Wall clock time and date at job start Tue Mar 31 2020 19:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38487 * 120.38393 * 2 1 4 4 C 1.39318 * 118.36905 * 180.23879 * 3 2 1 5 5 N 1.39803 * 120.47615 * 179.75647 * 4 3 2 6 6 C 1.34778 * 120.00103 * 324.82939 * 5 4 3 7 7 O 1.21379 * 119.99817 * 4.75367 * 6 5 4 8 8 C 1.49343 * 119.99957 * 184.76015 * 6 5 4 9 9 O 1.21370 * 120.00063 * 5.04671 * 8 6 5 10 10 N 1.34767 * 120.00143 * 185.04735 * 8 6 5 11 11 C 1.46508 * 120.00293 * 184.57483 * 10 8 6 12 12 C 1.52995 * 109.47284 * 184.52512 * 11 10 8 13 13 C 1.50708 * 115.54836 * 304.57019 * 12 11 10 14 14 H 1.07993 * 119.99871 * 119.55595 * 13 12 11 15 15 C 1.37878 * 119.99992 * 299.28515 * 13 12 11 16 16 N 1.31507 * 120.00230 * 173.02175 * 15 13 12 17 17 Si 1.86802 * 119.99916 * 353.01662 * 15 13 12 18 18 H 1.48502 * 109.47296 * 94.11663 * 17 15 13 19 19 H 1.48500 * 109.46965 * 214.11574 * 17 15 13 20 20 H 1.48504 * 109.47352 * 334.11470 * 17 15 13 21 21 C 1.52998 * 117.50433 * 90.24199 * 12 11 10 22 22 C 1.53001 * 117.50224 * 158.90511 * 12 11 10 23 23 C 1.38897 * 119.04449 * 359.49122 * 4 3 2 24 24 N 1.31811 * 120.66931 * 0.25133 * 23 4 3 25 25 C 1.31972 * 121.78323 * 0.02562 * 24 23 4 26 26 Cl 1.73607 * 119.54559 * 180.02562 * 25 24 23 27 27 H 1.09001 * 109.46962 * 270.27139 * 1 2 3 28 28 H 1.08997 * 109.47070 * 30.27929 * 1 2 3 29 29 H 1.09000 * 109.47131 * 150.27491 * 1 2 3 30 30 H 1.08001 * 120.81116 * 0.02562 * 3 2 1 31 31 H 0.96997 * 119.99280 * 144.81816 * 5 4 3 32 32 H 0.97003 * 120.00487 * 4.57343 * 10 8 6 33 33 H 1.08995 * 109.47035 * 64.52094 * 11 10 8 34 34 H 1.09007 * 109.46715 * 304.52242 * 11 10 8 35 35 H 0.96998 * 120.00534 * 179.97438 * 16 15 13 36 36 H 1.08996 * 117.49973 * 215.00284 * 21 12 11 37 37 H 1.09001 * 117.49462 * 0.02562 * 21 12 11 38 38 H 1.09008 * 117.49369 * 359.97301 * 22 12 11 39 39 H 1.08999 * 117.50349 * 144.96706 * 22 12 11 40 40 H 1.08004 * 119.66515 * 180.26732 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2075 1.1947 0.0000 4 6 3.5998 1.1457 -0.0051 5 7 4.3508 2.3249 -0.0104 6 6 3.9055 3.4044 -0.6834 7 8 2.8133 3.3817 -1.2125 8 6 4.7559 4.6284 -0.7782 9 8 5.8834 4.6202 -0.3291 10 7 4.2714 5.7420 -1.3625 11 6 5.1375 6.9093 -1.5457 12 6 4.3194 8.0658 -2.1237 13 6 3.5875 7.7666 -3.4066 14 1 2.5111 7.8447 -3.4450 15 6 4.2926 7.3986 -4.5329 16 7 3.6507 7.0053 -5.6112 17 14 6.1596 7.4590 -4.5272 18 1 6.6970 6.1232 -4.1639 19 1 6.6467 7.8379 -5.8779 20 1 6.6194 8.4640 -3.5353 21 6 3.6490 9.0208 -1.1341 22 6 4.8680 9.4818 -1.9371 23 6 4.2311 -0.0915 0.0008 24 7 3.5267 -1.2057 0.0061 25 6 2.2071 -1.1938 0.0056 26 17 1.3374 -2.6963 0.0134 27 1 -0.3633 0.0049 1.0277 28 1 -0.3633 0.8874 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6871 2.1410 0.0004 31 1 5.1922 2.3661 0.4704 32 1 3.3492 5.7707 -1.6619 33 1 5.9461 6.6577 -2.2318 34 1 5.5562 7.2056 -0.5838 35 1 4.1467 6.7467 -6.4037 36 1 2.6786 9.4328 -1.4110 37 1 3.7912 8.8255 -0.0712 38 1 5.8116 9.5895 -1.4021 39 1 4.6999 10.1969 -2.7424 40 1 5.3100 -0.1412 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797539035.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:15 Heat of formation + Delta-G solvation = -31.460208 kcal Electronic energy + Delta-G solvation = -25976.122982 eV Core-core repulsion = 22010.036528 eV Total energy + Delta-G solvation = -3966.086454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42800 -41.23133 -39.86928 -38.69335 -37.79744 -36.60387 -35.04747 -34.86430 -34.30078 -31.57478 -29.08166 -28.48515 -27.55386 -25.92028 -24.52057 -23.23504 -22.89686 -21.54709 -21.19556 -19.94608 -18.67568 -18.50634 -18.25808 -17.82696 -17.48756 -17.20284 -16.77335 -16.39060 -15.90260 -15.53963 -15.42784 -14.98730 -14.89365 -14.79661 -14.50640 -14.14312 -13.92737 -13.88128 -13.83225 -13.24516 -13.03340 -13.02045 -12.85063 -12.68200 -12.16723 -12.15727 -12.09082 -11.95134 -11.48915 -11.19662 -11.02826 -10.77611 -10.74673 -10.50228 -10.36865 -10.09595 -9.51033 -8.32180 -6.36465 -0.49761 -0.04439 0.28883 0.68749 1.09673 1.30177 1.37794 1.47371 1.94185 2.32823 2.41916 2.43843 2.95696 3.23069 3.34722 3.40099 3.58384 3.63442 3.71477 3.96219 4.25422 4.25802 4.35829 4.43765 4.49892 4.61474 4.71005 4.71128 4.79998 4.94633 5.00621 5.00895 5.11883 5.18027 5.28274 5.38129 5.54463 5.66330 5.72708 6.25563 6.29127 6.46937 6.54388 6.71715 6.81488 7.31580 8.82278 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.018716 B = 0.002550 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.660279 B =10976.769846 C =11128.483980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.096 4.096 3 C -0.079 4.079 4 C 0.095 3.905 5 N -0.625 5.625 6 C 0.517 3.483 7 O -0.512 6.512 8 C 0.504 3.496 9 O -0.544 6.544 10 N -0.667 5.667 11 C 0.154 3.846 12 C -0.048 4.048 13 C -0.481 4.481 14 H 0.042 0.958 15 C 0.033 3.967 16 N -0.938 5.938 17 Si 0.917 3.083 18 H -0.284 1.284 19 H -0.298 1.298 20 H -0.219 1.219 21 C -0.157 4.157 22 C -0.178 4.178 23 C 0.101 3.899 24 N -0.472 5.472 25 C 0.141 3.859 26 Cl -0.021 7.021 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.439 0.561 32 H 0.419 0.581 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -12.830 15.946 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.100 4.100 3 C -0.107 4.107 4 C -0.002 4.002 5 N -0.274 5.274 6 C 0.299 3.701 7 O -0.386 6.386 8 C 0.283 3.717 9 O -0.423 6.423 10 N -0.317 5.317 11 C 0.031 3.969 12 C -0.049 4.049 13 C -0.519 4.519 14 H 0.060 0.940 15 C -0.166 4.166 16 N -0.577 5.577 17 Si 0.743 3.257 18 H -0.211 1.211 19 H -0.226 1.226 20 H -0.141 1.141 21 C -0.194 4.194 22 C -0.216 4.216 23 C -0.059 4.059 24 N -0.182 5.182 25 C -0.023 4.023 26 Cl 0.008 6.992 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.173 0.827 31 H 0.280 0.720 32 H 0.256 0.744 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.660 -13.761 15.665 20.861 hybrid contribution 0.208 0.630 -0.863 1.088 sum -0.452 -13.131 14.802 19.792 Atomic orbital electron populations 1.20945 0.87222 1.04626 1.04561 1.20724 0.99610 0.90360 0.99293 1.21772 0.92655 0.99485 0.96744 1.18943 0.91873 0.87084 1.02272 1.42863 1.25845 1.08844 1.49825 1.20281 0.86362 0.84743 0.78748 1.90805 1.20907 1.82218 1.44646 1.19851 0.87060 0.84469 0.80281 1.90732 1.19450 1.83786 1.48356 1.45798 1.17112 1.12460 1.56346 1.21167 0.91568 0.84426 0.99748 1.19452 1.00855 0.88339 0.96263 1.20384 0.93198 1.45456 0.92850 0.94012 1.25627 1.02254 0.93688 0.95031 1.70026 1.37826 1.45353 1.04509 0.86248 0.81819 0.79650 0.78033 1.21078 1.22564 1.14114 1.22891 0.96634 1.03508 0.96401 1.23105 0.97647 0.98053 1.02781 1.22914 1.01538 0.84042 0.97442 1.67036 1.06997 1.31373 1.12803 1.21716 0.89854 0.87939 1.02785 1.98387 1.73080 1.31316 1.96445 0.88397 0.90036 0.89794 0.82651 0.72018 0.74365 0.93872 0.89549 0.92668 0.90000 0.87698 0.88239 0.90080 0.78456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 9.63 71.24 0.69 -1.08 16 2 C -0.10 -1.97 5.90 -19.77 -0.12 -2.09 16 3 C -0.08 -1.79 8.49 22.59 0.19 -1.59 16 4 C 0.10 2.05 6.32 38.29 0.24 2.29 16 5 N -0.62 -13.47 5.33 -304.51 -1.62 -15.10 16 6 C 0.52 14.95 7.74 87.24 0.68 15.63 16 7 O -0.51 -17.18 13.98 -3.34 -0.05 -17.23 16 8 C 0.50 16.52 7.88 87.24 0.69 17.21 16 9 O -0.54 -18.53 16.48 -3.31 -0.05 -18.58 16 10 N -0.67 -24.22 5.40 -464.51 -2.51 -26.72 16 11 C 0.15 5.75 5.12 86.38 0.44 6.19 16 12 C -0.05 -1.92 0.98 -52.93 -0.05 -1.97 16 13 C -0.48 -24.68 8.70 25.60 0.22 -24.45 16 14 H 0.04 2.41 8.06 -2.91 -0.02 2.38 16 15 C 0.03 1.80 5.46 84.66 0.46 2.26 16 16 N -0.94 -56.03 13.96 21.45 0.30 -55.73 16 17 Si 0.92 42.03 24.76 68.60 1.70 43.73 16 18 H -0.28 -13.18 7.03 99.48 0.70 -12.48 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.22 -8.82 5.98 99.48 0.60 -8.23 16 21 C -0.16 -5.23 9.93 30.62 0.30 -4.93 16 22 C -0.18 -6.21 8.50 30.62 0.26 -5.95 16 23 C 0.10 1.95 11.12 84.85 0.94 2.90 16 24 N -0.47 -10.74 10.33 -186.15 -1.92 -12.66 16 25 C 0.14 3.08 7.27 84.71 0.62 3.70 16 26 Cl -0.02 -0.39 27.45 -2.72 -0.07 -0.47 16 27 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 29 H 0.08 1.18 6.91 -2.39 -0.02 1.16 16 30 H 0.16 3.73 6.33 -2.91 -0.02 3.71 16 31 H 0.44 7.27 8.32 -92.71 -0.77 6.49 16 32 H 0.42 16.02 7.48 -92.71 -0.69 15.33 16 33 H 0.04 1.77 4.65 -2.39 -0.01 1.76 16 34 H 0.09 2.79 8.07 -2.38 -0.02 2.77 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 39 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -65.20 355.83 0.87 -64.33 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.46 Total: 30.31 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 5.56 Total: 8.12 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -5.75 Total: -110.21 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -0.10 Total: -35.81 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.70 Total: 43.73 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.07 Total: -0.47 kcal Total: -65.20 0.87 -64.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797539035.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.867 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds