Wall clock time and date at job start Tue Mar 31 2020 19:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31840 * 119.66269 * 2 1 4 4 C 1.31946 * 121.78030 * 180.02562 * 3 2 1 5 5 Cl 1.73607 * 119.54780 * 180.02562 * 4 3 2 6 6 C 1.38434 * 120.90020 * 0.02576 * 4 3 2 7 7 C 1.38438 * 119.22825 * 359.69558 * 6 4 3 8 8 C 1.38854 * 119.66036 * 180.02562 * 2 1 3 9 9 N 1.39792 * 120.48408 * 359.95553 * 8 2 1 10 10 C 1.34774 * 119.99916 * 154.75629 * 9 8 2 11 11 O 1.21375 * 120.00149 * 4.37763 * 10 9 8 12 12 C 1.49352 * 119.99694 * 184.37472 * 10 9 8 13 13 O 1.21355 * 120.00126 * 5.11667 * 12 10 9 14 14 N 1.34775 * 120.00100 * 185.11745 * 12 10 9 15 15 C 1.46500 * 120.00317 * 185.05697 * 14 12 10 16 16 C 1.52999 * 109.47102 * 184.73739 * 15 14 12 17 17 C 1.50694 * 115.55365 * 304.21310 * 16 15 14 18 18 H 1.08004 * 120.00120 * 95.26758 * 17 16 15 19 19 C 1.37875 * 119.99909 * 274.99518 * 17 16 15 20 20 N 1.31509 * 120.00371 * 355.49737 * 19 17 16 21 21 Si 1.86805 * 119.99810 * 175.49752 * 19 17 16 22 22 H 1.48505 * 109.47010 * 90.00175 * 21 19 17 23 23 H 1.48503 * 109.47012 * 209.99737 * 21 19 17 24 24 H 1.48497 * 109.47366 * 329.99921 * 21 19 17 25 25 C 1.53003 * 117.49822 * 89.88436 * 16 15 14 26 26 C 1.52999 * 117.49649 * 158.54428 * 16 15 14 27 27 H 1.08999 * 109.47665 * 269.97785 * 1 2 3 28 28 H 1.09007 * 109.47219 * 29.97893 * 1 2 3 29 29 H 1.09005 * 109.47332 * 149.97514 * 1 2 3 30 30 H 1.08002 * 120.38415 * 179.97438 * 6 4 3 31 31 H 1.08004 * 120.81332 * 180.27652 * 7 6 4 32 32 H 0.96998 * 119.99527 * 334.76506 * 9 8 2 33 33 H 0.97005 * 119.99960 * 5.05927 * 14 12 10 34 34 H 1.09002 * 109.46873 * 64.73851 * 15 14 12 35 35 H 1.09000 * 109.47048 * 304.73473 * 15 14 12 36 36 H 0.96999 * 120.00514 * 184.99694 * 20 19 17 37 37 H 1.09000 * 117.49929 * 215.00138 * 25 16 15 38 38 H 1.08995 * 117.49753 * 0.02670 * 25 16 15 39 39 H 1.08996 * 117.50363 * 359.97436 * 26 16 15 40 40 H 1.08998 * 117.50103 * 144.97567 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1456 0.0000 4 6 3.4780 1.1944 -0.0005 5 17 4.2778 2.7353 0.0002 6 6 4.2323 0.0336 -0.0016 7 6 3.5877 -1.1915 0.0043 8 6 2.1941 -1.2066 -0.0005 9 7 1.4982 -2.4190 -0.0001 10 6 2.0780 -3.5289 -0.4984 11 8 3.2316 -3.4945 -0.8742 12 6 1.3010 -4.8013 -0.5880 13 8 0.1223 -4.8140 -0.2998 14 7 1.9090 -5.9354 -0.9888 15 6 1.1249 -7.1575 -1.1833 16 6 2.0638 -8.3175 -1.5208 17 6 2.9631 -8.1008 -2.7104 18 1 3.9699 -7.7370 -2.5672 19 6 2.5025 -8.3724 -3.9813 20 7 1.3113 -8.9035 -4.1495 21 14 3.5707 -7.9859 -5.4643 22 1 4.4148 -9.1644 -5.7869 23 1 2.7053 -7.6637 -6.6272 24 1 4.4412 -6.8225 -5.1577 25 6 2.6194 -9.1386 -0.3555 26 6 1.5501 -9.7371 -1.2728 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 5.3112 0.0832 -0.0024 31 1 4.1509 -2.1130 0.0081 32 1 0.5980 -2.4613 0.3586 33 1 2.8658 -5.9424 -1.1485 34 1 0.4202 -7.0106 -2.0018 35 1 0.5775 -7.3874 -0.2692 36 1 1.0161 -9.1615 -5.0368 37 1 3.6354 -9.5221 -0.4493 38 1 2.3157 -8.8527 0.6515 39 1 0.5435 -9.8448 -0.8689 40 1 1.8623 -10.5144 -1.9703 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797539097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:44 Heat of formation + Delta-G solvation = -28.854838 kcal Electronic energy + Delta-G solvation = -25872.852715 eV Core-core repulsion = 21906.879238 eV Total energy + Delta-G solvation = -3965.973477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.51042 -41.17824 -39.77875 -38.48665 -37.81328 -36.62035 -35.01843 -34.20896 -33.97350 -32.06498 -29.09290 -28.46888 -27.43125 -25.88919 -24.08303 -23.27052 -22.87785 -21.53348 -21.30040 -20.02615 -18.75377 -18.29739 -17.91665 -17.50916 -17.45274 -17.01093 -16.67309 -16.32560 -15.98383 -15.68006 -15.37984 -15.01800 -14.85982 -14.65967 -14.45167 -13.94890 -13.73335 -13.55501 -13.51791 -13.23451 -12.95796 -12.84126 -12.82625 -12.75619 -12.38226 -12.35377 -11.99555 -11.96169 -11.42448 -11.16204 -10.97576 -10.84845 -10.52943 -10.45643 -10.17304 -9.92248 -9.39676 -8.11194 -6.24803 -0.49502 -0.01763 0.34919 0.68814 1.11660 1.40596 1.45324 1.52206 1.98062 2.40356 2.44091 2.49798 3.15608 3.19309 3.28772 3.48155 3.56072 3.70594 3.84568 4.20913 4.31043 4.46535 4.51932 4.60238 4.65323 4.68542 4.69071 4.83759 4.86066 4.93379 5.04506 5.10815 5.28971 5.30970 5.40933 5.51851 5.68878 5.76395 5.77634 6.29524 6.35918 6.50880 6.57321 6.82777 6.89701 7.45637 8.95116 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015875 B = 0.002555 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.354095 B =10957.123705 C =11775.867561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.126 3.874 3 N -0.476 5.476 4 C 0.148 3.852 5 Cl -0.025 7.025 6 C -0.133 4.133 7 C -0.084 4.084 8 C 0.090 3.910 9 N -0.621 5.621 10 C 0.519 3.481 11 O -0.508 6.508 12 C 0.502 3.498 13 O -0.548 6.548 14 N -0.663 5.663 15 C 0.173 3.827 16 C -0.003 4.003 17 C -0.507 4.507 18 H 0.060 0.940 19 C 0.031 3.969 20 N -0.902 5.902 21 Si 0.941 3.059 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.268 1.268 25 C -0.181 4.181 26 C -0.148 4.148 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.436 0.564 33 H 0.417 0.583 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.800 17.304 10.773 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.015 4.015 3 N -0.188 5.188 4 C -0.017 4.017 5 Cl 0.003 6.997 6 C -0.154 4.154 7 C -0.111 4.111 8 C -0.007 4.007 9 N -0.269 5.269 10 C 0.301 3.699 11 O -0.383 6.383 12 C 0.282 3.718 13 O -0.427 6.427 14 N -0.312 5.312 15 C 0.050 3.950 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.078 0.922 19 C -0.170 4.170 20 N -0.539 5.539 21 Si 0.767 3.233 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.193 1.193 25 C -0.218 4.218 26 C -0.186 4.186 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.190 0.810 31 H 0.187 0.813 32 H 0.277 0.723 33 H 0.254 0.746 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.203 18.132 10.513 20.994 hybrid contribution 0.961 -0.765 -1.167 1.694 sum 2.165 17.367 9.346 19.841 Atomic orbital electron populations 1.20901 0.85677 1.04944 1.05212 1.21325 0.98319 0.84899 0.96963 1.66862 1.08931 1.29148 1.13841 1.21826 0.89858 0.88301 1.01688 1.98402 1.76572 1.28167 1.96525 1.22004 1.03067 0.89571 1.00753 1.22215 0.92886 1.00227 0.95779 1.18773 0.92613 0.86014 1.03331 1.42948 1.20252 1.05339 1.58321 1.20290 0.86735 0.85121 0.77735 1.90703 1.16929 1.84591 1.46032 1.19849 0.87238 0.84906 0.79832 1.90734 1.16045 1.85846 1.50088 1.45783 1.13690 1.08842 1.62923 1.20855 0.92809 0.82811 0.98537 1.19077 0.97732 0.88964 0.94579 1.20639 0.98561 1.45220 0.90076 0.92179 1.25588 0.95698 0.94637 1.01070 1.70071 1.19227 1.41528 1.23108 0.85817 0.78946 0.78783 0.79719 1.20290 1.21635 1.19272 1.23061 0.98040 1.06197 0.94521 1.22393 0.96708 0.98022 1.01512 0.87630 0.89053 0.89569 0.80982 0.81315 0.72251 0.74573 0.93898 0.91979 0.93108 0.90065 0.88965 0.90567 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.62 71.24 0.69 -0.82 16 2 C 0.13 2.53 6.80 42.70 0.29 2.82 16 3 N -0.48 -10.70 10.25 -174.33 -1.79 -12.49 16 4 C 0.15 3.11 7.27 84.72 0.62 3.73 16 5 Cl -0.03 -0.46 29.10 -2.72 -0.08 -0.54 16 6 C -0.13 -2.53 9.87 22.36 0.22 -2.31 16 7 C -0.08 -1.82 8.90 22.59 0.20 -1.62 16 8 C 0.09 1.95 6.45 38.29 0.25 2.20 16 9 N -0.62 -13.38 4.95 -304.51 -1.51 -14.89 16 10 C 0.52 14.38 7.78 87.24 0.68 15.05 16 11 O -0.51 -15.59 13.46 -3.33 -0.04 -15.63 16 12 C 0.50 16.36 7.88 87.24 0.69 17.05 16 13 O -0.55 -19.21 16.48 -3.26 -0.05 -19.26 16 14 N -0.66 -23.90 5.40 -464.52 -2.51 -26.41 16 15 C 0.17 7.08 5.58 86.38 0.48 7.56 16 16 C 0.00 -0.12 1.60 -52.93 -0.08 -0.21 16 17 C -0.51 -24.97 8.14 25.60 0.21 -24.76 16 18 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 19 C 0.03 1.61 5.43 84.65 0.46 2.07 16 20 N -0.90 -48.70 12.65 21.45 0.27 -48.43 16 21 Si 0.94 41.46 29.54 68.60 2.03 43.49 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 C -0.18 -6.82 9.93 30.62 0.30 -6.52 16 26 C -0.15 -6.34 9.18 30.62 0.28 -6.06 16 27 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.09 1.08 6.99 -2.38 -0.02 1.06 16 30 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 31 H 0.17 3.92 5.62 -2.91 -0.02 3.90 16 32 H 0.44 7.64 6.93 -92.71 -0.64 7.00 16 33 H 0.42 14.99 7.49 -92.70 -0.69 14.29 16 34 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.36 8.06 -2.39 -0.02 2.34 16 36 H 0.26 13.59 8.32 -92.71 -0.77 12.82 16 37 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 38 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -58.85 363.85 1.37 -57.48 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.22 Total: 28.50 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.28 Total: 8.18 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -5.53 Total: -102.22 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.10 Total: -34.89 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -58.85 1.37 -57.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797539097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.621 kcal (2) G-P(sol) polarization free energy of solvation -58.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds