Wall clock time and date at job start Tue Mar 31 2020 20:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45206 * 109.47231 * 2 1 4 4 C 1.34703 * 117.00015 * 179.97438 * 3 2 1 5 5 O 1.21471 * 120.00493 * 0.02562 * 4 3 2 6 6 C 1.47743 * 119.99630 * 179.97438 * 4 3 2 7 7 C 1.39378 * 120.07216 * 179.72806 * 6 4 3 8 8 C 1.39337 * 119.69181 * 180.25520 * 7 6 4 9 9 C 1.47749 * 120.07160 * 180.02562 * 8 7 6 10 10 O 1.21463 * 120.00140 * 359.97438 * 9 8 7 11 11 O 1.34707 * 119.99680 * 180.02562 * 9 8 7 12 12 C 1.45201 * 116.99712 * 180.02562 * 11 9 8 13 13 C 1.53005 * 109.46836 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47022 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00096 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99910 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00166 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47426 * 89.99716 * 18 16 14 20 20 H 1.48502 * 109.47279 * 210.00258 * 18 16 14 21 21 H 1.48500 * 109.46977 * 330.00043 * 18 16 14 22 22 C 1.39763 * 119.85391 * 0.04148 * 8 7 6 23 23 C 1.38054 * 120.14356 * 359.95827 * 22 8 7 24 24 N 1.48018 * 119.83958 * 179.97438 * 23 22 8 25 25 O 1.21811 * 119.99739 * 180.02562 * 24 23 22 26 26 O 1.21794 * 120.00444 * 0.02562 * 24 23 22 27 27 C 1.38085 * 120.31242 * 0.02562 * 23 22 8 28 28 H 1.08996 * 109.47497 * 299.99804 * 1 2 3 29 29 H 1.09001 * 109.47334 * 60.00229 * 1 2 3 30 30 H 1.09006 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47497 * 240.00195 * 2 1 3 32 32 H 1.09001 * 109.47334 * 119.99771 * 2 1 3 33 33 H 1.07995 * 120.15447 * 0.27016 * 7 6 4 34 34 H 1.09000 * 109.46792 * 299.98817 * 12 11 9 35 35 H 1.08997 * 109.47521 * 59.99643 * 12 11 9 36 36 H 1.08997 * 109.47274 * 299.99938 * 13 12 11 37 37 H 1.08996 * 109.47382 * 60.00092 * 13 12 11 38 38 H 0.97002 * 119.99397 * 179.97438 * 17 16 14 39 39 H 1.07992 * 119.92725 * 179.97438 * 22 8 7 40 40 H 1.07999 * 119.92978 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3494 1.5455 0.0005 5 8 4.0894 0.5822 0.0005 6 6 3.9141 2.9108 0.0000 7 6 5.2956 3.0952 0.0063 8 6 5.8195 4.3863 0.0111 9 6 7.2827 4.5915 0.0172 10 8 8.0302 3.6342 0.0185 11 8 7.7875 5.8404 0.0224 12 6 9.2340 5.9665 0.0276 13 6 9.6167 7.4479 0.0324 14 6 11.1180 7.5789 0.0385 15 1 11.7373 6.6941 0.0385 16 6 11.7010 8.8283 0.0441 17 7 13.0112 8.9426 0.0499 18 14 10.6300 10.3588 0.0434 19 1 10.3402 10.7609 1.4433 20 1 11.3425 11.4613 -0.6510 21 1 9.3558 10.0709 -0.6628 22 6 4.9579 5.4868 0.0105 23 6 3.5905 5.2967 0.0043 24 7 2.6842 6.4670 0.0043 25 8 1.4773 6.3025 -0.0008 26 8 3.1452 7.5943 0.0093 27 6 3.0644 4.0200 -0.0009 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9569 2.2414 0.0071 34 1 9.6376 5.4839 0.9178 35 1 9.6437 5.4887 -0.8622 36 1 9.2132 7.9303 -0.8578 37 1 9.2071 7.9262 0.9221 38 1 13.4213 9.8217 0.0534 39 1 5.3627 6.4879 0.0147 40 1 1.9937 3.8784 -0.0062 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794545570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:03 Heat of formation + Delta-G solvation = -166.395652 kcal Electronic energy + Delta-G solvation = -27702.357408 eV Core-core repulsion = 23257.417799 eV Total energy + Delta-G solvation = -4444.939610 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.45576 -42.18539 -41.60830 -40.12538 -37.92019 -37.88958 -37.79850 -35.43268 -33.91201 -33.63409 -32.76137 -32.31096 -27.96882 -27.61232 -26.45776 -25.64929 -23.78396 -22.93617 -22.65870 -22.06098 -20.44452 -19.99178 -19.32269 -18.91574 -18.75425 -18.49554 -18.04828 -17.82115 -17.71608 -17.48693 -17.37757 -16.52327 -16.26970 -15.54433 -15.24211 -15.09368 -14.78928 -14.43275 -14.33961 -13.86326 -13.76595 -13.62383 -13.38407 -13.21134 -13.01438 -12.80279 -12.65651 -12.55442 -12.53720 -12.46526 -12.35816 -12.03674 -11.84914 -11.80928 -11.60244 -11.55975 -11.50229 -11.21511 -10.99045 -10.81015 -8.34386 -6.42637 -1.56147 -1.24515 -0.29828 0.02608 0.71192 1.06858 1.29267 1.39598 1.40821 1.43057 1.53154 1.98832 2.34363 2.76428 2.89730 3.00951 3.17662 3.23253 3.39688 3.48951 3.74728 4.02087 4.03859 4.07783 4.14220 4.15215 4.34649 4.36817 4.41814 4.55155 4.60537 4.79006 4.94482 4.95306 5.06324 5.07135 5.27996 5.33880 5.34379 5.50734 6.14630 6.32873 6.35290 6.37618 6.64097 7.22582 8.81342 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.002444 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.702047 B =11455.405060 C =13191.037853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.347 6.347 4 C 0.524 3.476 5 O -0.515 6.515 6 C -0.125 4.125 7 C 0.061 3.939 8 C -0.123 4.123 9 C 0.510 3.490 10 O -0.519 6.519 11 O -0.350 6.350 12 C 0.094 3.906 13 C -0.006 4.006 14 C -0.542 4.542 15 H 0.037 0.963 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.951 3.049 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.241 1.241 22 C 0.042 3.958 23 C -0.066 4.066 24 N 0.030 4.970 25 O -0.134 6.134 26 O -0.180 6.180 27 C 0.054 3.946 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.171 0.829 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.038 0.962 37 H 0.037 0.963 38 H 0.270 0.730 39 H 0.180 0.820 40 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.910 -15.391 -0.153 34.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.263 6.263 4 C 0.368 3.632 5 O -0.405 6.405 6 C -0.127 4.127 7 C 0.043 3.957 8 C -0.125 4.125 9 C 0.354 3.646 10 O -0.409 6.409 11 O -0.266 6.266 12 C 0.022 3.978 13 C -0.044 4.044 14 C -0.579 4.579 15 H 0.056 0.944 16 C -0.186 4.186 17 N -0.583 5.583 18 Si 0.773 3.227 19 H -0.189 1.189 20 H -0.209 1.209 21 H -0.165 1.165 22 C 0.023 3.977 23 C -0.149 4.149 24 N 0.550 4.450 25 O -0.357 6.357 26 O -0.390 6.390 27 C 0.035 3.965 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.188 0.812 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.198 0.802 40 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -29.838 -16.373 -0.153 34.035 hybrid contribution 0.592 0.758 0.024 0.962 sum -29.246 -15.615 -0.129 33.154 Atomic orbital electron populations 1.21861 0.90194 1.04556 1.04029 1.23453 0.97092 0.77926 1.03318 1.86520 1.21577 1.34866 1.83359 1.20471 0.81677 0.88267 0.72751 1.90922 1.61076 1.42400 1.46118 1.18674 0.92177 0.90824 1.10994 1.21801 0.94473 0.97083 0.82373 1.18642 0.89376 0.93344 1.11090 1.20940 0.89053 0.81679 0.72919 1.90881 1.61055 1.42699 1.46282 1.86488 1.27846 1.29243 1.82988 1.23115 0.73188 0.99601 1.01943 1.19499 0.94738 0.91309 0.98807 1.21098 0.90913 0.93581 1.52347 0.94434 1.25932 0.96289 1.02873 0.93514 1.70043 1.11463 1.25433 1.51366 0.85653 0.79722 0.77774 0.79545 1.18879 1.20869 1.16456 1.21657 0.90058 1.02327 0.83686 1.20761 0.89881 0.86413 1.17850 1.43551 1.01569 1.02325 0.97533 1.94542 0.96900 1.92441 1.51825 1.94650 1.80531 1.09015 1.54771 1.21703 1.04135 0.87379 0.83306 0.91023 0.91011 0.88172 0.90615 0.90621 0.81204 0.91635 0.91646 0.94366 0.94488 0.92107 0.80238 0.78324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 10.29 71.98 0.74 0.17 16 2 C 0.05 0.47 6.19 71.98 0.45 0.92 16 3 O -0.35 -4.10 9.46 -56.13 -0.53 -4.64 16 4 C 0.52 8.12 7.90 70.34 0.56 8.68 16 5 O -0.52 -10.97 16.13 19.93 0.32 -10.64 16 6 C -0.12 -1.75 5.87 -20.13 -0.12 -1.87 16 7 C 0.06 1.06 9.14 22.81 0.21 1.27 16 8 C -0.12 -2.49 5.87 -20.13 -0.12 -2.61 16 9 C 0.51 14.66 7.90 70.34 0.56 15.21 16 10 O -0.52 -17.71 16.13 19.96 0.32 -17.39 16 11 O -0.35 -11.33 9.46 -56.17 -0.53 -11.86 16 12 C 0.09 3.70 5.41 71.98 0.39 4.09 16 13 C -0.01 -0.27 4.42 29.85 0.13 -0.14 16 14 C -0.54 -30.29 9.66 25.60 0.25 -30.05 16 15 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 16 C 0.01 0.69 5.47 84.65 0.46 1.15 16 17 N -0.94 -57.78 13.96 21.45 0.30 -57.48 16 18 Si 0.95 42.52 27.47 68.60 1.88 44.41 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.24 -9.91 6.54 99.48 0.65 -9.26 16 22 C 0.04 0.76 9.12 22.59 0.21 0.96 16 23 C -0.07 -1.07 6.84 36.30 0.25 -0.82 16 24 N 0.03 0.61 4.45 -46.65 -0.21 0.40 16 25 O -0.13 -2.66 18.43 18.87 0.35 -2.31 16 26 O -0.18 -4.39 18.43 18.89 0.35 -4.04 16 27 C 0.05 0.64 9.12 22.59 0.21 0.84 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.17 3.18 7.23 -2.91 -0.02 3.16 16 34 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 37 H 0.04 1.58 7.57 -2.39 -0.02 1.57 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.18 3.34 7.13 -2.91 -0.02 3.32 16 40 H 0.20 1.47 7.13 -2.91 -0.02 1.45 16 Total: -1.00 -69.84 367.41 7.45 -62.39 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.04 Total: 3.35 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 4.16 Total: -2.19 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.09 Total: -57.07 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: 0.28 Total: -50.87 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.88 Total: 44.41 kcal Total: -69.84 7.45 -62.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794545570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.006 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds