Wall clock time and date at job start Tue Mar 31 2020 20:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.47144 * 2 1 4 4 C 1.34543 * 116.99536 * 180.02562 * 3 2 1 5 5 O 1.21429 * 120.00425 * 0.02562 * 4 3 2 6 6 O 1.34607 * 119.99627 * 179.97438 * 4 3 2 7 7 C 1.35770 * 117.00119 * 175.08988 * 6 4 3 8 8 C 1.38975 * 119.91307 * 256.81511 * 7 6 4 9 9 C 1.37704 * 120.10111 * 179.76299 * 8 7 6 10 10 C 1.39778 * 119.89853 * 0.53647 * 9 8 7 11 11 C 1.47502 * 120.09193 * 179.69951 * 10 9 8 12 12 O 1.21500 * 120.00386 * 180.02562 * 11 10 9 13 13 O 1.34745 * 120.00213 * 0.02562 * 11 10 9 14 14 C 1.45200 * 117.00324 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47253 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99677 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99750 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99807 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00061 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99900 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00094 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00106 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46955 * 90.00433 * 22 20 18 24 24 H 1.48505 * 109.46657 * 210.00112 * 22 20 18 25 25 H 1.48491 * 109.46976 * 329.99949 * 22 20 18 26 26 C 1.39767 * 119.81106 * 359.72091 * 10 9 8 27 27 C 1.37703 * 119.90740 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47164 * 300.00309 * 1 2 3 30 30 H 1.08999 * 109.47193 * 59.99658 * 1 2 3 31 31 H 1.09003 * 109.47298 * 240.00330 * 2 1 3 32 32 H 1.08999 * 109.47193 * 120.00342 * 2 1 3 33 33 H 1.08009 * 119.94505 * 0.02562 * 8 7 6 34 34 H 1.07993 * 120.05278 * 180.26027 * 9 8 7 35 35 H 1.09004 * 109.46806 * 299.99660 * 14 13 11 36 36 H 1.08996 * 109.47226 * 59.99262 * 14 13 11 37 37 H 0.96996 * 120.00526 * 0.02562 * 17 15 14 38 38 H 0.96994 * 120.00092 * 179.97438 * 21 20 18 39 39 H 1.08009 * 120.04452 * 179.97438 * 26 10 9 40 40 H 1.08001 * 119.95033 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3478 1.5452 -0.0005 5 8 4.0875 0.5822 -0.0015 6 8 3.8624 2.7890 -0.0011 7 6 5.2118 2.8980 0.1019 8 6 5.7869 3.2660 1.3123 9 6 7.1554 3.3729 1.4225 10 6 7.9656 3.1216 0.3115 11 6 9.4315 3.2413 0.4230 12 8 10.1342 3.0229 -0.5439 13 8 9.9915 3.5929 1.5970 14 6 11.4396 3.6918 1.6333 15 6 11.8812 4.0934 3.0171 16 8 11.0564 4.2786 3.8870 17 7 13.1925 4.2468 3.2879 18 6 13.5943 4.6117 4.5469 19 1 12.8600 4.7766 5.3216 20 6 14.9462 4.7704 4.8261 21 7 15.3313 5.1206 6.0327 22 14 16.2161 4.4873 3.4857 23 1 16.4694 5.7618 2.7668 24 1 17.4805 4.0036 4.0962 25 1 15.7081 3.4717 2.5290 26 6 7.3826 2.7569 -0.9053 27 6 6.0137 2.6462 -1.0049 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.1598 3.4644 2.1691 34 1 7.6018 3.6549 2.3646 35 1 11.8762 2.7262 1.3782 36 1 11.7707 4.4415 0.9147 37 1 13.8520 4.0992 2.5922 38 1 16.2750 5.2311 6.2277 39 1 8.0050 2.5622 -1.7663 40 1 5.5625 2.3649 -1.9450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800287200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:51 Heat of formation + Delta-G solvation = -201.653106 kcal Electronic energy + Delta-G solvation = -27141.377933 eV Core-core repulsion = 22694.909445 eV Total energy + Delta-G solvation = -4446.468488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.96193 -40.62974 -39.76439 -38.49789 -37.90996 -36.66729 -36.21168 -34.07933 -32.40468 -31.82554 -31.59369 -31.15531 -28.60347 -25.75957 -24.57774 -23.69500 -23.28351 -22.47624 -21.01578 -19.76975 -19.67195 -18.70122 -18.59962 -18.23549 -17.73154 -16.90398 -16.49250 -16.44130 -15.99649 -15.67243 -15.09179 -14.81786 -14.73787 -14.39156 -14.23438 -13.96329 -13.85581 -13.43359 -13.22808 -12.99417 -12.94160 -12.77384 -12.41964 -12.35709 -12.25028 -12.19979 -12.13267 -11.62810 -11.27552 -11.22684 -11.19083 -10.67743 -10.65601 -10.58142 -10.06164 -9.68928 -9.49331 -9.33079 -8.69185 -8.30592 -6.40327 -3.93371 -0.04178 0.91143 1.14379 1.82357 2.34193 2.48669 2.98179 3.02832 3.11673 3.33537 3.53796 3.58666 4.02883 4.27035 4.31688 4.32393 4.38299 4.40766 4.63267 4.71646 4.75824 4.88255 4.98576 5.09974 5.16833 5.17311 5.28439 5.37388 5.52007 5.52191 5.55677 5.64925 5.72288 5.77685 5.92870 6.07802 6.35356 6.39181 7.42900 7.43039 7.68299 7.99354 8.46246 8.82350 9.28541 9.63661 10.71869 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.001757 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.983030 B =15935.184922 C =16471.746642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.075 3.925 3 O -0.326 6.326 4 C 0.599 3.401 5 O -0.526 6.526 6 O -0.262 6.262 7 C 0.116 3.884 8 C -0.121 4.121 9 C -0.043 4.043 10 C -0.109 4.109 11 C 0.506 3.494 12 O -0.507 6.507 13 O -0.318 6.318 14 C 0.059 3.941 15 C 0.448 3.552 16 O -0.557 6.557 17 N -0.578 5.578 18 C -0.309 4.309 19 H 0.123 0.877 20 C 0.046 3.954 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.268 1.268 26 C -0.041 4.041 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.373 0.627 38 H 0.276 0.724 39 H 0.150 0.850 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.260 -8.232 -16.372 31.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.003 3.997 3 O -0.244 6.244 4 C 0.408 3.592 5 O -0.423 6.423 6 O -0.178 6.178 7 C 0.075 3.925 8 C -0.139 4.139 9 C -0.061 4.061 10 C -0.110 4.110 11 C 0.351 3.649 12 O -0.397 6.397 13 O -0.233 6.233 14 C -0.019 4.019 15 C 0.232 3.768 16 O -0.439 6.439 17 N -0.218 5.218 18 C -0.437 4.437 19 H 0.140 0.860 20 C -0.158 4.158 21 N -0.513 5.513 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.193 1.193 26 C -0.060 4.060 27 C -0.142 4.142 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.163 0.837 34 H 0.177 0.823 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.206 0.794 38 H 0.086 0.914 39 H 0.167 0.833 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.353 -8.231 -15.883 31.029 hybrid contribution 1.374 -0.350 -1.079 1.782 sum -23.979 -8.581 -16.962 30.599 Atomic orbital electron populations 1.21865 0.91515 1.03620 1.04093 1.23335 0.95515 0.77193 1.03693 1.86297 1.18081 1.34450 1.85588 1.20567 0.82634 0.81970 0.73998 1.91155 1.60099 1.40045 1.51026 1.84271 1.22046 1.26520 1.84975 1.18678 0.78473 1.00968 0.94378 1.21209 0.95267 1.01232 0.96195 1.21574 0.92040 0.93299 0.99151 1.19298 0.89948 1.06134 0.95615 1.21039 0.88988 0.73697 0.81214 1.90836 1.63722 1.46608 1.38511 1.86592 1.23956 1.78829 1.33892 1.22800 0.76908 1.03285 0.98893 1.19156 0.83537 0.85701 0.88360 1.90602 1.51549 1.54314 1.47455 1.42025 1.05042 1.62272 1.12495 1.19427 0.93736 1.43687 0.86850 0.85982 1.25035 0.97030 0.97117 0.96645 1.69613 1.17058 1.45446 1.19225 0.86679 0.82066 0.79064 0.81702 1.19392 1.19943 1.19345 1.21126 0.93835 0.94083 0.96913 1.21216 0.93331 1.00956 0.98698 0.89292 0.91000 0.91073 0.90345 0.90268 0.83667 0.82264 0.89204 0.89187 0.79360 0.91372 0.83279 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 10.29 37.16 0.38 -0.08 16 2 C 0.08 0.42 6.19 37.16 0.23 0.65 16 3 O -0.33 -2.81 10.27 -47.98 -0.49 -3.31 16 4 C 0.60 6.33 8.82 101.05 0.89 7.22 16 5 O -0.53 -6.65 15.66 -27.40 -0.43 -7.08 16 6 O -0.26 -2.75 10.06 -31.95 -0.32 -3.08 16 7 C 0.12 1.24 5.15 -39.03 -0.20 1.04 16 8 C -0.12 -1.23 9.97 -39.50 -0.39 -1.63 16 9 C -0.04 -0.49 9.61 -39.20 -0.38 -0.87 16 10 C -0.11 -1.37 5.87 -104.97 -0.62 -1.99 16 11 C 0.51 7.75 7.89 34.51 0.27 8.02 16 12 O -0.51 -8.37 16.13 -19.27 -0.31 -8.68 16 13 O -0.32 -5.55 9.00 -47.30 -0.43 -5.97 16 14 C 0.06 1.03 5.95 36.01 0.21 1.24 16 15 C 0.45 10.16 7.86 -10.99 -0.09 10.08 16 16 O -0.56 -14.95 16.08 -14.12 -0.23 -15.18 16 17 N -0.58 -13.53 5.09 -10.96 -0.06 -13.59 16 18 C -0.31 -8.55 10.16 -14.93 -0.15 -8.70 16 19 H 0.12 3.85 7.39 -52.48 -0.39 3.47 16 20 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 21 N -0.87 -24.95 13.96 55.50 0.77 -24.18 16 22 Si 0.88 18.90 27.74 -169.99 -4.71 14.18 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 26 C -0.04 -0.44 9.59 -39.21 -0.38 -0.82 16 27 C -0.12 -1.23 9.55 -39.50 -0.38 -1.61 16 28 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 34 H 0.16 1.86 7.60 -52.49 -0.40 1.46 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 38 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.15 1.43 7.64 -52.48 -0.40 1.03 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -34.74 366.90 -5.75 -40.49 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.39 Total: 7.19 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: -0.68 Total: 13.68 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.72 Total: -37.77 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -2.21 Total: -43.30 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.74 -5.75 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800287200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.163 kcal (2) G-P(sol) polarization free energy of solvation -34.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds