Wall clock time and date at job start Tue Mar 31 2020 19:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47514 * 2 1 4 4 H 1.09000 * 109.46969 * 54.99866 * 3 2 1 5 5 C 1.50699 * 109.47384 * 175.00057 * 3 2 1 6 6 H 1.08001 * 119.99554 * 120.00090 * 5 3 2 7 7 C 1.37871 * 120.00046 * 300.00095 * 5 3 2 8 8 N 1.31513 * 119.99936 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47168 * 89.99728 * 9 7 5 11 11 H 1.48497 * 109.47190 * 210.00173 * 9 7 5 12 12 H 1.48502 * 109.47012 * 329.99553 * 9 7 5 13 13 O 1.45202 * 109.46662 * 295.00047 * 3 2 1 14 14 C 1.34754 * 116.99763 * 90.00236 * 13 3 2 15 15 O 1.21513 * 119.99968 * 359.97438 * 14 13 3 16 16 C 1.47411 * 120.00014 * 180.27227 * 14 13 3 17 17 C 1.39830 * 120.14354 * 359.72194 * 16 14 13 18 18 C 1.37723 * 119.94301 * 179.97438 * 17 16 14 19 19 N 1.48016 * 119.83359 * 180.08651 * 18 17 16 20 20 O 1.21802 * 119.99815 * 0.02562 * 19 18 17 21 21 O 1.21799 * 120.00313 * 179.97438 * 19 18 17 22 22 C 1.38508 * 120.33996 * 0.06354 * 18 17 16 23 23 C 1.38592 * 120.42430 * 0.02562 * 22 18 17 24 24 C 1.38996 * 119.90545 * 359.61430 * 23 22 18 25 25 O 1.35801 * 120.86817 * 180.02562 * 24 23 22 26 26 C 1.43178 * 116.79598 * 343.16704 * 25 24 23 27 27 C 1.53467 * 108.22704 * 46.00453 * 26 25 24 28 28 O 1.36136 * 119.37183 * 179.76391 * 23 22 18 29 29 H 1.09000 * 109.46843 * 299.99787 * 1 2 3 30 30 H 1.09000 * 109.47031 * 59.99585 * 1 2 3 31 31 H 1.09004 * 109.47060 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47212 * 239.99817 * 2 1 3 33 33 H 1.09000 * 109.47031 * 120.00415 * 2 1 3 34 34 H 0.97006 * 119.99920 * 179.97438 * 8 7 5 35 35 H 1.07996 * 120.02649 * 359.95287 * 17 16 14 36 36 H 1.07996 * 119.79194 * 179.97438 * 22 18 17 37 37 H 1.09003 * 109.71040 * 286.32499 * 26 25 24 38 38 H 1.08994 * 109.74909 * 165.71346 * 26 25 24 39 39 H 1.09010 * 109.70572 * 180.63221 * 27 26 25 40 40 H 1.09004 * 109.70858 * 60.01749 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3365 2.1727 9 14 6.0051 0.8799 1.3810 10 1 6.4429 2.1128 2.0835 11 1 6.4391 -0.3112 2.1544 12 1 6.6131 0.8392 0.0268 13 8 1.6560 2.0916 -1.2407 14 6 0.4682 2.7279 -1.2560 15 8 -0.2276 2.7396 -0.2599 16 6 0.0101 3.4042 -2.4831 17 6 0.8082 3.3923 -3.6312 18 6 0.3758 4.0250 -4.7755 19 7 1.2218 4.0092 -5.9900 20 8 2.2970 3.4372 -5.9758 21 8 0.8422 4.5674 -7.0039 22 6 -0.8467 4.6757 -4.7959 23 6 -1.6487 4.6982 -3.6658 24 6 -1.2294 4.0578 -2.5056 25 8 -1.9998 4.0671 -1.3873 26 6 -3.0446 5.0444 -1.3314 27 6 -3.7846 5.0335 -2.6759 28 8 -2.8441 5.3482 -3.7083 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8294 -0.0620 2.9494 35 1 1.7629 2.8876 -3.6204 36 1 -1.1769 5.1693 -5.6979 37 1 -2.6160 6.0311 -1.1558 38 1 -3.7382 4.7966 -0.5280 39 1 -4.5802 5.7786 -2.6636 40 1 -4.2087 4.0452 -2.8540 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088517.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:35 Heat of formation + Delta-G solvation = -146.955311 kcal Electronic energy + Delta-G solvation = -29743.999212 eV Core-core repulsion = 25299.902598 eV Total energy + Delta-G solvation = -4444.096613 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.43731 -42.74262 -41.31840 -39.20283 -38.74182 -37.72758 -37.54582 -35.55017 -33.51127 -33.05291 -32.67515 -30.31939 -29.37167 -27.68777 -26.31081 -25.69405 -25.00479 -22.83617 -22.50291 -21.59195 -20.58440 -19.95858 -19.65160 -18.94864 -18.72994 -18.66558 -18.23095 -17.98323 -17.32665 -17.10061 -16.74061 -16.33054 -16.20781 -15.60127 -15.49687 -15.24875 -14.91132 -14.78081 -14.26290 -13.97278 -13.72148 -13.41801 -13.33746 -13.15043 -12.88914 -12.82864 -12.74908 -12.60124 -12.44921 -12.31835 -12.21788 -12.14908 -12.04002 -11.76996 -11.51698 -11.36369 -10.85190 -10.56481 -10.47015 -9.81782 -8.28663 -6.45011 -1.43017 -0.83851 0.01762 0.12621 1.21907 1.41480 1.43405 1.53342 1.56894 1.69645 1.85286 2.07747 2.37762 2.75664 3.01512 3.14023 3.32288 3.35989 3.44079 3.83790 3.89749 3.98051 4.14392 4.20618 4.35059 4.36829 4.39774 4.46213 4.52937 4.54097 4.61880 4.79988 5.05296 5.15187 5.18161 5.30481 5.46632 5.49713 5.64321 5.84766 5.90847 6.06633 6.44017 6.57331 6.85909 7.25696 8.78062 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011619 B = 0.003875 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.361730 B = 7223.856984 C = 9035.911483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.229 3.771 4 H 0.012 0.988 5 C -0.551 4.551 6 H 0.065 0.935 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.977 3.023 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.265 1.265 13 O -0.357 6.357 14 C 0.496 3.504 15 O -0.507 6.507 16 C -0.136 4.136 17 C 0.011 3.989 18 C -0.061 4.061 19 N 0.038 4.962 20 O -0.195 6.195 21 O -0.134 6.134 22 C -0.009 4.009 23 C 0.054 3.946 24 C 0.168 3.832 25 O -0.286 6.286 26 C -0.002 4.002 27 C 0.017 3.983 28 O -0.291 6.291 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.271 0.729 35 H 0.167 0.833 36 H 0.198 0.802 37 H 0.096 0.904 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.589 10.478 -11.141 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.176 3.824 4 H 0.030 0.970 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.801 3.199 10 H -0.198 1.198 11 H -0.199 1.199 12 H -0.189 1.189 13 O -0.274 6.274 14 C 0.340 3.660 15 O -0.397 6.397 16 C -0.139 4.139 17 C -0.009 4.009 18 C -0.145 4.145 19 N 0.556 4.444 20 O -0.401 6.401 21 O -0.358 6.358 22 C -0.029 4.029 23 C 0.007 3.993 24 C 0.118 3.882 25 O -0.197 6.197 26 C -0.076 4.076 27 C -0.057 4.057 28 O -0.206 6.206 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.185 0.815 36 H 0.215 0.785 37 H 0.114 0.886 38 H 0.176 0.824 39 H 0.192 0.808 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.184 10.337 -9.950 22.386 hybrid contribution 1.091 -0.256 0.480 1.219 sum -16.093 10.081 -9.470 21.220 Atomic orbital electron populations 1.21702 0.96231 1.00620 1.00029 1.21892 0.94492 0.98003 1.02509 1.20447 0.94581 0.89263 0.78093 0.96982 1.21319 0.90424 1.40137 1.06987 0.91633 1.25722 1.03982 0.93793 0.94334 1.69997 1.37355 1.37805 1.09838 0.85261 0.77969 0.78034 0.78667 1.19811 1.19948 1.18900 1.86521 1.34761 1.62981 1.43149 1.20793 0.80591 0.76967 0.87624 1.90824 1.55337 1.58181 1.35351 1.18329 0.94284 1.08022 0.93300 1.21037 0.99798 0.91891 0.88151 1.20312 0.95429 1.12261 0.86518 1.43436 1.00760 0.98152 1.02060 1.94634 1.09435 1.45209 1.90855 1.94486 1.76398 1.43329 1.21619 1.20369 0.89191 0.94381 0.98923 1.18024 0.90030 1.00177 0.91021 1.19232 0.89089 0.93067 0.86834 1.86660 1.43789 1.54760 1.34503 1.24409 0.89235 0.92495 1.01419 1.24195 0.90743 1.06608 0.84119 1.86395 1.21442 1.61170 1.51558 0.94221 0.94833 0.91992 0.93583 0.89260 0.91975 0.81517 0.78523 0.88618 0.82388 0.80752 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.58 8.56 71.98 0.62 -4.96 16 2 C -0.13 -6.55 5.49 30.59 0.17 -6.38 16 3 C 0.23 12.37 2.25 29.85 0.07 12.43 16 4 H 0.01 0.74 7.16 -2.39 -0.02 0.73 16 5 C -0.55 -31.17 8.90 25.60 0.23 -30.94 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -51.57 11.29 21.44 0.24 -51.33 16 9 Si 0.98 42.93 29.54 68.60 2.03 44.96 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 13 O -0.36 -17.14 9.05 -56.65 -0.51 -17.66 16 14 C 0.50 21.03 6.34 70.24 0.45 21.48 16 15 O -0.51 -23.36 12.28 26.87 0.33 -23.03 16 16 C -0.14 -4.44 5.89 -20.01 -0.12 -4.56 16 17 C 0.01 0.32 9.11 22.53 0.21 0.52 16 18 C -0.06 -1.55 6.84 36.32 0.25 -1.30 16 19 N 0.04 1.06 4.45 -46.60 -0.21 0.85 16 20 O -0.20 -6.28 18.43 18.88 0.35 -5.93 16 21 O -0.13 -3.50 18.43 18.89 0.35 -3.15 16 22 C -0.01 -0.18 9.46 22.42 0.21 0.03 16 23 C 0.05 1.08 6.49 22.54 0.15 1.23 16 24 C 0.17 4.43 6.51 22.91 0.15 4.58 16 25 O -0.29 -7.46 8.42 -64.31 -0.54 -8.00 16 26 C 0.00 -0.02 7.26 72.14 0.52 0.50 16 27 C 0.02 0.14 7.26 72.14 0.52 0.66 16 28 O -0.29 -4.23 10.42 -82.83 -0.86 -5.09 16 29 H 0.04 1.81 7.79 -2.39 -0.02 1.79 16 30 H 0.03 1.40 6.06 -2.39 -0.01 1.39 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.09 4.86 5.95 -2.39 -0.01 4.84 16 34 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 35 H 0.17 5.32 7.14 -2.91 -0.02 5.30 16 36 H 0.20 2.69 7.59 -2.91 -0.02 2.67 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.18 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -70.80 345.94 6.14 -64.66 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.10 Total: 8.78 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 3.86 Total: -5.06 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.03 Total: -50.48 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -0.89 Total: -62.86 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -70.80 6.14 -64.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088517.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.295 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds