Wall clock time and date at job start Tue Mar 31 2020 20:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.47144 * 2 1 4 4 C 1.34543 * 116.99536 * 180.02562 * 3 2 1 5 5 O 1.21429 * 120.00425 * 0.02562 * 4 3 2 6 6 O 1.34607 * 119.99627 * 179.97438 * 4 3 2 7 7 C 1.35770 * 117.00119 * 175.08988 * 6 4 3 8 8 C 1.38975 * 119.91307 * 256.81511 * 7 6 4 9 9 C 1.37704 * 120.10111 * 179.76299 * 8 7 6 10 10 C 1.39778 * 119.89853 * 0.53647 * 9 8 7 11 11 C 1.47502 * 120.09193 * 179.69951 * 10 9 8 12 12 O 1.21500 * 120.00386 * 180.02562 * 11 10 9 13 13 O 1.34745 * 120.00213 * 0.02562 * 11 10 9 14 14 C 1.45200 * 117.00324 * 180.02562 * 13 11 10 15 15 C 1.50702 * 109.47253 * 179.97438 * 14 13 11 16 16 O 1.21296 * 119.99677 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99750 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99807 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00061 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99900 * 180.02562 * 18 17 15 21 21 N 1.31417 * 120.00094 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00106 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46955 * 90.00433 * 22 20 18 24 24 H 1.48505 * 109.46657 * 210.00112 * 22 20 18 25 25 H 1.48491 * 109.46976 * 329.99949 * 22 20 18 26 26 C 1.39767 * 119.81106 * 359.72091 * 10 9 8 27 27 C 1.37703 * 119.90740 * 359.97438 * 26 10 9 28 28 H 1.08997 * 109.47157 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47164 * 300.00309 * 1 2 3 30 30 H 1.08999 * 109.47193 * 59.99658 * 1 2 3 31 31 H 1.09003 * 109.47298 * 240.00330 * 2 1 3 32 32 H 1.08999 * 109.47193 * 120.00342 * 2 1 3 33 33 H 1.08009 * 119.94505 * 0.02562 * 8 7 6 34 34 H 1.07993 * 120.05278 * 180.26027 * 9 8 7 35 35 H 1.09004 * 109.46806 * 299.99660 * 14 13 11 36 36 H 1.08996 * 109.47226 * 59.99262 * 14 13 11 37 37 H 0.96996 * 120.00526 * 0.02562 * 17 15 14 38 38 H 0.96994 * 120.00092 * 179.97438 * 21 20 18 39 39 H 1.08009 * 120.04452 * 179.97438 * 26 10 9 40 40 H 1.08001 * 119.95033 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3478 1.5452 -0.0005 5 8 4.0875 0.5822 -0.0015 6 8 3.8624 2.7890 -0.0011 7 6 5.2118 2.8980 0.1019 8 6 5.7869 3.2660 1.3123 9 6 7.1554 3.3729 1.4225 10 6 7.9656 3.1216 0.3115 11 6 9.4315 3.2413 0.4230 12 8 10.1342 3.0229 -0.5439 13 8 9.9915 3.5929 1.5970 14 6 11.4396 3.6918 1.6333 15 6 11.8812 4.0934 3.0171 16 8 11.0564 4.2786 3.8870 17 7 13.1925 4.2468 3.2879 18 6 13.5943 4.6117 4.5469 19 1 12.8600 4.7766 5.3216 20 6 14.9462 4.7704 4.8261 21 7 15.3313 5.1206 6.0327 22 14 16.2161 4.4873 3.4857 23 1 16.4694 5.7618 2.7668 24 1 17.4805 4.0036 4.0962 25 1 15.7081 3.4717 2.5290 26 6 7.3826 2.7569 -0.9053 27 6 6.0137 2.6462 -1.0049 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 5.1598 3.4644 2.1691 34 1 7.6018 3.6549 2.3646 35 1 11.8762 2.7262 1.3782 36 1 11.7707 4.4415 0.9147 37 1 13.8520 4.0992 2.5922 38 1 16.2750 5.2311 6.2277 39 1 8.0050 2.5622 -1.7663 40 1 5.5625 2.3649 -1.9450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800287200.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:50 Heat of formation + Delta-G solvation = -223.035026 kcal Electronic energy + Delta-G solvation = -27142.305122 eV Core-core repulsion = 22694.909445 eV Total energy + Delta-G solvation = -4447.395677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 337.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.77584 -41.80485 -40.64303 -40.15564 -38.88329 -37.57624 -37.43503 -36.08401 -33.86776 -32.85587 -32.43546 -32.03938 -30.11687 -26.88197 -26.12144 -24.45608 -24.13389 -23.21086 -22.04794 -21.54796 -20.55159 -20.51423 -19.52793 -19.30313 -18.57185 -18.11075 -17.77920 -17.55308 -17.16217 -16.83158 -16.68525 -15.86315 -15.85417 -15.45689 -15.38200 -15.00277 -14.79202 -14.73277 -14.35107 -14.21517 -14.08330 -13.72288 -13.62973 -13.57923 -13.39201 -13.00401 -12.98965 -12.61786 -12.46855 -12.45808 -12.03559 -12.01011 -11.91461 -11.86281 -11.69195 -11.58605 -10.61298 -10.33964 -10.31305 -10.22135 -8.45876 -6.09091 -0.93078 0.09158 0.36338 1.00554 1.22402 1.30669 1.31396 1.34111 1.45088 1.75755 2.20494 2.44988 2.75499 2.88351 3.08663 3.46760 3.60191 3.64401 3.88105 3.90455 3.95824 3.95995 4.08570 4.09621 4.13561 4.15569 4.32386 4.59709 4.75947 4.80784 4.89107 4.89978 4.94879 5.06827 5.14908 5.18865 5.34815 5.47271 5.56257 5.85343 6.41847 6.53516 6.64550 6.77231 7.25649 7.77264 8.70638 Molecular weight = 337.11amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.001757 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.983030 B =15935.184922 C =16471.746642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.066 3.934 3 O -0.327 6.327 4 C 0.602 3.398 5 O -0.550 6.550 6 O -0.262 6.262 7 C 0.110 3.890 8 C -0.119 4.119 9 C -0.047 4.047 10 C -0.126 4.126 11 C 0.511 3.489 12 O -0.519 6.519 13 O -0.337 6.337 14 C 0.068 3.932 15 C 0.449 3.551 16 O -0.607 6.607 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.061 0.939 20 C -0.006 4.006 21 N -0.925 5.925 22 Si 0.961 3.039 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.231 1.231 26 C -0.035 4.035 27 C -0.120 4.120 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.393 0.607 38 H 0.282 0.718 39 H 0.162 0.838 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.591 -9.319 -19.608 33.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.006 4.006 3 O -0.245 6.245 4 C 0.412 3.588 5 O -0.449 6.449 6 O -0.178 6.178 7 C 0.069 3.931 8 C -0.137 4.137 9 C -0.065 4.065 10 C -0.127 4.127 11 C 0.357 3.643 12 O -0.410 6.410 13 O -0.253 6.253 14 C -0.009 4.009 15 C 0.236 3.764 16 O -0.492 6.492 17 N -0.217 5.217 18 C -0.463 4.463 19 H 0.079 0.921 20 C -0.207 4.207 21 N -0.565 5.565 22 Si 0.780 3.220 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.154 1.154 26 C -0.053 4.053 27 C -0.138 4.138 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.229 0.771 38 H 0.092 0.908 39 H 0.180 0.820 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -25.714 -9.323 -19.144 33.386 hybrid contribution 1.262 -0.023 -0.003 1.262 sum -24.452 -9.347 -19.147 32.433 Atomic orbital electron populations 1.21909 0.89425 1.05036 1.04154 1.23693 0.97054 0.75890 1.03997 1.86343 1.16792 1.36340 1.85039 1.20644 0.83124 0.81565 0.73424 1.91139 1.60766 1.40649 1.52302 1.84268 1.21919 1.26659 1.84931 1.18877 0.78764 1.00714 0.94750 1.21361 0.94882 1.00578 0.96908 1.21523 0.92576 0.93669 0.98721 1.19299 0.88506 1.08074 0.96836 1.21370 0.89814 0.72916 0.80237 1.90819 1.64178 1.47422 1.38560 1.86590 1.23799 1.79446 1.35416 1.22669 0.77588 1.05526 0.95150 1.20137 0.82770 0.83448 0.90068 1.90581 1.52892 1.55867 1.49820 1.41795 1.05969 1.62481 1.11454 1.19011 0.93432 1.46077 0.87741 0.92061 1.26076 0.99167 0.95672 0.99741 1.69781 1.18133 1.46343 1.22218 0.85425 0.77799 0.80425 0.78325 1.17919 1.19753 1.15437 1.21251 0.94254 0.93314 0.96490 1.21448 0.92929 0.99986 0.99394 0.87126 0.91068 0.90852 0.89857 0.90241 0.81882 0.83025 0.86376 0.86162 0.77059 0.90832 0.82018 0.82023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 71.98 0.74 0.12 16 2 C 0.07 0.64 6.19 71.98 0.45 1.09 16 3 O -0.33 -5.24 10.27 -46.95 -0.48 -5.73 16 4 C 0.60 12.01 8.82 113.37 1.00 13.01 16 5 O -0.55 -13.31 15.66 27.90 0.44 -12.87 16 6 O -0.26 -5.13 10.06 10.42 0.10 -5.03 16 7 C 0.11 2.19 5.15 22.63 0.12 2.31 16 8 C -0.12 -2.33 9.97 22.32 0.22 -2.11 16 9 C -0.05 -1.06 9.61 22.52 0.22 -0.84 16 10 C -0.13 -3.06 5.87 -20.09 -0.12 -3.18 16 11 C 0.51 14.99 7.89 70.26 0.55 15.55 16 12 O -0.52 -16.06 16.13 19.84 0.32 -15.74 16 13 O -0.34 -11.50 9.00 -50.17 -0.45 -11.95 16 14 C 0.07 2.24 5.95 71.24 0.42 2.66 16 15 C 0.45 20.43 7.86 87.66 0.69 21.12 16 16 O -0.61 -33.88 16.08 15.72 0.25 -33.63 16 17 N -0.58 -26.72 5.09 -306.98 -1.56 -28.28 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.33 16 19 H 0.06 4.18 7.39 -2.91 -0.02 4.16 16 20 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 21 N -0.93 -54.45 13.96 21.66 0.30 -54.14 16 22 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 23 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.23 -7.63 6.52 99.48 0.65 -6.98 16 26 C -0.04 -0.69 9.59 22.51 0.22 -0.48 16 27 C -0.12 -2.14 9.55 22.32 0.21 -1.93 16 28 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.15 3.64 7.60 -2.91 -0.02 3.62 16 35 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 36 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.39 14.94 5.76 -92.71 -0.53 14.41 16 38 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.16 2.74 7.64 -2.91 -0.02 2.72 16 40 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -79.27 366.90 7.37 -71.90 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.51 Total: 26.80 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 6.04 Total: 29.12 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.26 Total: -82.43 kcal Atomic # 8 Polarization: -85.12 SS G_CDS: 0.18 Total: -84.94 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -79.27 7.37 -71.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800287200.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.140 kcal (2) G-P(sol) polarization free energy of solvation -79.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds