Wall clock time and date at job start Tue Mar 31 2020 20:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47359 * 2 1 4 4 C 1.36932 * 119.99966 * 273.13516 * 3 2 1 5 5 H 1.08002 * 119.99938 * 144.47152 * 4 3 2 6 6 C 1.38812 * 119.99805 * 324.46491 * 4 3 2 7 7 N 1.31618 * 120.00160 * 337.11480 * 6 4 3 8 8 Si 1.86800 * 119.99831 * 157.12020 * 6 4 3 9 9 H 1.48503 * 109.47280 * 59.99693 * 8 6 4 10 10 H 1.48495 * 109.47250 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47178 * 299.99902 * 8 6 4 12 12 S 1.65604 * 119.99658 * 93.13225 * 3 2 1 13 13 O 1.42095 * 106.40377 * 18.01710 * 12 3 2 14 14 O 1.42099 * 106.40069 * 150.94181 * 12 3 2 15 15 C 1.76206 * 107.21458 * 264.47980 * 12 3 2 16 16 C 1.38052 * 120.06201 * 346.34300 * 15 12 3 17 17 C 1.38290 * 120.11564 * 179.76789 * 16 15 12 18 18 C 1.38336 * 120.23785 * 0.50957 * 17 16 15 19 19 C 1.38003 * 120.11514 * 359.74501 * 18 17 16 20 20 C 1.50706 * 120.05684 * 179.97438 * 19 18 17 21 21 C 1.39276 * 120.05762 * 166.61723 * 15 12 3 22 22 C 1.48471 * 120.11556 * 359.95924 * 21 15 12 23 23 N 1.34039 * 126.67423 * 5.24020 * 22 21 15 24 24 N 1.28986 * 107.26686 * 180.02562 * 23 22 21 25 25 N 1.28724 * 108.94476 * 0.02562 * 24 23 22 26 26 H 0.97002 * 125.34280 * 179.97438 * 25 24 23 27 27 N 1.28878 * 109.31978 * 359.72858 * 25 24 23 28 28 H 1.08998 * 109.46925 * 299.99797 * 1 2 3 29 29 H 1.08997 * 109.46854 * 60.00193 * 1 2 3 30 30 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47580 * 239.99845 * 2 1 3 32 32 H 1.09004 * 109.47069 * 120.00457 * 2 1 3 33 33 H 0.97006 * 119.99523 * 179.97438 * 7 6 4 34 34 H 1.08003 * 119.93536 * 0.02562 * 16 15 12 35 35 H 1.08004 * 119.87946 * 180.23121 * 17 16 15 36 36 H 1.07999 * 119.94021 * 179.76779 * 18 17 16 37 37 H 1.09000 * 109.46899 * 270.02307 * 20 19 18 38 38 H 1.09003 * 109.46763 * 30.02257 * 20 19 18 39 39 H 1.08994 * 109.47124 * 150.02211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1855 2.0483 -1.1841 5 1 1.9791 3.1069 -1.2413 6 6 2.6203 1.3640 -2.3108 7 7 3.2889 0.2379 -2.1797 8 14 2.2565 2.0415 -4.0132 9 1 2.8693 3.3870 -4.1519 10 1 2.8244 1.1313 -5.0400 11 1 0.7871 2.1451 -4.2012 12 16 2.3683 2.1357 1.4321 13 8 2.5091 1.1079 2.4032 14 8 3.3897 3.0818 1.1480 15 6 0.9439 3.0646 1.8938 16 6 -0.0633 3.2878 0.9764 17 6 -1.1839 4.0126 1.3390 18 6 -1.2972 4.5266 2.6183 19 6 -0.2938 4.3137 3.5415 20 6 -0.4184 4.8748 4.9347 21 6 0.8348 3.5798 3.1831 22 6 1.9173 3.3472 4.1723 23 7 3.0951 2.7493 3.9444 24 7 3.7450 2.7466 5.0586 25 7 3.0258 3.3132 5.9633 26 1 3.2853 3.4386 6.8895 27 7 1.9087 3.6924 5.4444 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5924 -0.2404 -2.9672 34 1 0.0222 2.8922 -0.0249 35 1 -1.9713 4.1819 0.6194 36 1 -2.1727 5.0951 2.8952 37 1 0.0162 5.8739 4.9642 38 1 -1.4712 4.9281 5.2120 39 1 0.1096 4.2280 5.6353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825395828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:06 Heat of formation + Delta-G solvation = 109.563052 kcal Electronic energy + Delta-G solvation = -28401.522751 eV Core-core repulsion = 24475.887982 eV Total energy + Delta-G solvation = -3925.634769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.35272 -39.28720 -35.91997 -35.73317 -34.63309 -34.06871 -33.85472 -32.41323 -31.60663 -30.58825 -29.16685 -27.15521 -24.66545 -24.52943 -24.27660 -22.41466 -21.57549 -21.00830 -19.17051 -18.29933 -17.36326 -17.03572 -16.64226 -16.16305 -15.97616 -15.05104 -14.71225 -14.40998 -14.30477 -14.04209 -13.79452 -13.43824 -13.25760 -12.72326 -12.60531 -12.27359 -12.19749 -12.04023 -11.90396 -11.72397 -11.35249 -11.27651 -11.11576 -10.90922 -10.86636 -10.76557 -10.71486 -10.60454 -10.43529 -10.38231 -10.05852 -9.86490 -9.66858 -8.97952 -8.93481 -8.50492 -7.66144 -6.19668 -3.90569 0.64026 1.22611 1.35713 1.68447 2.30581 2.47827 3.26189 3.31526 3.33240 3.66616 3.71560 4.21089 4.23727 4.51270 4.76316 4.88037 4.99879 5.14815 5.28255 5.31118 5.45117 5.52730 5.59717 5.68529 5.82008 5.91669 6.01121 6.14994 6.19719 6.29095 6.35960 6.37273 6.42131 6.46384 6.60740 6.71059 6.95572 6.97770 7.35590 7.47914 7.86461 8.24899 8.48443 9.09369 9.46148 10.83439 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.005174 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.414559 B = 5410.267969 C = 6298.663399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.848 5.848 4 C -0.301 4.301 5 H 0.090 0.910 6 C 0.044 3.956 7 N -0.856 5.856 8 Si 0.911 3.089 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 S 2.652 3.348 13 O -0.974 6.974 14 O -0.958 6.958 15 C -0.616 4.616 16 C -0.033 4.033 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.071 4.071 20 C -0.128 4.128 21 C 0.062 3.938 22 C 0.199 3.801 23 N -0.241 5.241 24 N -0.032 5.032 25 N -0.236 5.236 26 H 0.473 0.527 27 N -0.287 5.287 28 H 0.037 0.963 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.267 0.733 34 H 0.159 0.841 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 6.302 11.673 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.015 4.015 3 N -0.681 5.681 4 C -0.435 4.435 5 H 0.108 0.892 6 C -0.163 4.163 7 N -0.495 5.495 8 Si 0.737 3.263 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 S 2.743 3.257 13 O -0.962 6.962 14 O -0.947 6.947 15 C -0.698 4.698 16 C -0.052 4.052 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.074 4.074 20 C -0.185 4.185 21 C 0.058 3.942 22 C -0.080 4.080 23 N -0.115 5.115 24 N -0.028 5.028 25 N -0.081 5.081 26 H 0.327 0.673 27 N -0.139 5.139 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.131 0.869 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.046 5.943 12.373 15.911 hybrid contribution -1.140 0.810 -0.437 1.465 sum -9.186 6.753 11.936 16.506 Atomic orbital electron populations 1.22263 0.99008 1.00329 1.00994 1.21304 0.91291 0.84261 1.04647 1.52739 1.77191 1.20655 1.17470 1.18993 1.44125 0.94823 0.85570 0.89240 1.25306 0.94429 0.96802 0.99809 1.70000 1.32009 1.17101 1.30342 0.86270 0.78840 0.79069 0.82131 1.19706 1.20989 1.19900 1.04312 0.73311 0.74232 0.73828 1.93421 1.84751 1.56113 1.61946 1.93449 1.51984 1.64806 1.84511 1.31860 1.22891 1.15631 0.99426 1.21260 0.90967 0.93533 0.99397 1.21461 0.98281 0.97595 0.96410 1.21114 0.97932 0.98549 0.93140 1.19919 0.93020 0.97277 0.97147 1.21186 1.02535 1.01885 0.92880 1.16532 0.90278 0.98401 0.89004 1.23852 0.95002 0.98920 0.90271 1.76174 1.03490 1.15213 1.16620 1.78927 1.19113 1.12075 0.92700 1.47877 1.08961 1.36736 1.14527 0.67284 1.74854 1.06530 1.22518 1.09979 0.94424 0.92197 0.93262 0.86931 0.92164 0.92254 0.82378 0.84879 0.85093 0.91050 0.91543 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.19 37.16 0.38 -2.74 16 2 C 0.11 2.57 5.96 -4.04 -0.02 2.55 16 3 N -0.85 -21.07 2.10 -59.90 -0.13 -21.20 16 4 C -0.30 -7.74 7.90 -15.06 -0.12 -7.86 16 5 H 0.09 2.21 7.82 -52.49 -0.41 1.80 16 6 C 0.04 1.14 4.97 -17.43 -0.09 1.05 16 7 N -0.86 -23.06 11.38 55.49 0.63 -22.43 16 8 Si 0.91 19.66 29.61 -169.99 -5.03 14.63 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 S 2.65 66.32 4.00 -107.50 -0.43 65.89 16 13 O -0.97 -25.39 13.80 -57.17 -0.79 -26.18 16 14 O -0.96 -27.06 16.92 -57.17 -0.97 -28.03 16 15 C -0.62 -12.76 5.86 -39.26 -0.23 -12.99 16 16 C -0.03 -0.59 9.07 -39.63 -0.36 -0.95 16 17 C -0.12 -1.63 10.04 -39.53 -0.40 -2.03 16 18 C -0.09 -1.14 9.69 -39.63 -0.38 -1.53 16 19 C -0.07 -1.05 5.91 -104.30 -0.62 -1.67 16 20 C -0.13 -1.47 9.27 36.01 0.33 -1.13 16 21 C 0.06 1.18 5.87 -104.89 -0.62 0.56 16 22 C 0.20 3.85 7.50 -156.31 -1.17 2.68 16 23 N -0.24 -5.31 7.78 32.16 0.25 -5.06 16 24 N -0.03 -0.57 13.47 60.35 0.81 0.24 16 25 N -0.24 -2.98 7.90 60.35 0.48 -2.51 16 26 H 0.47 3.01 8.96 -340.37 -3.05 -0.05 16 27 N -0.29 -4.27 8.93 32.17 0.29 -3.98 16 28 H 0.04 0.66 7.66 -51.93 -0.40 0.27 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 2.77 5.41 -51.92 -0.28 2.49 16 32 H 0.06 1.39 6.92 -51.93 -0.36 1.04 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.16 2.80 6.29 -52.48 -0.33 2.47 16 35 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.10 1.18 5.06 -51.93 -0.26 0.92 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -35.56 334.51 -9.90 -45.46 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.76 Total: 2.16 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -3.29 Total: -24.04 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 2.33 Total: -54.93 kcal Atomic # 8 Polarization: -52.45 SS G_CDS: -1.76 Total: -54.21 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 16 Polarization: 66.32 SS G_CDS: -0.43 Total: 65.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.56 -9.90 -45.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825395828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.019 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds