3.09093 3.23657 3.29899 3.35371 3.41118 3.64711 4.01174 4.20571 4.29106 4.31394 4.35752 4.51094 4.55237 4.82525 5.00089 5.07178 5.09589 5.16434 5.33319 5.65922 5.67266 6.16381 6.22188 6.24918 6.27548 6.38102 6.68846 6.78477 6.87314 7.09049 7.12478 7.55165 7.60182 7.66306 7.84271 8.08222 8.47237 8.80137 9.35232 10.83767 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003875 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.361730 B = 7223.856984 C = 9035.911483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.224 3.776 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.071 0.929 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 O -0.348 6.348 14 C 0.499 3.501 15 O -0.482 6.482 16 C -0.112 4.112 17 C 0.010 3.990 18 C -0.060 4.060 19 N 0.036 4.964 20 O -0.147 6.147 21 O -0.165 6.165 22 C -0.030 4.030 23 C 0.038 3.962 24 C 0.162 3.838 25 O -0.256 6.256 26 C 0.010 3.990 27 C 0.018 3.982 28 O -0.295 6.295 29 H 0.053 0.947 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.111 0.889 34 H 0.267 0.733 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.088 0.912 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 9.136 -9.726 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.561 4.561 6 H 0.089 0.911 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.194 1.194 13 O -0.265 6.265 14 C 0.341 3.659 15 O -0.371 6.371 16 C -0.115 4.115 17 C -0.009 4.009 18 C -0.144 4.144 19 N 0.556 4.444 20 O -0.365 6.365 21 O -0.379 6.379 22 C -0.050 4.050 23 C -0.008 4.008 24 C 0.112 3.888 25 O -0.166 6.166 26 C -0.065 4.065 27 C -0.057 4.057 28 O -0.210 6.210 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.198 0.802 36 H 0.186 0.814 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.380 9.040 -8.573 19.793 hybrid contribution 0.787 0.003 0.055 0.789 sum -14.592 9.043 -8.519 19.164 Atomic orbital electron populations 1.21862 0.98395 0.99095 1.00657 1.22045 0.92598 0.99238 1.03608 1.20775 0.95195 0.88730 0.78052 0.93301 1.21035 0.89436 1.39204 1.06412 0.91113 1.24868 0.99316 0.94615 0.94997 1.69885 1.35470 1.37709 1.09486 0.86275 0.83739 0.77697 0.78494 1.20409 1.20933 1.19418 1.86542 1.32932 1.62291 1.44714 1.20145 0.81848 0.77664 0.86264 1.90855 1.55061 1.57216 1.34015 1.18704 0.92318 1.05669 0.94779 1.21265 1.00350 0.91558 0.87755 1.20413 0.94856 1.11582 0.87534 1.43326 1.00833 0.98452 1.01801 1.94607 1.08343 1.43121 1.90387 1.94522 1.76959 1.44883 1.21507 1.20096 0.90720 0.96127 0.98073 1.18136 0.89181 1.01256 0.92230 1.19222 0.89950 0.93818 0.85791 1.86700 1.42560 1.53081 1.34267 1.23944 0.89980 0.93273 0.99290 1.23819 0.91104 1.04542 0.86271 1.86363 1.22228 1.61863 1.50518 0.92762 0.95120 0.94729 0.93760 0.87138 0.92336 0.80164 0.81448 0.89429 0.84829 0.85051 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.56 37.16 0.32 -2.72 16 2 C -0.14 -3.30 5.49 -26.73 -0.15 -3.44 16 3 C 0.22 5.75 2.25 -27.88 -0.06 5.69 16 4 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 5 C -0.52 -14.21 8.90 -34.44 -0.31 -14.52 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.45 11.29 55.43 0.63 -23.83 16 9 Si 0.91 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 O -0.35 -7.90 9.05 -40.64 -0.37 -8.26 16 14 C 0.50 10.08 6.34 34.47 0.22 10.30 16 15 O -0.48 -10.62 12.28 -26.68 -0.33 -10.95 16 16 C -0.11 -1.78 5.89 -104.85 -0.62 -2.40 16 17 C 0.01 0.15 9.11 -39.17 -0.36 -0.21 16 18 C -0.06 -0.79 6.84 -80.04 -0.55 -1.34 16 19 N 0.04 0.52 4.45 33.92 0.15 0.67 16 20 O -0.15 -2.30 18.43 -29.46 -0.54 -2.85 16 21 O -0.16 -2.34 18.43 -29.46 -0.54 -2.88 16 22 C -0.03 -0.34 9.46 -39.35 -0.37 -0.71 16 23 C 0.04 0.43 6.49 -39.17 -0.25 0.18 16 24 C 0.16 2.21 6.51 -38.59 -0.25 1.96 16 25 O -0.26 -3.45 8.42 -47.36 -0.40 -3.84 16 26 C 0.01 0.08 7.26 37.40 0.27 0.35 16 27 C 0.02 0.11 7.26 37.40 0.27 0.38 16 28 O -0.30 -2.75 10.42 -33.00 -0.34 -3.10 16 29 H 0.05 1.20 7.79 -51.93 -0.40 0.80 16 30 H 0.03 0.63 6.06 -51.93 -0.31 0.31 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 34 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.18 2.67 7.14 -52.49 -0.37 2.29 16 36 H 0.17 1.54 7.59 -52.49 -0.40 1.14 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -31.22 345.94 -7.74 -38.96 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.25 Total: 0.04 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.93 Total: -4.86 kcal Atomic # 7 Polarization: -23.93 SS G_CDS: 0.78 Total: -23.16 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -2.52 Total: -31.88 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.22 -7.74 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.933 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds