Wall clock time and date at job start Tue Mar 31 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99652 * 2 1 4 4 C 1.53008 * 109.47023 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.46656 * 65.00173 * 4 3 2 6 6 C 1.46499 * 120.00585 * 84.20455 * 5 4 3 7 7 C 1.50696 * 109.47475 * 95.78187 * 6 5 4 8 8 H 1.08004 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00591 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00560 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99510 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47055 * 90.00154 * 11 9 7 13 13 H 1.48497 * 109.46946 * 209.99985 * 11 9 7 14 14 H 1.48500 * 109.47126 * 329.99653 * 11 9 7 15 15 C 1.34783 * 119.99739 * 264.19722 * 5 4 3 16 16 O 1.21708 * 120.00331 * 5.41038 * 15 5 4 17 17 C 1.46522 * 119.99770 * 185.40776 * 15 5 4 18 18 C 1.36631 * 125.17837 * 186.97907 * 17 15 5 19 19 C 1.36860 * 114.71341 * 179.82732 * 18 17 15 20 20 C 1.36376 * 114.78439 * 0.45943 * 19 18 17 21 21 C 1.47894 * 125.14567 * 179.73085 * 20 19 18 22 22 N 1.34212 * 126.70205 * 359.68157 * 21 20 19 23 23 N 1.28980 * 107.25208 * 179.87606 * 22 21 20 24 24 N 1.28716 * 108.99656 * 0.39729 * 23 22 21 25 25 H 0.97006 * 125.32083 * 179.71122 * 24 23 22 26 26 N 1.28866 * 109.36755 * 359.75020 * 24 23 22 27 27 S 1.75838 * 109.71081 * 359.74824 * 20 19 18 28 28 H 1.09000 * 109.46827 * 59.99822 * 1 2 3 29 29 H 1.08995 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46888 * 299.99921 * 1 2 3 31 31 H 1.08999 * 109.47393 * 60.00044 * 3 2 1 32 32 H 1.08998 * 109.47272 * 299.99636 * 3 2 1 33 33 H 1.08996 * 109.46875 * 305.00127 * 4 3 2 34 34 H 1.08998 * 109.47262 * 184.99964 * 4 3 2 35 35 H 1.08996 * 109.47620 * 215.78513 * 6 5 4 36 36 H 1.09009 * 109.46649 * 335.78645 * 6 5 4 37 37 H 0.97003 * 120.00271 * 180.02562 * 10 9 7 38 38 H 1.07995 * 122.64006 * 359.97438 * 18 17 15 39 39 H 1.08001 * 122.60549 * 180.20790 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1659 1.3856 -2.4490 7 6 5.6174 1.7727 -2.5686 8 1 6.3280 1.4398 -1.8265 9 6 6.0384 2.5519 -3.6253 10 7 7.3051 2.8894 -3.7299 11 14 4.8092 3.1283 -4.9085 12 1 4.2383 4.4354 -4.4950 13 1 5.4942 3.2792 -6.2174 14 1 3.7182 2.1286 -5.0331 15 6 4.2085 -0.7627 -1.2999 16 8 3.9578 -1.4604 -0.3347 17 6 4.7623 -1.3651 -2.5154 18 6 4.9126 -2.7058 -2.7313 19 6 5.4506 -3.0329 -3.9465 20 6 5.7586 -1.9679 -4.7407 21 6 6.3536 -2.0572 -6.0917 22 7 6.6894 -3.1789 -6.7477 23 7 7.1710 -2.8241 -7.8904 24 7 7.1575 -1.5395 -7.9701 25 1 7.4708 -1.0213 -8.7280 26 7 6.6637 -1.0492 -6.8856 27 16 5.3417 -0.4723 -3.9152 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8427 34 1 3.9785 2.1766 0.0902 35 1 3.8677 0.8173 -3.3300 36 1 3.5550 2.2852 -2.3730 37 1 7.6012 3.4379 -4.4731 38 1 4.6269 -3.4490 -2.0016 39 1 5.6219 -4.0548 -4.2510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821689248.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:14 Heat of formation + Delta-G solvation = 68.123510 kcal Electronic energy + Delta-G solvation = -27002.245574 eV Core-core repulsion = 23074.813852 eV Total energy + Delta-G solvation = -3927.431722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.44608 -40.84514 -38.78347 -38.16970 -36.78172 -35.33337 -34.73758 -34.39282 -32.05560 -30.24486 -29.49634 -27.31983 -26.46418 -25.59528 -24.68668 -24.03502 -23.43855 -21.29201 -20.62325 -19.30881 -19.11888 -18.75002 -18.15877 -17.54741 -17.38323 -16.68846 -16.68040 -16.36002 -15.96006 -15.73773 -15.31039 -15.06311 -14.81399 -14.34973 -14.33269 -13.94461 -13.89000 -13.50618 -13.41456 -13.23622 -13.07918 -12.89309 -12.62013 -12.44150 -12.41017 -12.20780 -12.02836 -11.93617 -11.87535 -11.78472 -11.18202 -10.95695 -10.76326 -10.50573 -9.62202 -9.35488 -9.18919 -8.39319 -6.36803 -0.72346 0.09666 0.70417 0.93134 1.14722 1.39440 1.40863 1.42396 1.45926 1.80247 2.19091 2.26748 2.38394 2.74356 2.98269 2.99877 3.32403 3.74518 4.17478 4.20460 4.27303 4.36433 4.40526 4.47835 4.52677 4.56722 4.58784 4.65072 4.68500 4.73988 4.87165 4.97720 5.11505 5.24278 5.28789 5.51945 5.59009 5.65840 6.08882 6.37026 6.49934 6.61441 7.08845 7.11645 7.29392 8.73689 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011845 B = 0.004906 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.218646 B = 5705.501721 C = 7238.236221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.047 3.953 4 C 0.115 3.885 5 N -0.591 5.591 6 C 0.196 3.804 7 C -0.524 4.524 8 H 0.050 0.950 9 C 0.059 3.941 10 N -0.904 5.904 11 Si 0.889 3.111 12 H -0.253 1.253 13 H -0.276 1.276 14 H -0.234 1.234 15 C 0.588 3.412 16 O -0.564 6.564 17 C -0.286 4.286 18 C -0.077 4.077 19 C -0.099 4.099 20 C -0.226 4.226 21 C 0.248 3.752 22 N -0.284 5.284 23 N -0.050 5.050 24 N -0.201 5.201 25 H 0.494 0.506 26 N -0.310 5.310 27 S 0.362 5.638 28 H 0.044 0.956 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.275 0.725 38 H 0.157 0.843 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -1.985 -4.169 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C -0.030 4.030 4 C -0.007 4.007 5 N -0.321 5.321 6 C 0.072 3.928 7 C -0.570 4.570 8 H 0.068 0.932 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.710 3.290 12 H -0.177 1.177 13 H -0.201 1.201 14 H -0.157 1.157 15 C 0.377 3.623 16 O -0.446 6.446 17 C -0.409 4.409 18 C -0.111 4.111 19 C -0.134 4.134 20 C -0.347 4.347 21 C -0.032 4.032 22 N -0.158 5.158 23 N -0.045 5.045 24 N -0.051 5.051 25 H 0.353 0.647 26 N -0.163 5.163 27 S 0.642 5.358 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.174 0.826 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.749 -1.216 -4.777 9.184 hybrid contribution -0.048 -0.237 -0.317 0.399 sum -7.796 -1.454 -5.094 9.426 Atomic orbital electron populations 1.22855 0.80258 1.03104 1.00671 1.88070 1.20797 1.28333 1.95497 1.23047 0.93228 0.85003 1.01717 1.21647 0.93348 0.99711 0.86000 1.47668 1.65401 1.06474 1.12555 1.20002 0.96713 0.92385 0.83712 1.21382 0.93153 1.31849 1.10585 0.93162 1.25410 0.96321 0.94265 0.98658 1.69966 1.16587 1.35587 1.31853 0.86527 0.81217 0.81449 0.79781 1.17706 1.20059 1.15653 1.17075 0.77110 0.82176 0.85950 1.90710 1.54551 1.61751 1.37607 1.24913 1.14542 0.99240 1.02205 1.20374 0.99263 0.93958 0.97503 1.20269 1.00820 0.99649 0.92656 1.23931 1.11281 1.05805 0.93704 1.22625 1.00168 0.84779 0.95620 1.76112 1.15118 1.24982 0.99561 1.78737 1.15201 0.96265 1.14293 1.47683 1.38348 1.04786 1.14330 0.64712 1.75135 1.17812 1.26509 0.96844 1.87210 1.49197 0.96998 1.02367 0.93720 0.89706 0.92554 0.89743 0.92590 0.90564 0.87180 0.94146 0.91584 0.91552 0.82557 0.82303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 11.01 113.37 1.25 1.87 16 2 O -0.41 -13.17 9.97 -148.88 -1.48 -14.66 16 3 C 0.05 1.30 6.28 71.98 0.45 1.75 16 4 C 0.12 3.81 5.81 86.38 0.50 4.31 16 5 N -0.59 -23.62 2.43 -831.05 -2.02 -25.63 16 6 C 0.20 7.93 3.82 85.63 0.33 8.26 16 7 C -0.52 -24.92 7.01 25.60 0.18 -24.74 16 8 H 0.05 2.79 8.06 -2.91 -0.02 2.76 16 9 C 0.06 2.86 4.87 84.65 0.41 3.27 16 10 N -0.90 -47.85 13.96 21.45 0.30 -47.55 16 11 Si 0.89 35.39 26.91 68.60 1.85 37.24 16 12 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 13 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.23 -8.54 6.54 99.48 0.65 -7.89 16 15 C 0.59 25.63 7.37 86.40 0.64 26.27 16 16 O -0.56 -26.46 15.90 -4.27 -0.07 -26.53 16 17 C -0.29 -11.84 6.17 24.05 0.15 -11.69 16 18 C -0.08 -2.80 9.88 21.57 0.21 -2.58 16 19 C -0.10 -3.41 10.09 21.51 0.22 -3.19 16 20 C -0.23 -8.53 6.48 24.39 0.16 -8.37 16 21 C 0.25 8.88 8.16 137.10 1.12 9.99 16 22 N -0.28 -9.44 12.51 -52.42 -0.66 -10.09 16 23 N -0.05 -1.38 13.46 37.02 0.50 -0.88 16 24 N -0.20 -4.83 7.90 37.02 0.29 -4.54 16 25 H 0.49 6.48 8.96 -347.50 -3.12 3.37 16 26 N -0.31 -10.24 12.41 -52.37 -0.65 -10.89 16 27 S 0.36 14.96 15.03 -56.49 -0.85 14.11 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.71 7.33 -2.39 -0.02 2.69 16 34 H 0.11 3.23 8.11 -2.39 -0.02 3.21 16 35 H 0.04 1.68 4.11 -18.50 -0.08 1.60 16 36 H 0.07 2.40 7.45 -2.38 -0.02 2.38 16 37 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 38 H 0.16 5.21 8.04 -2.91 -0.02 5.19 16 39 H 0.16 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -66.45 347.33 0.70 -65.74 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: -2.12 Total: 18.52 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.61 Total: 5.15 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -2.23 Total: -99.58 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.55 Total: -41.19 kcal Atomic # 14 Polarization: 35.39 SS G_CDS: 1.85 Total: 37.24 kcal Atomic # 16 Polarization: 14.96 SS G_CDS: -0.85 Total: 14.11 kcal Total: -66.45 0.70 -65.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821689248.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.866 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds