Wall clock time and date at job start Tue Mar 31 2020 20:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47231 * 2 1 4 4 C 1.34703 * 117.00015 * 179.97438 * 3 2 1 5 5 O 1.21471 * 120.00493 * 0.02562 * 4 3 2 6 6 C 1.47743 * 119.99630 * 179.97438 * 4 3 2 7 7 C 1.39378 * 120.07216 * 179.72806 * 6 4 3 8 8 C 1.39337 * 119.69181 * 180.25520 * 7 6 4 9 9 C 1.47749 * 120.07160 * 180.02562 * 8 7 6 10 10 O 1.21463 * 120.00140 * 359.97438 * 9 8 7 11 11 O 1.34707 * 119.99680 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99712 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46836 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47022 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00096 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99910 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00166 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47426 * 89.99716 * 18 16 14 20 20 H 1.48502 * 109.47279 * 210.00258 * 18 16 14 21 21 H 1.48500 * 109.46977 * 330.00043 * 18 16 14 22 22 C 1.39763 * 119.85391 * 0.04148 * 8 7 6 23 23 C 1.38054 * 120.14356 * 359.95827 * 22 8 7 24 24 N 1.48018 * 119.83958 * 179.97438 * 23 22 8 25 25 O 1.21811 * 119.99739 * 180.02562 * 24 23 22 26 26 O 1.21794 * 120.00444 * 0.02562 * 24 23 22 27 27 C 1.38085 * 120.31242 * 0.02562 * 23 22 8 28 28 H 1.08996 * 109.47497 * 299.99804 * 1 2 3 29 29 H 1.09001 * 109.47334 * 60.00229 * 1 2 3 30 30 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47497 * 240.00195 * 2 1 3 32 32 H 1.09001 * 109.47334 * 119.99771 * 2 1 3 33 33 H 1.07995 * 120.15447 * 0.27016 * 7 6 4 34 34 H 1.09000 * 109.46792 * 299.98817 * 12 11 9 35 35 H 1.08997 * 109.47521 * 59.99643 * 12 11 9 36 36 H 1.08997 * 109.47274 * 299.99938 * 13 12 11 37 37 H 1.08996 * 109.47382 * 60.00092 * 13 12 11 38 38 H 0.97002 * 119.99397 * 179.97438 * 17 16 14 39 39 H 1.07992 * 119.92725 * 179.97438 * 22 8 7 40 40 H 1.07999 * 119.92978 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9141 2.9108 0.0000 7 6 5.2956 3.0952 0.0063 8 6 5.8195 4.3863 0.0111 9 6 7.2827 4.5915 0.0172 10 8 8.0302 3.6342 0.0185 11 8 7.7875 5.8404 0.0224 12 6 9.2340 5.9665 0.0276 13 6 9.6167 7.4479 0.0324 14 6 11.1180 7.5789 0.0385 15 1 11.7373 6.6941 0.0385 16 6 11.7010 8.8283 0.0441 17 7 13.0112 8.9426 0.0499 18 14 10.6300 10.3588 0.0434 19 1 10.3402 10.7609 1.4433 20 1 11.3425 11.4613 -0.6510 21 1 9.3558 10.0709 -0.6628 22 6 4.9579 5.4868 0.0105 23 6 3.5905 5.2967 0.0043 24 7 2.6842 6.4670 0.0043 25 8 1.4773 6.3025 -0.0008 26 8 3.1452 7.5943 0.0093 27 6 3.0644 4.0200 -0.0009 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9569 2.2414 0.0071 34 1 9.6376 5.4839 0.9178 35 1 9.6437 5.4887 -0.8622 36 1 9.2132 7.9303 -0.8578 37 1 9.2071 7.9262 0.9221 38 1 13.4213 9.8217 0.0534 39 1 5.3627 6.4879 0.0147 40 1 1.9937 3.8784 -0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794545570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:04 Heat of formation + Delta-G solvation = -149.848491 kcal Electronic energy + Delta-G solvation = -27701.639869 eV Core-core repulsion = 23257.417799 eV Total energy + Delta-G solvation = -4444.222071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.60503 -41.36387 -40.57275 -39.21508 -37.23275 -36.91998 -36.55769 -33.51430 -33.06508 -32.77516 -31.96525 -30.80219 -27.09776 -26.05261 -25.76533 -24.41930 -23.25785 -22.04544 -21.25544 -20.78533 -19.51043 -19.13592 -18.26864 -17.91057 -17.77270 -17.34396 -17.20171 -16.86066 -16.64545 -16.39454 -16.23338 -15.61336 -14.87230 -14.29316 -14.24223 -14.03769 -13.52244 -13.36757 -13.36648 -13.04646 -12.96412 -12.56147 -12.55581 -12.20849 -11.90535 -11.72917 -11.68974 -11.45044 -11.42599 -11.27535 -11.14609 -10.96859 -10.81507 -10.42733 -10.26150 -10.21475 -10.03191 -9.85580 -9.43964 -8.68515 -6.19065 -4.21516 -0.73869 -0.47045 0.57891 0.85251 1.54875 1.78469 2.22031 2.52208 2.86556 3.24677 3.32803 3.36097 3.53175 3.71902 3.92739 4.03195 4.19107 4.26674 4.33343 4.36667 4.39162 4.68161 4.70828 4.85404 5.02687 5.13215 5.14298 5.21626 5.26248 5.36129 5.41254 5.72987 5.74912 5.79846 5.92878 6.28215 6.43387 7.00106 7.00845 7.09653 7.24582 7.51776 7.68152 8.31542 8.81517 9.39770 10.93154 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.002444 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.702047 B =11455.405060 C =13191.037853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 O -0.351 6.351 4 C 0.518 3.482 5 O -0.487 6.487 6 C -0.132 4.132 7 C 0.050 3.950 8 C -0.117 4.117 9 C 0.506 3.494 10 O -0.492 6.492 11 O -0.352 6.352 12 C 0.083 3.917 13 C -0.010 4.010 14 C -0.531 4.531 15 H 0.076 0.924 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.881 3.119 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.262 1.262 22 C 0.032 3.968 23 C -0.065 4.065 24 N 0.028 4.972 25 O -0.152 6.152 26 O -0.140 6.140 27 C 0.025 3.975 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.026 0.974 38 H 0.267 0.733 39 H 0.181 0.819 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.256 -15.303 -0.146 31.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.268 6.268 4 C 0.361 3.639 5 O -0.375 6.375 6 C -0.134 4.134 7 C 0.032 3.968 8 C -0.119 4.119 9 C 0.348 3.652 10 O -0.381 6.381 11 O -0.268 6.268 12 C 0.011 3.989 13 C -0.047 4.047 14 C -0.569 4.569 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.532 5.532 18 Si 0.707 3.293 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.187 1.187 22 C 0.013 3.987 23 C -0.148 4.148 24 N 0.550 4.450 25 O -0.368 6.368 26 O -0.359 6.359 27 C 0.006 3.994 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.192 0.808 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.198 0.802 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -26.199 -16.329 -0.147 30.871 hybrid contribution -0.438 0.948 0.021 1.044 sum -26.637 -15.381 -0.125 30.759 Atomic orbital electron populations 1.21839 0.92037 1.03380 1.03892 1.23178 0.95698 0.78907 1.03193 1.86518 1.22778 1.33579 1.83960 1.20500 0.81272 0.88660 0.73488 1.90921 1.60336 1.41581 1.44669 1.18813 0.92862 0.90647 1.11076 1.21846 0.93787 0.97855 0.83344 1.19105 0.91874 0.92516 1.08436 1.20439 0.87653 0.82880 0.74192 1.90887 1.60004 1.42255 1.44929 1.86526 1.29928 1.27856 1.82482 1.23586 0.71271 1.01658 1.02341 1.19660 0.97870 0.89043 0.98160 1.20789 0.88473 0.94689 1.52904 0.90598 1.24936 0.94953 0.99067 0.93992 1.69894 1.09262 1.24367 1.49695 0.86758 0.81079 0.82573 0.78855 1.19975 1.21100 1.18655 1.21744 0.89785 1.02696 0.84513 1.20874 0.90476 0.86561 1.16905 1.43403 1.01472 1.02132 0.97961 1.94562 0.96587 1.92437 1.53201 1.94631 1.80428 1.08229 1.52572 1.21511 1.03100 0.88647 0.86153 0.91191 0.91184 0.89831 0.90670 0.90671 0.80847 0.91131 0.91110 0.95160 0.95591 0.92335 0.80152 0.80763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 10.29 37.16 0.38 -0.11 16 2 C 0.06 0.34 6.19 37.16 0.23 0.57 16 3 O -0.35 -2.55 9.46 -40.50 -0.38 -2.93 16 4 C 0.52 4.57 7.90 34.62 0.27 4.84 16 5 O -0.49 -5.50 16.13 -19.24 -0.31 -5.81 16 6 C -0.13 -1.09 5.87 -105.03 -0.62 -1.71 16 7 C 0.05 0.47 9.14 -38.75 -0.35 0.12 16 8 C -0.12 -1.27 5.87 -105.03 -0.62 -1.89 16 9 C 0.51 7.41 7.90 34.62 0.27 7.69 16 10 O -0.49 -8.37 16.13 -19.24 -0.31 -8.68 16 11 O -0.35 -5.83 9.46 -40.51 -0.38 -6.21 16 12 C 0.08 1.63 5.41 37.16 0.20 1.83 16 13 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 14 C -0.53 -14.53 9.66 -34.44 -0.33 -14.86 16 15 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -26.71 13.96 55.43 0.77 -25.93 16 18 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.26 -5.94 6.54 56.52 0.37 -5.57 16 22 C 0.03 0.32 9.12 -39.08 -0.36 -0.04 16 23 C -0.07 -0.61 6.84 -80.07 -0.55 -1.16 16 24 N 0.03 0.31 4.45 33.90 0.15 0.47 16 25 O -0.15 -1.73 18.43 -29.46 -0.54 -2.27 16 26 O -0.14 -1.79 18.43 -29.46 -0.54 -2.33 16 27 C 0.03 0.19 9.12 -39.08 -0.36 -0.17 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.17 1.69 7.23 -52.49 -0.38 1.31 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 37 H 0.03 0.58 7.57 -51.93 -0.39 0.18 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.18 1.81 7.13 -52.49 -0.37 1.43 16 40 H 0.17 1.03 7.13 -52.49 -0.37 0.66 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -31.98 367.41 -7.16 -39.14 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -4.44 Total: -3.90 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.04 Total: -3.28 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.92 Total: -25.47 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -2.47 Total: -28.23 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.98 -7.16 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794545570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.709 kcal (2) G-P(sol) polarization free energy of solvation -31.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds