Wall clock time and date at job start Tue Mar 31 2020 20:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47524 * 2 1 4 4 C 1.50705 * 109.47075 * 239.99148 * 2 1 3 5 5 H 1.07996 * 120.00045 * 240.00481 * 4 2 1 6 6 C 1.37875 * 119.99756 * 60.00505 * 4 2 1 7 7 N 1.31521 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99978 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46966 * 90.00169 * 8 6 4 10 10 H 1.48498 * 109.47101 * 209.99862 * 8 6 4 11 11 H 1.48497 * 109.47486 * 329.99914 * 8 6 4 12 12 N 1.46502 * 109.46860 * 119.99949 * 2 1 3 13 13 C 1.46498 * 120.00449 * 55.31157 * 12 2 1 14 14 S 1.65604 * 119.99739 * 235.31445 * 12 2 1 15 15 O 1.42101 * 106.40367 * 208.27185 * 14 12 2 16 16 O 1.42101 * 106.40207 * 341.19472 * 14 12 2 17 17 C 1.76202 * 107.21673 * 94.73240 * 14 12 2 18 18 C 1.38053 * 120.05864 * 13.12787 * 17 14 12 19 19 C 1.38301 * 120.11224 * 179.76986 * 18 17 14 20 20 C 1.38332 * 120.23727 * 0.50829 * 19 18 17 21 21 C 1.38012 * 120.11858 * 359.74749 * 20 19 18 22 22 C 1.39280 * 120.05651 * 193.40363 * 17 14 12 23 23 C 1.48464 * 120.12002 * 359.95969 * 22 17 14 24 24 N 1.34046 * 126.67092 * 353.23414 * 23 22 17 25 25 N 1.28988 * 107.26733 * 179.87157 * 24 23 22 26 26 N 1.28736 * 108.94211 * 0.40561 * 25 24 23 27 27 H 0.96994 * 125.33842 * 179.76392 * 26 25 24 28 28 N 1.28869 * 109.31707 * 359.74230 * 26 25 24 29 29 H 1.09000 * 109.47210 * 60.00447 * 1 2 3 30 30 H 1.09005 * 109.47460 * 300.00642 * 1 2 3 31 31 H 1.09005 * 109.47659 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99676 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46800 * 89.99908 * 13 12 2 34 34 H 1.08997 * 109.47386 * 210.00282 * 13 12 2 35 35 H 1.09000 * 109.47263 * 330.00450 * 13 12 2 36 36 H 1.07995 * 119.94443 * 0.02562 * 18 17 14 37 37 H 1.08000 * 119.87523 * 180.25623 * 19 18 17 38 38 H 1.08005 * 119.94032 * 179.76533 * 20 19 18 39 39 H 1.07999 * 120.05834 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3225 -1.1200 -4.0078 9 1 1.3447 -2.1620 -4.4121 10 1 2.4873 -0.1408 -5.1119 11 1 3.6308 -1.7571 -3.7118 12 7 2.0182 -0.6906 1.1962 13 6 1.5817 -2.0597 1.4812 14 16 3.0637 0.0764 2.2263 15 8 3.8421 -0.9419 2.8398 16 8 3.6313 1.1534 1.4934 17 6 2.0954 0.8021 3.5071 18 6 0.7710 0.4436 3.6603 19 6 0.0113 1.0089 4.6682 20 6 0.5703 1.9436 5.5212 21 6 1.8918 2.3129 5.3736 22 6 2.6632 1.7426 4.3632 23 6 4.0855 2.1358 4.1999 24 7 4.9773 1.5856 3.3640 25 7 6.0923 2.2134 3.5264 26 7 5.9347 3.1189 4.4278 27 1 6.6232 3.7275 4.7381 28 7 4.7185 3.0900 4.8530 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7082 1.1606 -3.4845 33 1 2.2701 -2.7649 1.0155 34 1 1.5707 -2.2206 2.5592 35 1 0.5794 -2.2123 1.0808 36 1 0.3287 -0.2826 2.9945 37 1 -1.0233 0.7226 4.7872 38 1 -0.0285 2.3848 6.3043 39 1 2.3271 3.0430 6.0398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824385694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:02 Heat of formation + Delta-G solvation = 104.646779 kcal Electronic energy + Delta-G solvation = -28000.031664 eV Core-core repulsion = 24074.183709 eV Total energy + Delta-G solvation = -3925.847955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.50330 -39.26008 -36.32989 -36.21603 -35.08049 -34.35007 -33.68933 -32.55478 -31.33584 -30.65342 -29.03436 -25.70089 -25.15941 -24.86463 -24.65247 -22.87631 -21.84684 -20.57239 -19.39424 -18.31639 -17.47158 -17.17170 -16.73910 -16.44029 -16.14383 -15.19618 -15.08025 -14.74240 -14.41967 -14.22321 -13.92002 -13.52831 -13.14769 -13.01564 -12.75404 -12.54267 -12.15686 -11.91589 -11.69883 -11.64200 -11.43281 -11.22902 -11.19715 -11.11387 -11.03796 -11.02603 -10.78393 -10.64845 -10.38995 -10.27864 -10.19733 -9.89246 -9.37028 -9.22206 -8.87802 -8.39120 -7.93675 -6.01100 -4.07107 0.42164 0.98137 1.13658 1.19362 2.16718 2.28098 3.33537 3.40377 3.41194 3.46226 3.51195 3.81144 4.04992 4.43168 4.46986 4.78453 4.80786 5.00562 5.21132 5.24937 5.30481 5.35049 5.46028 5.54204 5.62751 5.74970 5.98805 6.06526 6.14819 6.18750 6.32485 6.40685 6.64879 6.66478 6.78250 6.82183 7.05525 7.49100 7.68564 7.84949 8.07549 8.09689 8.32910 8.95328 9.58369 11.04642 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.004691 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.660063 B = 5967.588242 C = 6966.336871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.063 0.937 4 C -0.517 4.517 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.987 5.987 13 C 0.099 3.901 14 S 2.692 3.308 15 O -0.960 6.960 16 O -0.930 6.930 17 C -0.635 4.635 18 C -0.031 4.031 19 C -0.119 4.119 20 C -0.081 4.081 21 C -0.100 4.100 22 C 0.076 3.924 23 C 0.191 3.809 24 N -0.249 5.249 25 N -0.027 5.027 26 N -0.229 5.229 27 H 0.476 0.524 28 N -0.283 5.283 29 H 0.095 0.905 30 H 0.011 0.989 31 H 0.036 0.964 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.147 0.853 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 3.644 17.851 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.162 3.838 3 H 0.081 0.919 4 C -0.556 4.556 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.828 5.828 13 C -0.047 4.047 14 S 2.777 3.223 15 O -0.950 6.950 16 O -0.919 6.919 17 C -0.717 4.717 18 C -0.049 4.049 19 C -0.138 4.138 20 C -0.099 4.099 21 C -0.121 4.121 22 C 0.071 3.929 23 C -0.089 4.089 24 N -0.123 5.123 25 N -0.023 5.023 26 N -0.074 5.074 27 H 0.331 0.669 28 N -0.135 5.135 29 H 0.113 0.887 30 H 0.030 0.970 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.087 3.785 17.408 17.848 hybrid contribution -0.399 0.314 -0.143 0.528 sum 0.688 4.100 17.265 17.758 Atomic orbital electron populations 1.22170 0.98257 0.99819 1.00834 1.18805 0.91336 0.93337 0.80273 0.91929 1.21354 1.31440 1.12905 0.89949 0.91840 1.24897 0.95023 0.94993 0.98956 1.69864 1.36745 1.22752 1.23694 0.86506 0.79377 0.79268 0.82353 1.20678 1.21192 1.19745 1.57622 1.66583 1.22412 1.36215 1.21298 1.01573 0.83230 0.98585 1.02449 0.73158 0.73944 0.72723 1.93510 1.65687 1.57834 1.77967 1.93574 1.73565 1.55187 1.69528 1.31776 1.09841 1.10338 1.19794 1.21025 0.91058 0.96813 0.96027 1.21459 1.00452 0.96803 0.95082 1.21298 0.94377 0.95884 0.98343 1.21208 0.94181 0.99613 0.97082 1.16552 0.85429 0.95239 0.95654 1.23796 0.97017 0.93700 0.94359 1.76045 0.95967 1.22165 1.18120 1.78941 1.18364 0.99120 1.05843 1.47735 1.08793 1.25971 1.24933 0.66930 1.74752 0.93439 1.21446 1.23870 0.88672 0.96986 0.94484 0.92770 0.92659 0.93157 0.90613 0.83575 0.84604 0.84629 0.84277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.85 37.15 0.33 -3.03 16 2 C 0.27 6.55 2.61 -69.08 -0.18 6.37 16 3 H 0.06 1.73 6.87 -51.93 -0.36 1.38 16 4 C -0.52 -14.08 8.44 -34.44 -0.29 -14.37 16 5 H 0.06 1.73 7.79 -52.49 -0.41 1.32 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.99 -21.08 2.24 -115.86 -0.26 -21.34 16 13 C 0.10 1.75 8.89 59.85 0.53 2.28 16 14 S 2.69 58.75 3.98 -107.50 -0.43 58.32 16 15 O -0.96 -22.04 16.82 -57.17 -0.96 -23.00 16 16 O -0.93 -23.36 13.86 -57.17 -0.79 -24.15 16 17 C -0.63 -11.34 5.85 -39.26 -0.23 -11.57 16 18 C -0.03 -0.45 9.56 -39.63 -0.38 -0.83 16 19 C -0.12 -1.33 10.04 -39.52 -0.40 -1.73 16 20 C -0.08 -0.84 10.03 -39.63 -0.40 -1.23 16 21 C -0.10 -1.25 9.70 -39.26 -0.38 -1.63 16 22 C 0.08 1.26 5.87 -104.89 -0.62 0.65 16 23 C 0.19 3.38 7.61 -156.30 -1.19 2.19 16 24 N -0.25 -5.04 7.82 32.16 0.25 -4.78 16 25 N -0.03 -0.44 13.47 60.35 0.81 0.37 16 26 N -0.23 -2.67 7.90 60.35 0.48 -2.20 16 27 H 0.48 2.65 8.96 -340.37 -3.05 -0.40 16 28 N -0.28 -3.94 12.10 32.17 0.39 -3.55 16 29 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 30 H 0.01 0.22 7.97 -51.93 -0.41 -0.20 16 31 H 0.04 0.75 6.53 -51.93 -0.34 0.41 16 32 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.73 7.82 -51.93 -0.41 0.33 16 35 H 0.08 1.22 6.19 -51.93 -0.32 0.90 16 36 H 0.15 1.97 6.28 -52.49 -0.33 1.64 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.14 0.89 8.06 -52.48 -0.42 0.46 16 39 H 0.14 1.39 7.90 -52.49 -0.41 0.98 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -36.52 338.08 -9.86 -46.38 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.76 Total: -1.88 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.29 Total: -21.26 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 2.30 Total: -55.87 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -1.75 Total: -47.15 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 58.75 SS G_CDS: -0.43 Total: 58.32 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.52 -9.86 -46.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.029 kcal (2) G-P(sol) polarization free energy of solvation -36.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds