Wall clock time and date at job start Tue Mar 31 2020 19:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86797 * 119.99879 * 2 1 4 4 H 1.48508 * 109.47249 * 269.99895 * 3 2 1 5 5 H 1.48505 * 109.47255 * 30.00088 * 3 2 1 6 6 H 1.48504 * 109.47245 * 150.00225 * 3 2 1 7 7 C 1.38800 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99811 * 0.02562 * 7 2 1 9 9 S 1.76195 * 120.00065 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99839 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47025 * 179.97438 * 11 10 9 13 13 O 1.45195 * 109.46986 * 179.97438 * 12 11 10 14 14 C 1.34238 * 117.00118 * 179.97438 * 13 12 11 15 15 O 1.20825 * 119.99345 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00360 * 179.97438 * 14 13 12 17 17 N 1.46492 * 109.47426 * 180.02562 * 16 14 13 18 18 C 1.36319 * 126.28134 * 265.00280 * 17 16 14 19 19 N 1.30139 * 109.98121 * 179.97438 * 18 17 16 20 20 C 1.35474 * 109.43978 * 359.97438 * 19 18 17 21 21 C 1.37203 * 126.28024 * 84.99804 * 17 16 14 22 22 N 1.32892 * 134.91178 * 0.02562 * 21 17 16 23 23 C 1.31651 * 120.63683 * 179.97438 * 22 21 17 24 24 N 1.32037 * 122.46350 * 0.02562 * 23 22 21 25 25 C 1.32914 * 121.19189 * 359.97438 * 24 23 22 26 26 N 1.38395 * 120.76956 * 179.73041 * 25 24 23 27 27 H 0.96999 * 120.00108 * 0.02562 * 1 2 3 28 28 H 1.08990 * 109.47058 * 60.00250 * 10 9 7 29 29 H 1.09008 * 109.46732 * 299.99926 * 10 9 7 30 30 H 1.08999 * 109.47692 * 59.99447 * 11 10 9 31 31 H 1.09001 * 109.47012 * 299.99987 * 11 10 9 32 32 H 1.09002 * 109.47077 * 60.00035 * 12 11 10 33 33 H 1.09000 * 109.46810 * 299.99829 * 12 11 10 34 34 H 1.09007 * 109.46939 * 60.00173 * 16 14 13 35 35 H 1.09001 * 109.47107 * 300.00698 * 16 14 13 36 36 H 1.08003 * 125.01353 * 0.03470 * 18 17 16 37 37 H 1.07996 * 118.76536 * 179.97438 * 23 22 21 38 38 H 0.97001 * 120.00101 * 0.02562 * 26 25 24 39 39 H 0.97001 * 119.99361 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7723 -1.2020 -0.0001 10 6 4.0866 -2.9845 0.0001 11 6 5.5958 -3.2362 0.0002 12 6 5.8615 -4.7430 0.0011 13 8 7.2936 -4.9819 0.0006 14 6 7.6980 -6.2619 0.0018 15 8 6.8821 -7.1531 0.0028 16 6 9.1694 -6.5873 0.0008 17 7 9.3480 -8.0413 0.0018 18 6 9.5423 -8.8294 1.0970 19 7 9.6622 -10.0734 0.7341 20 6 9.5521 -10.1626 -0.6132 21 6 9.3503 -8.8598 -1.0993 22 7 9.2111 -8.6728 -2.4077 23 6 9.2623 -9.6914 -3.2401 24 7 9.4507 -10.9325 -2.8308 25 6 9.6001 -11.2167 -1.5410 26 7 9.7915 -12.5215 -1.1212 27 1 -0.4850 0.8400 -0.0004 28 1 3.6434 -3.4317 -0.8895 29 1 3.6440 -3.4313 0.8905 30 1 6.0387 -2.7890 0.8901 31 1 6.0387 -2.7893 -0.8898 32 1 5.4185 -5.1906 -0.8886 33 1 5.4186 -5.1895 0.8914 34 1 9.6360 -6.1630 0.8899 35 1 9.6343 -6.1651 -0.8901 36 1 9.5889 -8.4740 2.1158 37 1 9.1451 -9.5049 -4.2974 38 1 9.8182 -13.2412 -1.7710 39 1 9.8997 -12.7161 -0.1771 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805484113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:27 Heat of formation + Delta-G solvation = -12.031630 kcal Electronic energy + Delta-G solvation = -24814.238957 eV Core-core repulsion = 20883.331447 eV Total energy + Delta-G solvation = -3930.907510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.63781 -41.63553 -40.26249 -38.03216 -36.78968 -35.15442 -34.86798 -34.69194 -33.03760 -30.32980 -29.90040 -28.11567 -27.43267 -25.27607 -24.71657 -23.20574 -22.66057 -21.67078 -19.75042 -19.62734 -19.48597 -19.05835 -18.11275 -17.87545 -17.64149 -17.17485 -17.10328 -16.72606 -16.19645 -16.03371 -15.78616 -15.33120 -15.01782 -14.97007 -14.77607 -14.44481 -14.23128 -13.97646 -13.51036 -13.37619 -13.19038 -13.05096 -12.65495 -12.64697 -12.45278 -12.31960 -11.96416 -11.75122 -11.58551 -11.51349 -11.17427 -11.02160 -10.62238 -10.43517 -10.18457 -9.01566 -8.98528 -8.52910 -6.25401 -0.20406 0.22910 0.87758 0.95918 1.11244 1.33090 1.45093 1.50218 1.68383 1.90935 2.24188 2.28254 2.64384 2.85034 2.85173 2.95697 3.10475 3.34921 3.42381 3.75663 3.80862 3.85776 3.90961 4.06602 4.10099 4.12567 4.24694 4.44187 4.61644 4.62933 4.80622 4.97187 5.04683 5.31934 5.34355 5.63291 5.68065 5.83105 6.09088 6.10751 6.48782 6.56717 6.67061 6.90407 7.25717 8.60150 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.029957 B = 0.001710 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.438622 B =16373.673779 C =16610.959150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.225 1.225 7 C -0.529 4.529 8 H 0.049 0.951 9 S -0.201 6.201 10 C -0.076 4.076 11 C -0.086 4.086 12 C 0.081 3.919 13 O -0.344 6.344 14 C 0.446 3.554 15 O -0.537 6.537 16 C 0.129 3.871 17 N -0.467 5.467 18 C 0.271 3.729 19 N -0.484 5.484 20 C -0.130 4.130 21 C 0.286 3.714 22 N -0.579 5.579 23 C 0.357 3.643 24 N -0.603 5.603 25 C 0.493 3.507 26 N -0.802 5.802 27 H 0.277 0.723 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.199 0.801 35 H 0.153 0.847 36 H 0.271 0.729 37 H 0.233 0.767 38 H 0.419 0.581 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.170 -19.939 0.898 34.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.148 1.148 7 C -0.676 4.676 8 H 0.068 0.932 9 S 0.027 5.973 10 C -0.225 4.225 11 C -0.125 4.125 12 C 0.006 3.994 13 O -0.260 6.260 14 C 0.289 3.711 15 O -0.426 6.426 16 C 0.006 3.994 17 N -0.161 5.161 18 C -0.015 4.015 19 N -0.202 5.202 20 C -0.256 4.256 21 C 0.046 3.954 22 N -0.304 5.304 23 C 0.066 3.934 24 N -0.333 5.333 25 C 0.238 3.762 26 N -0.346 5.346 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.216 0.784 35 H 0.171 0.829 36 H 0.287 0.713 37 H 0.249 0.751 38 H 0.252 0.748 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 28.440 -19.562 0.541 34.522 hybrid contribution -1.970 -0.384 0.221 2.019 sum 26.470 -19.946 0.763 33.153 Atomic orbital electron populations 1.70044 1.07769 1.29193 1.48996 1.25824 0.95445 1.02934 0.92618 0.85691 0.80847 0.78371 0.80291 1.18568 1.18796 1.14786 1.22372 0.90278 0.96298 1.58676 0.93236 1.83753 1.07267 1.08703 1.97586 1.22987 0.99143 0.96295 1.04063 1.21149 0.92668 0.93219 1.05424 1.23008 0.76753 0.96909 1.02752 1.86429 1.28062 1.28084 1.83378 1.24532 0.93842 0.80812 0.71940 1.90755 1.56645 1.48958 1.46200 1.21624 0.88339 0.77026 1.12384 1.44848 1.58464 1.07754 1.04994 1.26438 0.96769 0.84202 0.94065 1.70194 1.21433 1.19482 1.09100 1.19881 1.18079 0.94472 0.93171 1.19055 0.98116 0.89363 0.88891 1.67308 1.25051 1.37775 1.00288 1.25112 0.87213 0.80681 1.00406 1.68116 1.27301 1.24558 1.13339 1.18065 0.85218 0.85785 0.87098 1.42169 1.76212 1.03347 1.12839 0.91368 0.91462 0.91073 0.88950 0.89464 0.91690 0.90729 0.78422 0.82918 0.71312 0.75102 0.74827 0.74312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.51 13.97 21.65 0.30 -56.21 16 2 C 0.04 2.13 5.50 84.86 0.47 2.59 16 3 Si 0.93 43.15 27.74 68.60 1.90 45.05 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.22 -9.90 6.74 99.48 0.67 -9.23 16 7 C -0.53 -30.84 10.04 67.95 0.68 -30.15 16 8 H 0.05 3.16 8.03 -2.91 -0.02 3.14 16 9 S -0.20 -9.30 19.41 -56.49 -1.10 -10.40 16 10 C -0.08 -2.77 5.67 71.98 0.41 -2.36 16 11 C -0.09 -2.29 5.60 30.59 0.17 -2.12 16 12 C 0.08 1.97 5.47 71.98 0.39 2.36 16 13 O -0.34 -6.97 10.22 -51.50 -0.53 -7.50 16 14 C 0.45 8.71 8.03 71.23 0.57 9.28 16 15 O -0.54 -15.44 16.18 21.97 0.36 -15.09 16 16 C 0.13 1.24 6.75 85.63 0.58 1.82 16 17 N -0.47 -7.40 2.28 -530.14 -1.21 -8.60 16 18 C 0.27 3.50 12.51 179.96 2.25 5.75 16 19 N -0.48 -9.23 11.28 -191.40 -2.16 -11.39 16 20 C -0.13 -2.90 7.17 39.69 0.28 -2.62 16 21 C 0.29 6.51 8.05 133.86 1.08 7.58 16 22 N -0.58 -13.45 10.47 -197.89 -2.07 -15.52 16 23 C 0.36 7.00 12.25 180.85 2.22 9.22 16 24 N -0.60 -12.39 10.45 -196.97 -2.06 -14.44 16 25 C 0.49 9.97 7.87 133.45 1.05 11.02 16 26 N -0.80 -9.95 9.05 -54.65 -0.49 -10.45 16 27 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 28 H 0.07 2.50 8.14 -2.40 -0.02 2.48 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.20 -0.29 8.13 -2.38 -0.02 -0.31 16 35 H 0.15 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.27 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.23 2.71 8.06 -2.91 -0.02 2.68 16 38 H 0.42 3.44 8.95 -92.71 -0.83 2.61 16 39 H 0.42 4.20 8.85 -92.71 -0.82 3.38 16 Total: -1.00 -85.13 362.27 2.54 -82.59 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -0.56 Total: 9.58 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 10.15 Total: 12.38 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -7.69 Total: -116.62 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.17 Total: -22.58 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.90 Total: 45.05 kcal Atomic # 16 Polarization: -9.30 SS G_CDS: -1.10 Total: -10.40 kcal Total: -85.13 2.54 -82.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805484113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.559 kcal (2) G-P(sol) polarization free energy of solvation -85.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds