Wall clock time and date at job start Tue Mar 31 2020 20:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47524 * 2 1 4 4 C 1.50705 * 109.47075 * 239.99148 * 2 1 3 5 5 H 1.07996 * 120.00045 * 240.00481 * 4 2 1 6 6 C 1.37875 * 119.99756 * 60.00505 * 4 2 1 7 7 N 1.31521 * 119.99757 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99978 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46966 * 90.00169 * 8 6 4 10 10 H 1.48498 * 109.47101 * 209.99862 * 8 6 4 11 11 H 1.48497 * 109.47486 * 329.99914 * 8 6 4 12 12 N 1.46502 * 109.46860 * 119.99949 * 2 1 3 13 13 C 1.46498 * 120.00449 * 55.31157 * 12 2 1 14 14 S 1.65604 * 119.99739 * 235.31445 * 12 2 1 15 15 O 1.42101 * 106.40367 * 208.27185 * 14 12 2 16 16 O 1.42101 * 106.40207 * 341.19472 * 14 12 2 17 17 C 1.76202 * 107.21673 * 94.73240 * 14 12 2 18 18 C 1.38053 * 120.05864 * 13.12787 * 17 14 12 19 19 C 1.38301 * 120.11224 * 179.76986 * 18 17 14 20 20 C 1.38332 * 120.23727 * 0.50829 * 19 18 17 21 21 C 1.38012 * 120.11858 * 359.74749 * 20 19 18 22 22 C 1.39280 * 120.05651 * 193.40363 * 17 14 12 23 23 C 1.48464 * 120.12002 * 359.95969 * 22 17 14 24 24 N 1.34046 * 126.67092 * 353.23414 * 23 22 17 25 25 N 1.28988 * 107.26733 * 179.87157 * 24 23 22 26 26 N 1.28736 * 108.94211 * 0.40561 * 25 24 23 27 27 H 0.96994 * 125.33842 * 179.76392 * 26 25 24 28 28 N 1.28869 * 109.31707 * 359.74230 * 26 25 24 29 29 H 1.09000 * 109.47210 * 60.00447 * 1 2 3 30 30 H 1.09005 * 109.47460 * 300.00642 * 1 2 3 31 31 H 1.09005 * 109.47659 * 180.02562 * 1 2 3 32 32 H 0.97006 * 119.99676 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.46800 * 89.99908 * 13 12 2 34 34 H 1.08997 * 109.47386 * 210.00282 * 13 12 2 35 35 H 1.09000 * 109.47263 * 330.00450 * 13 12 2 36 36 H 1.07995 * 119.94443 * 0.02562 * 18 17 14 37 37 H 1.08000 * 119.87523 * 180.25623 * 19 18 17 38 38 H 1.08005 * 119.94032 * 179.76533 * 20 19 18 39 39 H 1.07999 * 120.05834 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 1 2.6531 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6034 8 14 2.3225 -1.1200 -4.0078 9 1 1.3447 -2.1620 -4.4121 10 1 2.4873 -0.1408 -5.1119 11 1 3.6308 -1.7571 -3.7118 12 7 2.0182 -0.6906 1.1962 13 6 1.5817 -2.0597 1.4812 14 16 3.0637 0.0764 2.2263 15 8 3.8421 -0.9419 2.8398 16 8 3.6313 1.1534 1.4934 17 6 2.0954 0.8021 3.5071 18 6 0.7710 0.4436 3.6603 19 6 0.0113 1.0089 4.6682 20 6 0.5703 1.9436 5.5212 21 6 1.8918 2.3129 5.3736 22 6 2.6632 1.7426 4.3632 23 6 4.0855 2.1358 4.1999 24 7 4.9773 1.5856 3.3640 25 7 6.0923 2.2134 3.5264 26 7 5.9347 3.1189 4.4278 27 1 6.6232 3.7275 4.7381 28 7 4.7185 3.0900 4.8530 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.7082 1.1606 -3.4845 33 1 2.2701 -2.7649 1.0155 34 1 1.5707 -2.2206 2.5592 35 1 0.5794 -2.2123 1.0808 36 1 0.3287 -0.2826 2.9945 37 1 -1.0233 0.7226 4.7872 38 1 -0.0285 2.3848 6.3043 39 1 2.3271 3.0430 6.0398 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824385694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:01 Heat of formation + Delta-G solvation = 76.736711 kcal Electronic energy + Delta-G solvation = -28001.241936 eV Core-core repulsion = 24074.183709 eV Total energy + Delta-G solvation = -3927.058226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.69060 -40.26963 -38.08137 -37.93268 -36.72243 -35.63799 -34.86572 -34.50517 -32.38284 -31.70884 -30.85992 -27.35391 -26.97768 -26.12413 -25.82033 -23.97149 -23.02098 -22.31536 -20.57455 -19.73927 -18.90673 -18.49416 -18.35473 -18.06059 -17.44618 -17.02481 -16.37212 -16.11754 -15.77679 -15.43411 -15.20841 -15.11458 -14.58483 -14.43446 -14.31781 -13.73213 -13.58951 -13.32264 -13.24110 -13.06945 -13.00450 -12.91388 -12.79018 -12.65078 -12.54495 -12.42190 -12.26676 -12.19322 -12.14227 -12.08630 -11.83033 -11.55199 -11.11942 -10.46960 -10.40973 -9.90040 -9.66392 -8.09271 -6.22472 -0.68137 -0.45484 -0.07501 0.06755 1.08925 1.26515 1.42586 1.45133 1.54992 2.07403 2.44522 2.48924 2.51012 2.87353 2.95782 3.18679 3.68521 3.82379 3.86957 4.04832 4.08149 4.20568 4.31180 4.33528 4.49631 4.67602 4.78955 4.87445 4.97528 5.04314 5.06604 5.18180 5.18660 5.20706 5.28062 5.49365 5.64449 5.76877 5.77762 5.91487 6.18420 6.33276 6.84445 6.86485 7.46028 8.94841 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.004691 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.660063 B = 5967.588242 C = 6966.336871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.022 0.978 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.953 3.047 9 H -0.265 1.265 10 H -0.283 1.283 11 H -0.278 1.278 12 N -0.993 5.993 13 C 0.091 3.909 14 S 2.695 3.305 15 O -0.989 6.989 16 O -0.980 6.980 17 C -0.657 4.657 18 C -0.043 4.043 19 C -0.107 4.107 20 C -0.060 4.060 21 C -0.095 4.095 22 C 0.044 3.956 23 C 0.170 3.830 24 N -0.308 5.308 25 N -0.047 5.047 26 N -0.190 5.190 27 H 0.500 0.500 28 N -0.262 5.262 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.264 0.736 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.152 0.848 37 H 0.180 0.820 38 H 0.189 0.811 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.726 4.162 20.515 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.040 0.960 4 C -0.577 4.577 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.054 4.054 14 S 2.788 3.212 15 O -0.979 6.979 16 O -0.970 6.970 17 C -0.747 4.747 18 C -0.062 4.062 19 C -0.127 4.127 20 C -0.077 4.077 21 C -0.116 4.116 22 C 0.039 3.961 23 C -0.110 4.110 24 N -0.180 5.180 25 N -0.042 5.042 26 N -0.042 5.042 27 H 0.360 0.640 28 N -0.115 5.115 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.169 0.831 37 H 0.198 0.802 38 H 0.206 0.794 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.255 4.259 20.026 20.512 hybrid contribution 0.341 0.287 -0.757 0.879 sum -0.913 4.546 19.269 19.819 Atomic orbital electron populations 1.21959 0.96020 1.00869 1.00930 1.18473 0.92858 0.91246 0.80721 0.96038 1.21659 1.31604 1.12894 0.91584 0.92882 1.25607 0.95248 0.95701 1.01522 1.69979 1.37380 1.23619 1.24294 0.85633 0.78805 0.78562 0.79117 1.18970 1.20888 1.20328 1.57416 1.66387 1.23809 1.35723 1.21559 1.02050 0.81113 1.00711 1.01681 0.73348 0.73122 0.73089 1.93449 1.67356 1.58868 1.78264 1.93497 1.75564 1.56405 1.71492 1.30947 1.11026 1.12903 1.19795 1.21297 0.89987 0.97420 0.97509 1.21986 1.01967 0.95557 0.93142 1.21956 0.93466 0.94025 0.98244 1.21623 0.94934 0.99236 0.95762 1.16908 0.85521 0.96338 0.97324 1.24230 0.97850 0.94379 0.94516 1.75995 0.97386 1.24356 1.20278 1.78832 1.17883 1.00280 1.07216 1.47812 1.08885 1.24663 1.22843 0.63963 1.74696 0.93628 1.20161 1.23044 0.91348 0.93993 0.92848 0.92636 0.93811 0.90071 0.88793 0.83053 0.80240 0.79408 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.12 8.85 71.98 0.64 -5.48 16 2 C 0.27 13.86 2.61 44.24 0.12 13.98 16 3 H 0.02 1.28 6.87 -2.39 -0.02 1.26 16 4 C -0.54 -30.32 8.44 25.60 0.22 -30.10 16 5 H 0.05 3.01 7.79 -2.91 -0.02 2.99 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.39 11.32 21.45 0.24 -52.15 16 8 Si 0.95 44.59 29.54 68.60 2.03 46.62 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 N -0.99 -43.74 2.24 -520.46 -1.17 -44.90 16 13 C 0.09 3.20 8.89 127.77 1.14 4.33 16 14 S 2.69 123.61 3.98 -56.49 -0.22 123.38 16 15 O -0.99 -48.01 16.82 -128.00 -2.15 -50.16 16 16 O -0.98 -53.07 13.86 -128.00 -1.77 -54.84 16 17 C -0.66 -23.46 5.85 22.48 0.13 -23.33 16 18 C -0.04 -1.17 9.56 22.24 0.21 -0.95 16 19 C -0.11 -1.87 10.04 22.31 0.22 -1.65 16 20 C -0.06 -0.89 10.03 22.24 0.22 -0.67 16 21 C -0.09 -2.04 9.70 22.48 0.22 -1.82 16 22 C 0.04 1.43 5.87 -20.04 -0.12 1.31 16 23 C 0.17 6.10 7.61 137.38 1.05 7.14 16 24 N -0.31 -13.08 7.82 -52.18 -0.41 -13.48 16 25 N -0.05 -1.60 13.47 37.02 0.50 -1.11 16 26 N -0.19 -4.36 7.90 37.02 0.29 -4.07 16 27 H 0.50 4.96 8.96 -347.54 -3.12 1.84 16 28 N -0.26 -7.08 12.10 -52.13 -0.63 -7.71 16 29 H 0.07 3.42 6.07 -2.39 -0.01 3.41 16 30 H 0.04 1.55 7.97 -2.38 -0.02 1.53 16 31 H 0.05 2.13 6.53 -2.38 -0.02 2.11 16 32 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 35 H 0.09 2.92 6.19 -2.39 -0.01 2.91 16 36 H 0.15 3.77 6.28 -2.91 -0.02 3.75 16 37 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.17 2.60 7.90 -2.91 -0.02 2.58 16 Total: -1.00 -86.71 338.08 -0.80 -87.51 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -1.99 Total: 6.65 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.49 Total: -35.72 kcal Atomic # 7 Polarization: -122.26 SS G_CDS: -1.17 Total: -123.43 kcal Atomic # 8 Polarization: -101.08 SS G_CDS: -3.93 Total: -105.00 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 123.61 SS G_CDS: -0.22 Total: 123.38 kcal Total: -86.71 -0.80 -87.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.243 kcal (2) G-P(sol) polarization free energy of solvation -86.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds