Wall clock time and date at job start Tue Mar 31 2020 20:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47231 * 2 1 4 4 C 1.50707 * 109.47154 * 120.00133 * 2 1 3 5 5 H 1.07999 * 119.99790 * 119.99802 * 4 2 1 6 6 C 1.37881 * 119.99789 * 300.00104 * 4 2 1 7 7 N 1.31507 * 120.00028 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99816 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47424 * 89.99697 * 8 6 4 10 10 H 1.48509 * 109.46963 * 210.00192 * 8 6 4 11 11 H 1.48507 * 109.46995 * 329.99756 * 8 6 4 12 12 N 1.46500 * 109.47359 * 239.99739 * 2 1 3 13 13 C 1.46496 * 120.00339 * 295.22708 * 12 2 1 14 14 S 1.65607 * 119.99625 * 115.21719 * 12 2 1 15 15 O 1.42101 * 106.39836 * 208.25819 * 14 12 2 16 16 O 1.42099 * 106.40446 * 341.17872 * 14 12 2 17 17 C 1.76193 * 107.21516 * 94.71803 * 14 12 2 18 18 C 1.38046 * 120.06351 * 13.18755 * 17 14 12 19 19 C 1.38296 * 120.12033 * 179.97438 * 18 17 14 20 20 C 1.38335 * 120.23716 * 359.97438 * 19 18 17 21 21 C 1.38013 * 120.11424 * 0.02562 * 20 19 18 22 22 C 1.39280 * 120.06251 * 192.90367 * 17 14 12 23 23 C 1.48467 * 120.11252 * 0.02562 * 22 17 14 24 24 N 1.34055 * 126.67389 * 353.30426 * 23 22 17 25 25 N 1.28983 * 107.26594 * 179.83407 * 24 23 22 26 26 N 1.28726 * 108.94785 * 0.43808 * 25 24 23 27 27 H 0.96996 * 125.34567 * 179.71734 * 26 25 24 28 28 N 1.28872 * 109.31535 * 359.72084 * 26 25 24 29 29 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47285 * 299.99633 * 1 2 3 31 31 H 1.09001 * 109.47123 * 60.00194 * 1 2 3 32 32 H 0.97005 * 120.00078 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47517 * 89.99162 * 13 12 2 34 34 H 1.08999 * 109.47274 * 209.99954 * 13 12 2 35 35 H 1.09004 * 109.46621 * 329.99396 * 13 12 2 36 36 H 1.08007 * 119.93987 * 359.97438 * 18 17 14 37 37 H 1.08002 * 119.87945 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.93809 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.05060 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4880 -2.5655 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 1.7528 -2.1200 -1.3765 14 16 2.8705 0.1446 -2.3445 15 8 2.6320 -0.5155 -3.5801 16 8 2.5885 1.5209 -2.1315 17 6 4.5817 -0.0740 -1.9858 18 6 4.9814 -1.0407 -1.0851 19 6 6.3243 -1.2136 -0.8031 20 6 7.2738 -0.4202 -1.4215 21 6 6.8849 0.5493 -2.3235 22 6 5.5339 0.7244 -2.6149 23 6 5.1103 1.7618 -3.5887 24 7 3.8698 1.9629 -4.0555 25 7 3.9254 2.9581 -4.8741 26 7 5.1412 3.3756 -4.9426 27 1 5.4514 4.1124 -5.4918 28 7 5.8817 2.6608 -4.1669 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7089 1.1613 3.4845 33 1 0.8104 -2.2503 -1.9085 34 1 2.5610 -2.5698 -1.9533 35 1 1.6896 -2.6036 -0.4016 36 1 4.2442 -1.6632 -0.5998 37 1 6.6327 -1.9709 -0.0975 38 1 8.3211 -0.5591 -1.1973 39 1 7.6271 1.1679 -2.8061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824385695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:06 Heat of formation + Delta-G solvation = 101.619548 kcal Electronic energy + Delta-G solvation = -28104.629295 eV Core-core repulsion = 24178.650070 eV Total energy + Delta-G solvation = -3925.979225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.48868 -39.14896 -36.34849 -36.19066 -35.10259 -34.34535 -33.65382 -32.59382 -31.24850 -30.57528 -29.05293 -25.52201 -25.20399 -24.88560 -24.60155 -22.78949 -21.74717 -20.66885 -19.40414 -18.33356 -17.34263 -17.15610 -16.70123 -16.34539 -16.23393 -15.25368 -14.98103 -14.67047 -14.47620 -14.14442 -13.84271 -13.49321 -13.09399 -12.98423 -12.67264 -12.47189 -12.11110 -11.85732 -11.73163 -11.54288 -11.44711 -11.24622 -11.19886 -11.15389 -11.00848 -10.97394 -10.87025 -10.76978 -10.40185 -10.28348 -10.12961 -9.99666 -9.26419 -9.19094 -8.77304 -8.46809 -7.93887 -6.08282 -4.17210 0.49884 1.07794 1.17778 1.23629 2.18303 2.33241 3.24528 3.31894 3.32700 3.44614 3.61805 3.81376 4.08194 4.35320 4.43447 4.88809 4.91465 5.07877 5.22550 5.28751 5.36507 5.39660 5.47595 5.64517 5.67851 5.87791 6.09492 6.17130 6.22930 6.30273 6.35582 6.39090 6.70700 6.78864 6.93574 6.96720 7.17132 7.52071 7.63739 7.82548 8.07465 8.09269 8.27418 8.84432 9.48756 10.96949 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.004949 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.771935 B = 5656.032276 C = 6429.614221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.063 0.937 4 C -0.528 4.528 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.987 5.987 13 C 0.097 3.903 14 S 2.694 3.306 15 O -0.963 6.963 16 O -0.938 6.938 17 C -0.632 4.632 18 C -0.021 4.021 19 C -0.118 4.118 20 C -0.081 4.081 21 C -0.102 4.102 22 C 0.072 3.928 23 C 0.195 3.805 24 N -0.252 5.252 25 N -0.029 5.029 26 N -0.229 5.229 27 H 0.476 0.524 28 N -0.283 5.283 29 H 0.033 0.967 30 H 0.092 0.908 31 H 0.014 0.986 32 H 0.264 0.736 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.964 -0.873 -10.127 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.080 0.920 4 C -0.567 4.567 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.828 5.828 13 C -0.049 4.049 14 S 2.780 3.220 15 O -0.953 6.953 16 O -0.927 6.927 17 C -0.715 4.715 18 C -0.039 4.039 19 C -0.137 4.137 20 C -0.099 4.099 21 C -0.123 4.123 22 C 0.068 3.932 23 C -0.085 4.085 24 N -0.126 5.126 25 N -0.025 5.025 26 N -0.075 5.075 27 H 0.330 0.670 28 N -0.135 5.135 29 H 0.052 0.948 30 H 0.111 0.889 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.129 0.053 -11.048 15.682 hybrid contribution 1.510 -0.330 1.345 2.049 sum 12.639 -0.277 -9.703 15.936 Atomic orbital electron populations 1.22058 0.97834 0.99716 1.00850 1.18800 0.91913 0.93103 0.79951 0.91969 1.21341 1.32113 1.13123 0.90165 0.91813 1.24910 0.94916 0.94948 0.98937 1.69885 1.36008 1.22511 1.23799 0.86567 0.78636 0.79945 0.82662 1.20684 1.21166 1.19802 1.57628 1.67383 1.18909 1.38896 1.21342 0.99889 0.81168 1.02532 1.02280 0.72927 0.73849 0.72903 1.93511 1.84011 1.76581 1.41170 1.93555 1.82694 1.31159 1.85304 1.31596 1.27697 1.04771 1.07476 1.21094 0.97334 0.93636 0.91845 1.21473 0.93077 0.99724 0.99461 1.21290 1.00043 0.93958 0.94611 1.21164 0.93919 0.98685 0.98509 1.16543 0.93548 0.90784 0.92362 1.23821 0.87087 0.97496 1.00104 1.76003 1.19122 1.10133 1.07357 1.78903 1.02776 1.06988 1.13809 1.47720 1.04034 1.25824 1.29895 0.66958 1.74769 1.23618 1.06862 1.08278 0.94806 0.88914 0.96725 0.92615 0.93289 0.93115 0.89692 0.83110 0.84622 0.84732 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.04 37.16 0.34 -3.15 16 2 C 0.26 6.52 2.61 -69.08 -0.18 6.34 16 3 H 0.06 1.72 6.88 -51.93 -0.36 1.36 16 4 C -0.53 -13.20 7.96 -34.44 -0.27 -13.48 16 5 H 0.06 1.49 6.82 -52.49 -0.36 1.13 16 6 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 12 N -0.99 -21.02 2.24 -115.85 -0.26 -21.28 16 13 C 0.10 1.71 8.60 59.84 0.51 2.23 16 14 S 2.69 58.57 3.97 -107.50 -0.43 58.15 16 15 O -0.96 -21.70 16.78 -57.17 -0.96 -22.66 16 16 O -0.94 -23.07 13.91 -57.17 -0.80 -23.86 16 17 C -0.63 -11.89 5.85 -39.26 -0.23 -12.12 16 18 C -0.02 -0.33 9.56 -39.63 -0.38 -0.71 16 19 C -0.12 -1.52 10.04 -39.52 -0.40 -1.92 16 20 C -0.08 -0.94 10.03 -39.63 -0.40 -1.34 16 21 C -0.10 -1.37 9.70 -39.27 -0.38 -1.75 16 22 C 0.07 1.26 5.87 -104.89 -0.62 0.64 16 23 C 0.19 3.50 7.61 -156.29 -1.19 2.31 16 24 N -0.25 -5.07 7.82 32.16 0.25 -4.82 16 25 N -0.03 -0.47 13.47 60.35 0.81 0.34 16 26 N -0.23 -2.69 7.90 60.35 0.48 -2.21 16 27 H 0.48 2.66 8.96 -340.38 -3.05 -0.39 16 28 N -0.28 -4.02 12.10 32.17 0.39 -3.63 16 29 H 0.03 0.75 7.79 -51.93 -0.40 0.34 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.76 7.82 -51.93 -0.41 0.36 16 35 H 0.08 1.46 6.66 -51.93 -0.35 1.12 16 36 H 0.15 2.38 6.28 -52.48 -0.33 2.05 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.14 1.50 7.90 -52.49 -0.41 1.08 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -34.85 338.45 -9.90 -44.75 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.81 Total: 0.16 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -3.29 Total: -21.35 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 2.30 Total: -55.18 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -1.76 Total: -46.53 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 58.57 SS G_CDS: -0.43 Total: 58.15 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.85 -9.90 -44.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.369 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds