Wall clock time and date at job start Tue Mar 31 2020 19:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47115 * 2 1 4 4 H 1.09001 * 109.47426 * 305.58387 * 3 2 1 5 5 C 1.50711 * 109.47008 * 185.58912 * 3 2 1 6 6 H 1.08002 * 119.99859 * 274.99383 * 5 3 2 7 7 C 1.37874 * 119.99768 * 94.99464 * 5 3 2 8 8 N 1.31516 * 119.99765 * 184.84062 * 7 5 3 9 9 Si 1.86791 * 120.00389 * 4.84203 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86566 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86662 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86539 * 9 7 5 13 13 O 1.45197 * 109.47078 * 65.59037 * 3 2 1 14 14 C 1.34756 * 116.99722 * 269.99784 * 13 3 2 15 15 O 1.21503 * 119.99764 * 359.97438 * 14 13 3 16 16 C 1.47409 * 119.99818 * 180.02562 * 14 13 3 17 17 C 1.39829 * 120.14863 * 0.02562 * 16 14 13 18 18 C 1.37719 * 119.94815 * 180.02562 * 17 16 14 19 19 N 1.48018 * 119.83208 * 180.08170 * 18 17 16 20 20 O 1.21798 * 120.00310 * 359.97438 * 19 18 17 21 21 O 1.21801 * 120.00227 * 180.02562 * 19 18 17 22 22 C 1.38504 * 120.33869 * 0.06104 * 18 17 16 23 23 C 1.38593 * 120.42247 * 359.97438 * 22 18 17 24 24 C 1.38992 * 119.90903 * 359.63547 * 23 22 18 25 25 O 1.35800 * 120.87145 * 180.02562 * 24 23 22 26 26 C 1.43179 * 116.79217 * 343.16433 * 25 24 23 27 27 C 1.53470 * 108.23051 * 46.01162 * 26 25 24 28 28 O 1.36143 * 119.36866 * 179.78545 * 23 22 18 29 29 H 1.08994 * 109.47107 * 59.99573 * 1 2 3 30 30 H 1.09001 * 109.46414 * 299.99613 * 1 2 3 31 31 H 1.08998 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47143 * 120.00447 * 2 1 3 33 33 H 1.09009 * 109.47187 * 240.00085 * 2 1 3 34 34 H 0.96999 * 120.00264 * 180.02562 * 8 7 5 35 35 H 1.08006 * 120.02526 * 0.02562 * 17 16 14 36 36 H 1.07994 * 119.79398 * 179.97438 * 22 18 17 37 37 H 1.08994 * 109.71269 * 286.32357 * 26 25 24 38 38 H 1.08999 * 109.74677 * 165.71309 * 26 25 24 39 39 H 1.09002 * 109.70867 * 180.63001 * 27 26 25 40 40 H 1.08998 * 109.70848 * 60.00532 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5407 1.4447 -0.1384 6 1 4.1639 1.3339 0.7367 7 6 4.1181 1.5882 -1.3822 8 7 5.4231 1.4950 -1.5161 9 14 3.0469 1.9151 -2.8771 10 1 2.7810 3.3720 -2.9866 11 1 3.7471 1.4466 -4.0999 12 1 1.7608 1.1867 -2.7333 13 8 1.6679 2.0873 1.2466 14 6 0.4804 2.7235 1.2755 15 8 -0.2246 2.7393 0.2861 16 6 0.0372 3.4012 2.5073 17 6 0.8468 3.3863 3.6472 18 6 0.4285 4.0204 4.7960 19 7 1.2884 4.0046 6.0007 20 8 2.3627 3.4314 5.9746 21 8 0.9212 4.5639 7.0184 22 6 -0.7926 4.6732 4.8297 23 6 -1.6071 4.6965 3.7086 24 6 -1.1950 4.0681 2.5394 25 8 -1.9773 4.0793 1.4293 26 6 -3.3552 4.4215 1.6142 27 6 -3.4252 5.6607 2.5168 28 8 -2.8051 5.3407 3.7669 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 5.8294 1.5963 -2.3910 35 1 1.7995 2.8780 3.6269 36 1 -1.1122 5.1672 5.7353 37 1 -3.8798 3.5917 2.0877 38 1 -3.8123 4.6429 0.6498 39 1 -4.4666 5.9362 2.6829 40 1 -2.8959 6.4890 2.0457 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787088518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:39 Heat of formation + Delta-G solvation = -147.644051 kcal Electronic energy + Delta-G solvation = -29857.581891 eV Core-core repulsion = 25413.455411 eV Total energy + Delta-G solvation = -4444.126479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.44385 -42.75071 -41.38664 -39.21809 -38.75491 -37.73471 -37.58853 -35.40251 -34.02698 -33.08999 -32.71299 -30.32115 -29.83572 -27.70079 -26.30321 -25.69670 -24.79415 -22.89052 -22.51007 -21.57498 -20.67437 -19.96152 -19.65779 -19.35274 -18.75628 -18.69465 -18.25173 -18.06388 -17.43714 -17.25582 -16.68147 -16.27343 -16.21137 -15.63358 -15.51732 -15.27284 -14.95686 -14.85119 -14.41563 -14.04392 -13.95337 -13.73241 -13.57406 -13.17531 -12.95476 -12.89059 -12.75892 -12.63354 -12.45794 -12.32725 -12.21998 -12.08858 -11.95766 -11.89151 -11.51865 -11.33988 -11.07957 -10.82811 -10.49557 -9.82326 -8.47983 -6.58216 -1.44044 -0.85296 0.00868 0.12274 1.18828 1.23899 1.27599 1.38109 1.53499 1.63182 1.84291 2.05444 2.18398 2.71058 2.88741 3.12990 3.32001 3.35670 3.42833 3.83564 3.85454 3.97082 4.12159 4.14069 4.18497 4.22761 4.34299 4.42028 4.45855 4.53131 4.55367 4.61482 4.98091 5.04861 5.06457 5.14214 5.31828 5.43246 5.45379 5.56167 5.84388 6.11631 6.42549 6.51328 6.77744 7.09171 8.67381 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.004211 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.248092 B = 6648.291463 C = 8312.546753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.131 4.131 3 C 0.194 3.806 4 H 0.041 0.959 5 C -0.534 4.534 6 H 0.047 0.953 7 C 0.037 3.963 8 N -0.922 5.922 9 Si 0.926 3.074 10 H -0.270 1.270 11 H -0.267 1.267 12 H -0.245 1.245 13 O -0.354 6.354 14 C 0.497 3.503 15 O -0.505 6.505 16 C -0.138 4.138 17 C 0.010 3.990 18 C -0.062 4.062 19 N 0.037 4.963 20 O -0.199 6.199 21 O -0.132 6.132 22 C -0.009 4.009 23 C 0.054 3.946 24 C 0.170 3.830 25 O -0.284 6.284 26 C -0.001 4.001 27 C 0.016 3.984 28 O -0.291 6.291 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.276 0.724 35 H 0.165 0.835 36 H 0.197 0.803 37 H 0.098 0.902 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.524 8.590 8.816 26.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.141 3.859 4 H 0.059 0.941 5 C -0.571 4.571 6 H 0.066 0.934 7 C -0.164 4.164 8 N -0.559 5.559 9 Si 0.749 3.251 10 H -0.195 1.195 11 H -0.192 1.192 12 H -0.169 1.169 13 O -0.271 6.271 14 C 0.342 3.658 15 O -0.396 6.396 16 C -0.141 4.141 17 C -0.010 4.010 18 C -0.146 4.146 19 N 0.555 4.445 20 O -0.404 6.404 21 O -0.357 6.357 22 C -0.029 4.029 23 C 0.007 3.993 24 C 0.120 3.880 25 O -0.195 6.195 26 C -0.074 4.074 27 C -0.058 4.058 28 O -0.206 6.206 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.183 0.817 36 H 0.214 0.786 37 H 0.117 0.883 38 H 0.177 0.823 39 H 0.192 0.808 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -23.963 8.536 7.680 26.572 hybrid contribution 0.580 0.035 -0.701 0.911 sum -23.384 8.571 6.978 25.864 Atomic orbital electron populations 1.21808 0.95099 1.01753 1.00953 1.22038 0.95645 0.96663 1.02581 1.20908 0.93963 0.90501 0.80552 0.94111 1.20942 0.89615 1.51704 0.94818 0.93446 1.25652 0.96090 0.93237 1.01461 1.69964 1.11308 1.48815 1.25860 0.86051 0.80142 0.79770 0.79165 1.19509 1.19199 1.16877 1.86677 1.34686 1.63033 1.42720 1.20803 0.80530 0.76895 0.87608 1.90804 1.54711 1.58433 1.35623 1.18331 0.96185 1.06235 0.93313 1.21052 0.99648 0.91999 0.88285 1.20322 0.95134 1.12470 0.86644 1.43466 1.00840 0.98149 1.02037 1.94645 1.09733 1.45300 1.90737 1.94482 1.77072 1.43170 1.20979 1.20368 0.87978 0.94460 1.00063 1.18021 0.90121 0.98970 0.92155 1.19197 0.90323 0.90999 0.87490 1.86650 1.22892 1.82488 1.27504 1.24411 0.78200 0.98925 1.05901 1.24204 1.02916 0.96560 0.82156 1.86403 1.28834 1.72161 1.33179 0.93411 0.94260 0.90856 0.91614 0.91062 0.91427 0.81714 0.78595 0.88337 0.82315 0.80773 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.57 71.98 0.62 -4.39 16 2 C -0.13 -5.59 5.63 30.59 0.17 -5.42 16 3 C 0.19 9.55 1.91 29.85 0.06 9.60 16 4 H 0.04 2.07 4.31 -2.39 -0.01 2.06 16 5 C -0.53 -30.78 9.25 25.60 0.24 -30.54 16 6 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 7 C 0.04 2.11 5.47 84.65 0.46 2.57 16 8 N -0.92 -55.74 13.96 21.45 0.30 -55.44 16 9 Si 0.93 43.38 26.99 68.60 1.85 45.23 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.25 -10.85 6.82 99.48 0.68 -10.18 16 13 O -0.35 -16.22 9.06 -56.66 -0.51 -16.73 16 14 C 0.50 19.75 6.36 70.24 0.45 20.20 16 15 O -0.51 -21.17 12.29 26.91 0.33 -20.83 16 16 C -0.14 -4.30 5.89 -20.01 -0.12 -4.42 16 17 C 0.01 0.29 9.11 22.53 0.21 0.49 16 18 C -0.06 -1.56 6.84 36.32 0.25 -1.31 16 19 N 0.04 1.06 4.45 -46.60 -0.21 0.85 16 20 O -0.20 -6.59 18.43 18.89 0.35 -6.24 16 21 O -0.13 -3.49 18.43 18.88 0.35 -3.15 16 22 C -0.01 -0.18 9.46 22.42 0.21 0.04 16 23 C 0.05 1.03 6.49 22.54 0.15 1.18 16 24 C 0.17 4.24 6.51 22.91 0.15 4.39 16 25 O -0.28 -6.80 8.42 -64.31 -0.54 -7.35 16 26 C 0.00 -0.01 7.26 72.14 0.52 0.52 16 27 C 0.02 0.11 7.26 72.14 0.52 0.64 16 28 O -0.29 -3.99 10.42 -82.91 -0.86 -4.85 16 29 H 0.05 1.78 7.82 -2.39 -0.02 1.76 16 30 H 0.04 1.41 6.05 -2.39 -0.01 1.40 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 34 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 35 H 0.17 5.32 7.14 -2.91 -0.02 5.30 16 36 H 0.20 2.65 7.59 -2.91 -0.02 2.63 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.16 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.17 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.32 345.75 6.01 -67.31 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.08 Total: 7.66 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 3.88 Total: -6.45 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.09 Total: -54.59 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.89 Total: -59.16 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.85 Total: 45.23 kcal Total: -73.32 6.01 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787088518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.338 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds