Wall clock time and date at job start Tue Mar 31 2020 19:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48508 * 109.47249 * 269.99895 * 3 2 1 5 5 H 1.48505 * 109.47255 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.47245 * 150.00225 * 3 2 1 7 7 C 1.38800 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99811 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00065 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99839 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47025 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.46986 * 179.97438 * 12 11 10 14 14 C 1.34238 * 117.00118 * 179.97438 * 13 12 11 15 15 O 1.20825 * 119.99345 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00360 * 179.97438 * 14 13 12 17 17 N 1.46492 * 109.47426 * 180.02562 * 16 14 13 18 18 C 1.36319 * 126.28134 * 265.00280 * 17 16 14 19 19 N 1.30139 * 109.98121 * 179.97438 * 18 17 16 20 20 C 1.35474 * 109.43978 * 359.97438 * 19 18 17 21 21 C 1.37203 * 126.28024 * 84.99804 * 17 16 14 22 22 N 1.32892 * 134.91178 * 0.02562 * 21 17 16 23 23 C 1.31651 * 120.63683 * 179.97438 * 22 21 17 24 24 N 1.32037 * 122.46350 * 0.02562 * 23 22 21 25 25 C 1.32914 * 121.19189 * 359.97438 * 24 23 22 26 26 N 1.38395 * 120.76956 * 179.73041 * 25 24 23 27 27 H 0.96999 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.08990 * 109.47058 * 60.00250 * 10 9 7 29 29 H 1.09008 * 109.46732 * 299.99926 * 10 9 7 30 30 H 1.08999 * 109.47692 * 59.99447 * 11 10 9 31 31 H 1.09001 * 109.47012 * 299.99987 * 11 10 9 32 32 H 1.09002 * 109.47077 * 60.00035 * 12 11 10 33 33 H 1.09000 * 109.46810 * 299.99829 * 12 11 10 34 34 H 1.09007 * 109.46939 * 60.00173 * 16 14 13 35 35 H 1.09001 * 109.47107 * 300.00698 * 16 14 13 36 36 H 1.08003 * 125.01353 * 0.03470 * 18 17 16 37 37 H 1.07996 * 118.76536 * 179.97438 * 23 22 21 38 38 H 0.97001 * 120.00101 * 0.02562 * 26 25 24 39 39 H 0.97001 * 119.99361 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5958 -3.2362 0.0002 12 6 5.8615 -4.7430 0.0011 13 8 7.2936 -4.9819 0.0006 14 6 7.6980 -6.2619 0.0018 15 8 6.8821 -7.1531 0.0028 16 6 9.1694 -6.5873 0.0008 17 7 9.3480 -8.0413 0.0018 18 6 9.5423 -8.8294 1.0970 19 7 9.6622 -10.0734 0.7341 20 6 9.5521 -10.1626 -0.6132 21 6 9.3503 -8.8598 -1.0993 22 7 9.2111 -8.6728 -2.4077 23 6 9.2623 -9.6914 -3.2401 24 7 9.4507 -10.9325 -2.8308 25 6 9.6001 -11.2167 -1.5410 26 7 9.7915 -12.5215 -1.1212 27 1 -0.4850 0.8400 -0.0004 28 1 3.6434 -3.4317 -0.8895 29 1 3.6440 -3.4313 0.8905 30 1 6.0387 -2.7890 0.8901 31 1 6.0387 -2.7893 -0.8898 32 1 5.4185 -5.1906 -0.8886 33 1 5.4186 -5.1895 0.8914 34 1 9.6360 -6.1630 0.8899 35 1 9.6343 -6.1651 -0.8901 36 1 9.5889 -8.4740 2.1158 37 1 9.1451 -9.5049 -4.2974 38 1 9.8182 -13.2412 -1.7710 39 1 9.8997 -12.7161 -0.1771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805484113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:27 Heat of formation + Delta-G solvation = 12.086508 kcal Electronic energy + Delta-G solvation = -24813.193116 eV Core-core repulsion = 20883.331447 eV Total energy + Delta-G solvation = -3929.861669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.98484 -40.74294 -39.57758 -37.07330 -36.13172 -34.43130 -33.70722 -32.49094 -32.35594 -29.66885 -29.17265 -26.55309 -25.62988 -24.63153 -23.99754 -22.28135 -21.52887 -20.98412 -19.00868 -18.85116 -18.33668 -17.46157 -17.35995 -17.00110 -16.84789 -16.53151 -15.91513 -15.23110 -15.05344 -15.04148 -14.70740 -14.51195 -14.40007 -13.86497 -13.52092 -13.21551 -12.87486 -12.71088 -12.57423 -12.48941 -11.95670 -11.62778 -11.33596 -11.16454 -11.13395 -11.04230 -10.82080 -10.49233 -10.47326 -10.27116 -9.86988 -9.71951 -9.44524 -9.05978 -8.66459 -8.32704 -7.02664 -6.33243 -4.07200 0.46637 0.97594 1.56035 1.77130 2.17469 2.49540 2.87676 2.95489 3.26249 3.40439 3.49938 3.55535 3.61345 3.69488 3.93305 4.20136 4.25423 4.28558 4.37903 4.51244 4.65771 4.72346 4.92811 5.01946 5.05515 5.23904 5.27947 5.43268 5.58926 5.61855 5.93300 5.99463 6.18883 6.24374 6.25132 6.40778 6.47651 6.69516 7.17049 7.22867 7.35770 7.90219 7.94807 8.39532 9.11869 10.76114 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.029957 B = 0.001710 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.438622 B =16373.673779 C =16610.959150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.092 3.908 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.238 1.238 7 C -0.506 4.506 8 H 0.089 0.911 9 S -0.204 6.204 10 C -0.085 4.085 11 C -0.100 4.100 12 C 0.074 3.926 13 O -0.350 6.350 14 C 0.444 3.556 15 O -0.492 6.492 16 C 0.124 3.876 17 N -0.465 5.465 18 C 0.262 3.738 19 N -0.459 5.459 20 C -0.109 4.109 21 C 0.314 3.686 22 N -0.557 5.557 23 C 0.366 3.634 24 N -0.593 5.593 25 C 0.508 3.492 26 N -0.819 5.819 27 H 0.271 0.729 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.225 0.775 37 H 0.206 0.794 38 H 0.410 0.590 39 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.412 -20.652 0.059 32.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.116 4.116 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.654 4.654 8 H 0.107 0.893 9 S 0.023 5.977 10 C -0.234 4.234 11 C -0.139 4.139 12 C 0.000 4.000 13 O -0.266 6.266 14 C 0.284 3.716 15 O -0.378 6.378 16 C 0.000 4.000 17 N -0.159 5.159 18 C -0.025 4.025 19 N -0.177 5.177 20 C -0.235 4.235 21 C 0.073 3.927 22 N -0.282 5.282 23 C 0.075 3.925 24 N -0.322 5.322 25 C 0.254 3.746 26 N -0.361 5.361 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.241 0.759 37 H 0.222 0.778 38 H 0.240 0.760 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 25.661 -20.244 -0.307 32.686 hybrid contribution -1.106 0.008 0.466 1.200 sum 24.555 -20.235 0.160 31.818 Atomic orbital electron populations 1.69935 1.05921 1.27798 1.47941 1.24795 0.94526 0.99037 0.93265 0.86671 0.81706 0.83192 0.79764 1.19296 1.20005 1.16164 1.22118 0.86930 0.97536 1.58790 0.89300 1.84154 1.11877 1.04074 1.97563 1.22949 0.95862 1.00273 1.04275 1.21339 0.96068 0.91957 1.04524 1.23306 0.75477 0.98252 1.03007 1.86436 1.29451 1.27362 1.83373 1.23618 0.92301 0.81878 0.73784 1.90759 1.55064 1.47982 1.43983 1.21206 0.91584 0.78095 1.09134 1.44602 1.58858 1.06878 1.05539 1.25406 0.99363 0.84917 0.92780 1.70204 1.19872 1.17936 1.09708 1.19603 1.17451 0.94062 0.92408 1.18636 0.97400 0.88359 0.88271 1.67269 1.23954 1.37075 0.99871 1.24483 0.87877 0.80864 0.99281 1.68051 1.26671 1.24330 1.13189 1.17778 0.85052 0.84728 0.87017 1.42206 1.77494 1.04215 1.12198 0.91888 0.90981 0.90968 0.90144 0.90112 0.90833 0.90837 0.83837 0.84265 0.75858 0.77799 0.75958 0.75009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 3 Si 0.86 21.14 27.74 -169.99 -4.71 16.43 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.67 6.74 56.52 0.38 -5.29 16 7 C -0.51 -14.48 10.04 30.94 0.31 -14.17 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.20 -4.83 19.41 -107.50 -2.09 -6.92 16 10 C -0.09 -1.58 5.67 37.16 0.21 -1.37 16 11 C -0.10 -1.44 5.60 -26.73 -0.15 -1.59 16 12 C 0.07 0.96 5.47 37.16 0.20 1.16 16 13 O -0.35 -4.00 10.22 -39.28 -0.40 -4.41 16 14 C 0.44 4.83 8.03 36.00 0.29 5.12 16 15 O -0.49 -7.30 16.18 -18.75 -0.30 -7.61 16 16 C 0.12 0.80 6.75 -5.20 -0.04 0.77 16 17 N -0.46 -4.19 2.28 -118.92 -0.27 -4.46 16 18 C 0.26 2.02 12.51 -89.50 -1.12 0.90 16 19 N -0.46 -4.65 11.28 -11.85 -0.13 -4.79 16 20 C -0.11 -1.24 7.17 -84.55 -0.61 -1.84 16 21 C 0.31 3.67 8.05 -155.80 -1.25 2.42 16 22 N -0.56 -6.54 10.47 -13.90 -0.15 -6.69 16 23 C 0.37 3.61 12.25 -92.07 -1.13 2.48 16 24 N -0.59 -6.10 10.45 -13.61 -0.14 -6.24 16 25 C 0.51 5.15 7.87 -154.65 -1.22 3.93 16 26 N -0.82 -5.23 9.05 31.37 0.28 -4.95 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 29 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 33 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 34 H 0.14 0.29 8.13 -51.93 -0.42 -0.13 16 35 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.23 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.41 1.79 8.95 -40.82 -0.37 1.42 16 39 H 0.42 2.17 8.85 -40.82 -0.36 1.81 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -37.87 362.27 -10.80 -48.67 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.53 Total: 0.75 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -4.59 Total: 0.39 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.37 Total: -52.77 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.70 Total: -12.01 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -2.09 Total: -6.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.87 -10.80 -48.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805484113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.756 kcal (2) G-P(sol) polarization free energy of solvation -37.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds