Wall clock time and date at job start Tue Mar 31 2020 20:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47359 * 2 1 4 4 C 1.36932 * 119.99966 * 273.13516 * 3 2 1 5 5 H 1.08002 * 119.99938 * 144.47152 * 4 3 2 6 6 C 1.38812 * 119.99805 * 324.46491 * 4 3 2 7 7 N 1.31618 * 120.00160 * 337.11480 * 6 4 3 8 8 Si 1.86800 * 119.99831 * 157.12020 * 6 4 3 9 9 H 1.48503 * 109.47280 * 59.99693 * 8 6 4 10 10 H 1.48495 * 109.47250 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47178 * 299.99902 * 8 6 4 12 12 S 1.65604 * 119.99658 * 93.13225 * 3 2 1 13 13 O 1.42095 * 106.40377 * 18.01710 * 12 3 2 14 14 O 1.42099 * 106.40069 * 150.94181 * 12 3 2 15 15 C 1.76206 * 107.21458 * 264.47980 * 12 3 2 16 16 C 1.38052 * 120.06201 * 346.34300 * 15 12 3 17 17 C 1.38290 * 120.11564 * 179.76789 * 16 15 12 18 18 C 1.38336 * 120.23785 * 0.50957 * 17 16 15 19 19 C 1.38003 * 120.11514 * 359.74501 * 18 17 16 20 20 C 1.50706 * 120.05684 * 179.97438 * 19 18 17 21 21 C 1.39276 * 120.05762 * 166.61723 * 15 12 3 22 22 C 1.48471 * 120.11556 * 359.95924 * 21 15 12 23 23 N 1.34039 * 126.67423 * 5.24020 * 22 21 15 24 24 N 1.28986 * 107.26686 * 180.02562 * 23 22 21 25 25 N 1.28724 * 108.94476 * 0.02562 * 24 23 22 26 26 H 0.97002 * 125.34280 * 179.97438 * 25 24 23 27 27 N 1.28878 * 109.31978 * 359.72858 * 25 24 23 28 28 H 1.08998 * 109.46925 * 299.99797 * 1 2 3 29 29 H 1.08997 * 109.46854 * 60.00193 * 1 2 3 30 30 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47580 * 239.99845 * 2 1 3 32 32 H 1.09004 * 109.47069 * 120.00457 * 2 1 3 33 33 H 0.97006 * 119.99523 * 179.97438 * 7 6 4 34 34 H 1.08003 * 119.93536 * 0.02562 * 16 15 12 35 35 H 1.08004 * 119.87946 * 180.23121 * 17 16 15 36 36 H 1.07999 * 119.94021 * 179.76779 * 18 17 16 37 37 H 1.09000 * 109.46899 * 270.02307 * 20 19 18 38 38 H 1.09003 * 109.46763 * 30.02257 * 20 19 18 39 39 H 1.08994 * 109.47124 * 150.02211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1855 2.0483 -1.1841 5 1 1.9791 3.1069 -1.2413 6 6 2.6203 1.3640 -2.3108 7 7 3.2889 0.2379 -2.1797 8 14 2.2565 2.0415 -4.0132 9 1 2.8693 3.3870 -4.1519 10 1 2.8244 1.1313 -5.0400 11 1 0.7871 2.1451 -4.2012 12 16 2.3683 2.1357 1.4321 13 8 2.5091 1.1079 2.4032 14 8 3.3897 3.0818 1.1480 15 6 0.9439 3.0646 1.8938 16 6 -0.0633 3.2878 0.9764 17 6 -1.1839 4.0126 1.3390 18 6 -1.2972 4.5266 2.6183 19 6 -0.2938 4.3137 3.5415 20 6 -0.4184 4.8748 4.9347 21 6 0.8348 3.5798 3.1831 22 6 1.9173 3.3472 4.1723 23 7 3.0951 2.7493 3.9444 24 7 3.7450 2.7466 5.0586 25 7 3.0258 3.3132 5.9633 26 1 3.2853 3.4386 6.8895 27 7 1.9087 3.6924 5.4444 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5924 -0.2404 -2.9672 34 1 0.0222 2.8922 -0.0249 35 1 -1.9713 4.1819 0.6194 36 1 -2.1727 5.0951 2.8952 37 1 0.0162 5.8739 4.9642 38 1 -1.4712 4.9281 5.2120 39 1 0.1096 4.2280 5.6353 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825395828.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:04 Heat of formation + Delta-G solvation = 83.041161 kcal Electronic energy + Delta-G solvation = -28402.672827 eV Core-core repulsion = 24475.887982 eV Total energy + Delta-G solvation = -3926.784845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -45.65396 -40.47358 -37.78086 -37.66333 -36.42499 -35.55899 -35.11290 -33.66475 -33.45719 -31.81177 -30.91850 -28.22061 -26.46740 -25.94962 -25.54155 -23.78255 -23.22775 -22.25986 -20.44297 -20.12358 -18.97157 -18.33914 -18.21332 -17.99542 -17.38542 -16.69524 -16.18445 -16.16994 -15.65391 -15.27950 -15.24540 -14.82535 -14.63197 -14.39561 -14.02328 -13.76092 -13.56987 -13.33795 -13.21856 -13.16859 -12.91803 -12.73795 -12.63323 -12.59865 -12.54449 -12.41022 -12.23559 -12.11446 -12.08820 -11.94433 -11.80289 -11.53222 -11.37703 -10.83577 -10.18477 -9.69480 -9.57603 -8.14826 -5.91445 -0.62745 -0.12862 -0.01647 0.10145 1.13531 1.30189 1.54796 1.56369 1.64897 2.29605 2.47927 2.52571 2.78873 2.93288 2.98075 3.28448 3.78500 3.92232 3.98968 4.14479 4.19564 4.29714 4.30663 4.46205 4.50043 4.71947 4.75620 4.80716 4.84550 4.86306 5.01702 5.12072 5.26720 5.28777 5.33211 5.36656 5.50443 5.63416 5.64322 5.87214 5.97302 6.53566 6.92203 7.13240 7.50637 8.88414 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.005174 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.414559 B = 5410.267969 C = 6298.663399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.109 3.891 3 N -0.856 5.856 4 C -0.311 4.311 5 H 0.092 0.908 6 C -0.003 4.003 7 N -0.892 5.892 8 Si 0.979 3.021 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.250 1.250 12 S 2.646 3.354 13 O -1.005 7.005 14 O -1.015 7.015 15 C -0.639 4.639 16 C -0.048 4.048 17 C -0.106 4.106 18 C -0.068 4.068 19 C -0.067 4.067 20 C -0.127 4.127 21 C 0.030 3.970 22 C 0.175 3.825 23 N -0.306 5.306 24 N -0.051 5.051 25 N -0.194 5.194 26 H 0.498 0.502 27 N -0.256 5.256 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.270 0.730 34 H 0.150 0.850 35 H 0.178 0.822 36 H 0.186 0.814 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 8.573 12.308 20.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 N -0.689 5.689 4 C -0.446 4.446 5 H 0.110 0.890 6 C -0.208 4.208 7 N -0.532 5.532 8 Si 0.802 3.198 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.174 1.174 12 S 2.746 3.254 13 O -0.993 6.993 14 O -1.004 7.004 15 C -0.728 4.728 16 C -0.066 4.066 17 C -0.125 4.125 18 C -0.086 4.086 19 C -0.070 4.070 20 C -0.184 4.184 21 C 0.025 3.975 22 C -0.104 4.104 23 N -0.178 5.178 24 N -0.046 5.046 25 N -0.046 5.046 26 H 0.359 0.641 27 N -0.110 5.110 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.168 0.832 35 H 0.195 0.805 36 H 0.204 0.796 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.184 8.166 13.033 19.622 hybrid contribution 0.109 0.192 -0.429 0.483 sum -12.075 8.357 12.604 19.352 Atomic orbital electron populations 1.22127 0.95334 1.02188 1.01656 1.21329 0.94365 0.83272 1.02839 1.52818 1.77573 1.21300 1.17194 1.19316 1.43980 0.95253 0.86025 0.89044 1.26263 0.93850 0.97055 1.03600 1.70128 1.33099 1.18510 1.31484 0.85233 0.79816 0.77914 0.76884 1.19856 1.20970 1.17431 1.03991 0.74114 0.73780 0.73521 1.93349 1.86009 1.57367 1.62608 1.93352 1.55985 1.65905 1.85164 1.30932 1.22052 1.18200 1.01620 1.21365 0.91937 0.94790 0.98555 1.21936 0.97341 0.95322 0.97897 1.21774 0.98386 0.96639 0.91779 1.20437 0.91661 0.95610 0.99327 1.21276 1.04954 1.01793 0.90351 1.16902 0.91946 1.00213 0.88396 1.24191 0.94880 0.99630 0.91742 1.76128 1.05438 1.17703 1.18565 1.78813 1.19653 1.13328 0.92838 1.47974 1.07728 1.33756 1.15152 0.64137 1.74865 1.06461 1.21459 1.08169 0.93669 0.91515 0.90717 0.88803 0.93819 0.92099 0.83239 0.80512 0.79636 0.89865 0.87862 0.89410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 10.19 71.98 0.73 -5.01 16 2 C 0.11 5.24 5.96 86.38 0.52 5.75 16 3 N -0.86 -44.75 2.10 -343.44 -0.72 -45.47 16 4 C -0.31 -16.58 7.90 84.03 0.66 -15.92 16 5 H 0.09 4.71 7.82 -2.91 -0.02 4.68 16 6 C 0.00 -0.17 4.97 84.86 0.42 0.25 16 7 N -0.89 -49.95 11.38 21.65 0.25 -49.70 16 8 Si 0.98 40.50 29.61 68.60 2.03 42.53 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 12 S 2.65 141.09 4.00 -56.49 -0.23 140.86 16 13 O -1.00 -56.51 13.80 -128.00 -1.77 -58.28 16 14 O -1.01 -61.90 16.92 -128.00 -2.17 -64.06 16 15 C -0.64 -27.04 5.86 22.48 0.13 -26.91 16 16 C -0.05 -1.63 9.07 22.24 0.20 -1.43 16 17 C -0.11 -2.46 10.04 22.31 0.22 -2.23 16 18 C -0.07 -1.37 9.69 22.24 0.22 -1.15 16 19 C -0.07 -1.77 5.91 -19.66 -0.12 -1.89 16 20 C -0.13 -2.35 9.27 71.24 0.66 -1.69 16 21 C 0.03 1.13 5.87 -20.04 -0.12 1.01 16 22 C 0.18 6.90 7.50 137.39 1.03 7.94 16 23 N -0.31 -14.23 7.78 -52.18 -0.41 -14.63 16 24 N -0.05 -1.88 13.47 37.02 0.50 -1.38 16 25 N -0.19 -4.81 7.90 37.02 0.29 -4.51 16 26 H 0.50 5.57 8.96 -347.54 -3.12 2.45 16 27 N -0.26 -7.39 8.93 -52.13 -0.47 -7.86 16 28 H 0.04 1.59 7.66 -2.39 -0.02 1.57 16 29 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 4.87 5.41 -2.38 -0.01 4.86 16 32 H 0.04 2.18 6.92 -2.38 -0.02 2.16 16 33 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 34 H 0.15 5.28 6.29 -2.91 -0.02 5.26 16 35 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.19 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.18 8.09 -2.39 -0.02 1.16 16 39 H 0.09 1.83 5.06 -2.39 -0.01 1.81 16 Total: -1.00 -86.22 334.51 -0.11 -86.33 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -1.99 Total: 17.44 kcal Atomic # 6 Polarization: -45.82 SS G_CDS: 4.56 Total: -41.26 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -0.56 Total: -123.56 kcal Atomic # 8 Polarization: -118.41 SS G_CDS: -3.93 Total: -122.34 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.53 kcal Atomic # 16 Polarization: 141.09 SS G_CDS: -0.23 Total: 140.86 kcal Total: -86.22 -0.11 -86.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825395828.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.371 kcal (2) G-P(sol) polarization free energy of solvation -86.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds