Wall clock time and date at job start Tue Mar 31 2020 19:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38487 * 120.38393 * 2 1 4 4 C 1.39318 * 118.36905 * 180.23879 * 3 2 1 5 5 N 1.39803 * 120.47615 * 179.75647 * 4 3 2 6 6 C 1.34778 * 120.00103 * 324.82939 * 5 4 3 7 7 O 1.21379 * 119.99817 * 4.75367 * 6 5 4 8 8 C 1.49343 * 119.99957 * 184.76015 * 6 5 4 9 9 O 1.21370 * 120.00063 * 5.04671 * 8 6 5 10 10 N 1.34767 * 120.00143 * 185.04735 * 8 6 5 11 11 C 1.46508 * 120.00293 * 184.57483 * 10 8 6 12 12 C 1.52995 * 109.47284 * 184.52512 * 11 10 8 13 13 C 1.50708 * 115.54836 * 304.57019 * 12 11 10 14 14 H 1.07993 * 119.99871 * 119.55595 * 13 12 11 15 15 C 1.37878 * 119.99992 * 299.28515 * 13 12 11 16 16 N 1.31507 * 120.00230 * 173.02175 * 15 13 12 17 17 Si 1.86802 * 119.99916 * 353.01662 * 15 13 12 18 18 H 1.48502 * 109.47296 * 94.11663 * 17 15 13 19 19 H 1.48500 * 109.46965 * 214.11574 * 17 15 13 20 20 H 1.48504 * 109.47352 * 334.11470 * 17 15 13 21 21 C 1.52998 * 117.50433 * 90.24199 * 12 11 10 22 22 C 1.53001 * 117.50224 * 158.90511 * 12 11 10 23 23 C 1.38897 * 119.04449 * 359.49122 * 4 3 2 24 24 N 1.31811 * 120.66931 * 0.25133 * 23 4 3 25 25 C 1.31972 * 121.78323 * 0.02562 * 24 23 4 26 26 Cl 1.73607 * 119.54559 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46962 * 270.27139 * 1 2 3 28 28 H 1.08997 * 109.47070 * 30.27929 * 1 2 3 29 29 H 1.09000 * 109.47131 * 150.27491 * 1 2 3 30 30 H 1.08001 * 120.81116 * 0.02562 * 3 2 1 31 31 H 0.96997 * 119.99280 * 144.81816 * 5 4 3 32 32 H 0.97003 * 120.00487 * 4.57343 * 10 8 6 33 33 H 1.08995 * 109.47035 * 64.52094 * 11 10 8 34 34 H 1.09007 * 109.46715 * 304.52242 * 11 10 8 35 35 H 0.96998 * 120.00534 * 179.97438 * 16 15 13 36 36 H 1.08996 * 117.49973 * 215.00284 * 21 12 11 37 37 H 1.09001 * 117.49462 * 0.02562 * 21 12 11 38 38 H 1.09008 * 117.49369 * 359.97301 * 22 12 11 39 39 H 1.08999 * 117.50349 * 144.96706 * 22 12 11 40 40 H 1.08004 * 119.66515 * 180.26732 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1947 0.0000 4 6 3.5998 1.1457 -0.0051 5 7 4.3508 2.3249 -0.0104 6 6 3.9055 3.4044 -0.6834 7 8 2.8133 3.3817 -1.2125 8 6 4.7559 4.6284 -0.7782 9 8 5.8834 4.6202 -0.3291 10 7 4.2714 5.7420 -1.3625 11 6 5.1375 6.9093 -1.5457 12 6 4.3194 8.0658 -2.1237 13 6 3.5875 7.7666 -3.4066 14 1 2.5111 7.8447 -3.4450 15 6 4.2926 7.3986 -4.5329 16 7 3.6507 7.0053 -5.6112 17 14 6.1596 7.4590 -4.5272 18 1 6.6970 6.1232 -4.1639 19 1 6.6467 7.8379 -5.8779 20 1 6.6194 8.4640 -3.5353 21 6 3.6490 9.0208 -1.1341 22 6 4.8680 9.4818 -1.9371 23 6 4.2311 -0.0915 0.0008 24 7 3.5267 -1.2057 0.0061 25 6 2.2071 -1.1938 0.0056 26 17 1.3374 -2.6963 0.0134 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6871 2.1410 0.0004 31 1 5.1922 2.3661 0.4704 32 1 3.3492 5.7707 -1.6619 33 1 5.9461 6.6577 -2.2318 34 1 5.5562 7.2056 -0.5838 35 1 4.1467 6.7467 -6.4037 36 1 2.6786 9.4328 -1.4110 37 1 3.7912 8.8255 -0.0712 38 1 5.8116 9.5895 -1.4021 39 1 4.6999 10.1969 -2.7424 40 1 5.3100 -0.1412 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797539035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:16 Heat of formation + Delta-G solvation = -10.351656 kcal Electronic energy + Delta-G solvation = -25975.207646 eV Core-core repulsion = 22010.036528 eV Total energy + Delta-G solvation = -3965.171118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37619 -40.12270 -38.58178 -37.15442 -36.93866 -35.54112 -34.06162 -33.62354 -32.29520 -30.62471 -27.72880 -27.59441 -25.75290 -24.71093 -23.51946 -22.03447 -21.64745 -20.31734 -19.61675 -18.57660 -17.62734 -17.45867 -17.07461 -16.42085 -16.25236 -15.80707 -15.24980 -14.98829 -14.91571 -14.28133 -14.07984 -13.97478 -13.60636 -13.34667 -13.16324 -13.09640 -13.02458 -12.51506 -12.42363 -12.32753 -12.14971 -11.61074 -11.38576 -11.16043 -11.00377 -10.83083 -10.67817 -10.39274 -10.13957 -9.79509 -9.66253 -9.44668 -9.30288 -9.01928 -8.62546 -8.60229 -8.55872 -6.26949 -4.30200 0.43970 0.82561 1.48388 1.54449 2.24930 3.14638 3.17977 3.29996 3.33303 3.36170 3.61637 4.12078 4.28059 4.40336 4.44727 4.50674 4.62007 4.84344 5.00893 5.09507 5.17161 5.31235 5.48428 5.51015 5.65564 5.75280 5.78749 5.85626 5.99407 6.00758 6.24602 6.25881 6.37289 6.53663 6.62889 6.72689 6.85315 7.01011 7.33808 7.45569 7.55323 7.80771 8.21231 8.32819 8.75995 9.35434 10.83770 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002550 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.660279 B =10976.769846 C =11128.483980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.070 4.070 4 C 0.107 3.893 5 N -0.646 5.646 6 C 0.511 3.489 7 O -0.488 6.488 8 C 0.500 3.500 9 O -0.537 6.537 10 N -0.657 5.657 11 C 0.149 3.851 12 C -0.020 4.020 13 C -0.496 4.496 14 H 0.081 0.919 15 C 0.085 3.915 16 N -0.885 5.885 17 Si 0.865 3.135 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.250 1.250 21 C -0.179 4.179 22 C -0.185 4.185 23 C 0.094 3.906 24 N -0.455 5.455 25 C 0.151 3.849 26 Cl -0.031 7.031 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.427 0.573 32 H 0.423 0.577 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.267 0.733 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -12.654 13.692 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.099 4.099 3 C -0.097 4.097 4 C 0.010 3.990 5 N -0.294 5.294 6 C 0.294 3.706 7 O -0.359 6.359 8 C 0.279 3.721 9 O -0.416 6.416 10 N -0.307 5.307 11 C 0.026 3.974 12 C -0.021 4.021 13 C -0.532 4.532 14 H 0.099 0.901 15 C -0.119 4.119 16 N -0.521 5.521 17 Si 0.692 3.308 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.173 1.173 21 C -0.216 4.216 22 C -0.223 4.223 23 C -0.067 4.067 24 N -0.164 5.164 25 C -0.013 4.013 26 Cl -0.003 7.003 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.180 0.820 31 H 0.266 0.734 32 H 0.262 0.738 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.109 0.891 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.953 -13.574 13.355 19.142 hybrid contribution 0.712 0.632 -0.234 0.981 sum -1.241 -12.941 13.120 18.470 Atomic orbital electron populations 1.20874 0.88859 1.04322 1.03368 1.20513 0.98382 0.90951 1.00018 1.21707 0.92252 0.99329 0.96441 1.18847 0.91855 0.87036 1.01256 1.43086 1.25667 1.09688 1.50981 1.20692 0.86938 0.84649 0.78372 1.90801 1.20067 1.81854 1.43206 1.19601 0.87048 0.84310 0.81118 1.90743 1.19102 1.83569 1.48166 1.45778 1.17388 1.11916 1.55658 1.21276 0.92244 0.84745 0.99156 1.19569 0.98849 0.86703 0.96982 1.20248 0.94645 1.47419 0.90930 0.90120 1.24927 0.98277 0.93442 0.95282 1.69884 1.36223 1.42404 1.03544 0.87074 0.86513 0.79278 0.77925 1.20488 1.21626 1.17335 1.22833 0.97152 1.06310 0.95339 1.23062 0.95907 1.00647 1.02719 1.22510 1.00329 0.84911 0.98934 1.66966 1.06591 1.30801 1.12073 1.21480 0.89691 0.87238 1.02912 1.98387 1.73339 1.31997 1.96530 0.90112 0.90154 0.90323 0.82001 0.73422 0.73819 0.92045 0.92037 0.92297 0.89446 0.90777 0.91027 0.89108 0.81252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.63 36.01 0.35 -0.61 16 2 C -0.10 -1.02 5.90 -104.47 -0.62 -1.64 16 3 C -0.07 -0.81 8.49 -39.09 -0.33 -1.14 16 4 C 0.11 1.23 6.32 -83.58 -0.53 0.70 16 5 N -0.65 -7.45 5.33 -10.19 -0.05 -7.51 16 6 C 0.51 7.61 7.74 -11.63 -0.09 7.52 16 7 O -0.49 -8.18 13.98 5.47 0.08 -8.11 16 8 C 0.50 8.53 7.88 -11.64 -0.09 8.44 16 9 O -0.54 -9.70 16.48 5.48 0.09 -9.61 16 10 N -0.66 -12.23 5.40 -60.76 -0.33 -12.56 16 11 C 0.15 2.94 5.12 -4.04 -0.02 2.92 16 12 C -0.02 -0.41 0.98 -155.66 -0.15 -0.57 16 13 C -0.50 -12.52 8.70 -34.44 -0.30 -12.82 16 14 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 15 C 0.09 2.28 5.46 -17.82 -0.10 2.18 16 16 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 17 Si 0.86 20.39 24.76 -169.99 -4.21 16.18 16 18 H -0.28 -6.65 7.03 56.52 0.40 -6.26 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.25 -5.47 5.98 56.52 0.34 -5.14 16 21 C -0.18 -3.23 9.93 -26.69 -0.27 -3.50 16 22 C -0.19 -3.53 8.50 -26.69 -0.23 -3.76 16 23 C 0.09 0.99 11.12 -17.32 -0.19 0.80 16 24 N -0.45 -5.51 10.33 -10.19 -0.11 -5.61 16 25 C 0.15 1.75 7.27 -17.43 -0.13 1.62 16 26 Cl -0.03 -0.31 27.45 -51.86 -1.42 -1.74 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.08 0.60 6.91 -51.93 -0.36 0.24 16 30 H 0.16 1.95 6.33 -52.49 -0.33 1.62 16 31 H 0.43 3.99 8.32 -40.82 -0.34 3.65 16 32 H 0.42 8.05 7.48 -40.82 -0.31 7.75 16 33 H 0.06 1.33 4.65 -51.93 -0.24 1.08 16 34 H 0.06 1.11 8.07 -51.92 -0.42 0.69 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 39 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 40 H 0.17 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 355.83 15.07 5.36 5.36 Total: -1.00 -29.84 355.83 -7.09 -36.93 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -4.58 Total: 11.18 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -2.69 Total: 0.15 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.29 Total: -50.36 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.21 Total: 16.18 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.42 Total: -1.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.84 -7.09 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797539035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.578 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds