Wall clock time and date at job start Tue Mar 31 2020 20:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47231 * 2 1 4 4 C 1.50707 * 109.47154 * 120.00133 * 2 1 3 5 5 H 1.07999 * 119.99790 * 119.99802 * 4 2 1 6 6 C 1.37881 * 119.99789 * 300.00104 * 4 2 1 7 7 N 1.31507 * 120.00028 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99816 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47424 * 89.99697 * 8 6 4 10 10 H 1.48509 * 109.46963 * 210.00192 * 8 6 4 11 11 H 1.48507 * 109.46995 * 329.99756 * 8 6 4 12 12 N 1.46500 * 109.47359 * 239.99739 * 2 1 3 13 13 C 1.46496 * 120.00339 * 295.22708 * 12 2 1 14 14 S 1.65607 * 119.99625 * 115.21719 * 12 2 1 15 15 O 1.42101 * 106.39836 * 208.25819 * 14 12 2 16 16 O 1.42099 * 106.40446 * 341.17872 * 14 12 2 17 17 C 1.76193 * 107.21516 * 94.71803 * 14 12 2 18 18 C 1.38046 * 120.06351 * 13.18755 * 17 14 12 19 19 C 1.38296 * 120.12033 * 179.97438 * 18 17 14 20 20 C 1.38335 * 120.23716 * 359.97438 * 19 18 17 21 21 C 1.38013 * 120.11424 * 0.02562 * 20 19 18 22 22 C 1.39280 * 120.06251 * 192.90367 * 17 14 12 23 23 C 1.48467 * 120.11252 * 0.02562 * 22 17 14 24 24 N 1.34055 * 126.67389 * 353.30426 * 23 22 17 25 25 N 1.28983 * 107.26594 * 179.83407 * 24 23 22 26 26 N 1.28726 * 108.94785 * 0.43808 * 25 24 23 27 27 H 0.96996 * 125.34567 * 179.71734 * 26 25 24 28 28 N 1.28872 * 109.31535 * 359.72084 * 26 25 24 29 29 H 1.09003 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47285 * 299.99633 * 1 2 3 31 31 H 1.09001 * 109.47123 * 60.00194 * 1 2 3 32 32 H 0.97005 * 120.00078 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47517 * 89.99162 * 13 12 2 34 34 H 1.08999 * 109.47274 * 209.99954 * 13 12 2 35 35 H 1.09004 * 109.46621 * 329.99396 * 13 12 2 36 36 H 1.08007 * 119.93987 * 359.97438 * 18 17 14 37 37 H 1.08002 * 119.87945 * 179.97438 * 19 18 17 38 38 H 1.07998 * 119.93809 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.05060 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1123 11 1 2.4880 -2.5655 3.7122 12 7 2.0184 -0.6907 -1.1961 13 6 1.7528 -2.1200 -1.3765 14 16 2.8705 0.1446 -2.3445 15 8 2.6320 -0.5155 -3.5801 16 8 2.5885 1.5209 -2.1315 17 6 4.5817 -0.0740 -1.9858 18 6 4.9814 -1.0407 -1.0851 19 6 6.3243 -1.2136 -0.8031 20 6 7.2738 -0.4202 -1.4215 21 6 6.8849 0.5493 -2.3235 22 6 5.5339 0.7244 -2.6149 23 6 5.1103 1.7618 -3.5887 24 7 3.8698 1.9629 -4.0555 25 7 3.9254 2.9581 -4.8741 26 7 5.1412 3.3756 -4.9426 27 1 5.4514 4.1124 -5.4918 28 7 5.8817 2.6608 -4.1669 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7089 1.1613 3.4845 33 1 0.8104 -2.2503 -1.9085 34 1 2.5610 -2.5698 -1.9533 35 1 1.6896 -2.6036 -0.4016 36 1 4.2442 -1.6632 -0.5998 37 1 6.6327 -1.9709 -0.0975 38 1 8.3211 -0.5591 -1.1973 39 1 7.6271 1.1679 -2.8061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824385695.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:05 Heat of formation + Delta-G solvation = 75.759128 kcal Electronic energy + Delta-G solvation = -28105.750687 eV Core-core repulsion = 24178.650070 eV Total energy + Delta-G solvation = -3927.100617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.68842 -40.24644 -38.08964 -37.92180 -36.74909 -35.63755 -34.85600 -34.45650 -32.38348 -31.70219 -30.89634 -27.19879 -27.04925 -26.10955 -25.80580 -23.95279 -22.95661 -22.47895 -20.60492 -19.75756 -18.83201 -18.35747 -18.29464 -18.16802 -17.45114 -17.03405 -16.35445 -16.08424 -15.77561 -15.40577 -15.20509 -15.04547 -14.62730 -14.34855 -14.26859 -13.72846 -13.55374 -13.35369 -13.27140 -13.08294 -12.98236 -12.92059 -12.72955 -12.65840 -12.64007 -12.45856 -12.26478 -12.14823 -12.13610 -12.04504 -11.81718 -11.62895 -11.07483 -10.45214 -10.38782 -9.88072 -9.65211 -8.04184 -6.19689 -0.67097 -0.43031 -0.06166 0.08821 1.09310 1.26777 1.51049 1.52165 1.61784 2.05236 2.44572 2.52206 2.52761 2.86880 2.91213 3.25089 3.70824 3.82901 3.87667 4.04872 4.09602 4.22719 4.33588 4.34220 4.52444 4.72304 4.80582 4.84903 4.98724 5.01474 5.05382 5.17466 5.19130 5.29760 5.30121 5.49954 5.64464 5.72775 5.78392 5.88794 6.12668 6.31671 6.86465 6.89381 7.49944 9.01444 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.004949 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.771935 B = 5656.032276 C = 6429.614221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.271 3.729 3 H 0.021 0.979 4 C -0.528 4.528 5 H 0.082 0.918 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.292 1.292 11 H -0.255 1.255 12 N -0.992 5.992 13 C 0.088 3.912 14 S 2.699 3.301 15 O -0.985 6.985 16 O -0.982 6.982 17 C -0.658 4.658 18 C -0.038 4.038 19 C -0.113 4.113 20 C -0.060 4.060 21 C -0.096 4.096 22 C 0.043 3.957 23 C 0.172 3.828 24 N -0.307 5.307 25 N -0.045 5.045 26 N -0.189 5.189 27 H 0.500 0.500 28 N -0.263 5.263 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.013 0.987 32 H 0.262 0.738 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.174 0.826 38 H 0.187 0.813 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.686 -2.576 -9.525 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.167 3.833 3 H 0.039 0.961 4 C -0.567 4.567 5 H 0.100 0.900 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.218 1.218 11 H -0.179 1.179 12 N -0.833 5.833 13 C -0.057 4.057 14 S 2.791 3.209 15 O -0.975 6.975 16 O -0.971 6.971 17 C -0.747 4.747 18 C -0.057 4.057 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.117 4.117 22 C 0.038 3.962 23 C -0.108 4.108 24 N -0.180 5.180 25 N -0.040 5.040 26 N -0.042 5.042 27 H 0.361 0.639 28 N -0.116 5.116 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.166 0.834 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.789 -1.653 -10.499 18.212 hybrid contribution 0.526 0.271 1.060 1.214 sum 15.315 -1.382 -9.439 18.043 Atomic orbital electron populations 1.21965 0.98007 1.00223 0.99732 1.18464 0.91798 0.91581 0.81428 0.96111 1.21645 1.31686 1.13293 0.90093 0.90003 1.25763 0.95149 0.95590 1.02093 1.70050 1.37574 1.24241 1.24265 0.85507 0.77671 0.79648 0.78531 1.20423 1.21799 1.17861 1.57441 1.68208 1.20133 1.37473 1.21595 1.01285 0.79324 1.03476 1.01588 0.74098 0.72779 0.72430 1.93459 1.85227 1.76614 1.42203 1.93486 1.84228 1.33664 1.85744 1.30953 1.25302 1.07782 1.10643 1.21283 0.99386 0.93292 0.91695 1.21955 0.91520 1.00274 0.99428 1.21925 1.02326 0.91513 0.92017 1.21601 0.92486 0.99174 0.98449 1.16897 0.95112 0.91121 0.93034 1.24163 0.86912 0.98669 1.01028 1.75955 1.20993 1.11898 1.09147 1.78800 1.04232 1.06957 1.14002 1.47801 1.02829 1.25186 1.28379 0.63937 1.74709 1.22875 1.06110 1.07893 0.93329 0.91046 0.96822 0.92867 0.92814 0.90536 0.88959 0.83366 0.80811 0.79530 0.81627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.00 9.04 71.98 0.65 -6.35 16 2 C 0.27 13.83 2.61 44.25 0.12 13.95 16 3 H 0.02 1.24 6.88 -2.39 -0.02 1.22 16 4 C -0.53 -26.43 7.96 25.60 0.20 -26.23 16 5 H 0.08 3.70 6.82 -2.91 -0.02 3.68 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -51.89 11.32 21.45 0.24 -51.65 16 8 Si 0.96 40.27 29.54 68.60 2.03 42.29 16 9 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 12 N -0.99 -43.41 2.24 -520.45 -1.17 -44.58 16 13 C 0.09 3.10 8.60 127.77 1.10 4.20 16 14 S 2.70 122.63 3.97 -56.49 -0.22 122.40 16 15 O -0.99 -46.40 16.78 -128.00 -2.15 -48.55 16 16 O -0.98 -51.73 13.91 -128.00 -1.78 -53.51 16 17 C -0.66 -24.87 5.85 22.47 0.13 -24.74 16 18 C -0.04 -1.17 9.56 22.24 0.21 -0.96 16 19 C -0.11 -2.43 10.04 22.31 0.22 -2.21 16 20 C -0.06 -1.09 10.03 22.24 0.22 -0.86 16 21 C -0.10 -2.28 9.70 22.47 0.22 -2.06 16 22 C 0.04 1.47 5.87 -20.04 -0.12 1.35 16 23 C 0.17 6.23 7.61 137.38 1.05 7.27 16 24 N -0.31 -12.83 7.82 -52.17 -0.41 -13.24 16 25 N -0.04 -1.49 13.47 37.02 0.50 -0.99 16 26 N -0.19 -4.29 7.90 37.02 0.29 -3.99 16 27 H 0.50 4.76 8.96 -347.55 -3.12 1.64 16 28 N -0.26 -7.16 12.10 -52.12 -0.63 -7.79 16 29 H 0.05 2.21 7.79 -2.39 -0.02 2.19 16 30 H 0.07 3.89 6.07 -2.39 -0.01 3.88 16 31 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.26 14.08 8.31 -92.70 -0.77 13.30 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 35 H 0.09 3.08 6.66 -2.38 -0.02 3.06 16 36 H 0.15 4.51 6.28 -2.91 -0.02 4.49 16 37 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.19 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.17 2.89 7.90 -2.91 -0.02 2.86 16 Total: -1.00 -81.06 338.45 -0.84 -81.90 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -2.00 Total: 13.18 kcal Atomic # 6 Polarization: -39.94 SS G_CDS: 4.46 Total: -35.49 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -1.17 Total: -122.24 kcal Atomic # 8 Polarization: -98.13 SS G_CDS: -3.93 Total: -102.06 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 16 Polarization: 122.63 SS G_CDS: -0.22 Total: 122.40 kcal Total: -81.06 -0.84 -81.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824385695.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.663 kcal (2) G-P(sol) polarization free energy of solvation -81.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds