Wall clock time and date at job start Tue Mar 31 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47148 * 2 1 4 4 C 1.46501 * 119.99842 * 87.03596 * 3 2 1 5 5 C 1.50698 * 109.47152 * 85.00038 * 4 3 2 6 6 H 1.07997 * 119.99564 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99768 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00046 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99622 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47066 * 60.00511 * 9 7 5 11 11 H 1.48503 * 109.46783 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46982 * 300.00051 * 9 7 5 13 13 S 1.65594 * 120.00032 * 267.03897 * 3 2 1 14 14 O 1.42103 * 106.40276 * 209.01944 * 13 3 2 15 15 O 1.42106 * 106.40109 * 341.93596 * 13 3 2 16 16 C 1.76199 * 107.22308 * 95.47665 * 13 3 2 17 17 C 1.38047 * 120.05653 * 13.53403 * 16 13 3 18 18 C 1.38294 * 120.11682 * 179.97438 * 17 16 13 19 19 C 1.38335 * 120.23793 * 359.97438 * 18 17 16 20 20 C 1.38008 * 120.11512 * 359.97438 * 19 18 17 21 21 C 1.39275 * 120.06428 * 193.25609 * 16 13 3 22 22 C 1.48471 * 120.11284 * 0.02562 * 21 16 13 23 23 N 1.34037 * 126.67550 * 353.50396 * 22 21 16 24 24 N 1.28987 * 107.27052 * 179.83552 * 23 22 21 25 25 N 1.28728 * 108.94162 * 0.42943 * 24 23 22 26 26 H 0.97001 * 125.34724 * 179.72229 * 25 24 23 27 27 N 1.28871 * 109.31582 * 359.72641 * 25 24 23 28 28 H 1.09000 * 109.46723 * 305.18826 * 1 2 3 29 29 H 1.08994 * 109.46958 * 65.19048 * 1 2 3 30 30 H 1.09001 * 109.47123 * 185.19472 * 1 2 3 31 31 H 1.08995 * 109.46517 * 239.99751 * 2 1 3 32 32 H 1.08997 * 109.46894 * 119.99873 * 2 1 3 33 33 H 1.09008 * 109.46612 * 205.00195 * 4 3 2 34 34 H 1.09005 * 109.47309 * 324.99648 * 4 3 2 35 35 H 0.97007 * 120.00012 * 179.97438 * 8 7 5 36 36 H 1.08002 * 119.94483 * 359.97438 * 17 16 13 37 37 H 1.08010 * 119.88064 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.94351 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.05613 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2007 2.0936 1.2671 5 6 3.5571 1.7667 1.8365 6 1 4.2171 1.0951 1.3077 7 6 3.9554 2.3251 3.0326 8 7 3.1514 3.1426 3.6767 9 14 5.6371 1.9204 3.7381 10 1 6.6902 2.3390 2.7785 11 1 5.8218 2.6425 5.0226 12 1 5.7357 0.4577 3.9745 13 16 2.3643 2.1371 -1.4322 14 8 3.3858 3.0837 -1.1498 15 8 2.5035 1.1102 -2.4045 16 6 0.9383 3.0655 -1.8897 17 6 -0.0680 3.2852 -0.9706 18 6 -1.1875 4.0141 -1.3282 19 6 -1.3052 4.5273 -2.6074 20 6 -0.3046 4.3145 -3.5337 21 6 0.8269 3.5840 -3.1776 22 6 1.9087 3.3557 -4.1686 23 7 3.0969 2.7799 -3.9383 24 7 3.7408 2.7701 -5.0559 25 7 3.0115 3.3200 -5.9631 26 1 3.2664 3.4408 -6.8912 27 7 1.8895 3.6849 -5.4448 28 1 -0.3633 0.5922 0.8399 29 1 -0.3633 0.4312 -0.9328 30 1 -0.3633 -1.0235 0.0930 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1285 3.1674 1.0937 34 1 1.4274 1.7865 1.9712 35 1 3.4315 3.5351 4.5184 36 1 0.0191 2.8870 0.0296 37 1 -1.9727 4.1833 -0.6061 38 1 -2.1814 5.0963 -2.8815 39 1 -0.3973 4.7160 -4.5320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825419041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:45 Heat of formation + Delta-G solvation = 98.412646 kcal Electronic energy + Delta-G solvation = -27966.248466 eV Core-core repulsion = 24040.130179 eV Total energy + Delta-G solvation = -3926.118287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.52205 -39.23362 -36.29543 -36.11301 -35.02391 -34.35218 -33.68796 -32.61334 -31.31743 -30.64205 -29.94638 -26.55914 -25.02753 -24.66656 -23.11549 -22.86371 -21.94978 -21.37865 -19.41516 -18.29008 -17.52175 -17.19144 -16.65132 -16.35238 -16.12519 -15.46488 -15.04173 -14.68593 -14.39681 -14.19686 -13.92381 -13.68060 -13.24420 -13.14555 -12.82708 -12.54271 -12.15059 -12.03037 -11.92079 -11.68462 -11.55826 -11.45003 -11.15315 -11.09299 -11.04234 -11.01227 -10.89080 -10.77813 -10.36528 -10.33296 -10.22477 -9.89141 -9.69393 -9.32889 -8.85243 -8.38204 -8.04510 -6.00834 -4.03543 0.43521 1.00755 1.17092 1.19604 2.15188 2.27968 3.39699 3.41995 3.42759 3.48995 3.52949 3.82492 4.04339 4.44988 4.51085 4.81907 4.84357 5.02441 5.22685 5.30419 5.32507 5.34986 5.46266 5.52379 5.57501 5.76222 5.76675 5.82672 5.99742 6.09353 6.13230 6.23116 6.30630 6.33374 6.61425 6.69668 6.70933 7.21893 7.43166 7.65370 7.97589 8.06228 8.26137 8.98631 9.61300 11.07998 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.004742 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.444217 B = 5903.762338 C = 6735.126134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 N -0.988 5.988 4 C 0.252 3.748 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.276 1.276 13 S 2.694 3.306 14 O -0.928 6.928 15 O -0.957 6.957 16 C -0.634 4.634 17 C -0.028 4.028 18 C -0.118 4.118 19 C -0.081 4.081 20 C -0.101 4.101 21 C 0.073 3.927 22 C 0.193 3.807 23 N -0.249 5.249 24 N -0.028 5.028 25 N -0.229 5.229 26 H 0.476 0.524 27 N -0.284 5.284 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.263 0.737 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.676 0.987 -15.838 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.011 4.011 3 N -0.829 5.829 4 C 0.130 3.870 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.202 1.202 13 S 2.778 3.222 14 O -0.918 6.918 15 O -0.946 6.946 16 C -0.717 4.717 17 C -0.047 4.047 18 C -0.137 4.137 19 C -0.099 4.099 20 C -0.122 4.122 21 C 0.069 3.931 22 C -0.087 4.087 23 N -0.122 5.122 24 N -0.024 5.024 25 N -0.075 5.075 26 H 0.330 0.670 27 N -0.136 5.136 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.167 0.833 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.349 0.867 -16.335 18.841 hybrid contribution -0.139 0.451 0.059 0.475 sum -9.488 1.317 -16.276 18.885 Atomic orbital electron populations 1.22325 0.97473 1.01985 1.01726 1.21193 0.92919 0.83063 1.03890 1.57636 1.81238 1.21371 1.22660 1.19142 0.97626 0.91343 0.78894 1.21438 1.01092 1.28145 1.05682 0.91981 1.24904 0.97467 0.94837 0.96729 1.69900 1.36422 1.30928 1.16493 0.86594 0.84527 0.78438 0.78158 1.19911 1.21258 1.20163 1.02409 0.73574 0.73961 0.72233 1.93603 1.51041 1.63181 1.83954 1.93493 1.84983 1.56707 1.59374 1.31761 1.22883 1.16973 1.00073 1.21096 0.91277 0.93721 0.98589 1.21482 0.98230 0.97309 0.96704 1.21298 0.98093 0.97398 0.93151 1.21189 0.92502 0.97994 1.00497 1.16549 0.90586 0.97518 0.88466 1.23813 0.94835 0.99768 0.90312 1.76056 1.03593 1.15693 1.16908 1.78938 1.18958 1.12110 0.92407 1.47739 1.08172 1.37099 1.14487 0.66956 1.74759 1.07032 1.21914 1.09888 0.91837 0.93380 0.91908 0.90256 0.89313 0.94523 0.94346 0.92699 0.83336 0.84552 0.84662 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 10.18 37.16 0.38 -2.10 16 2 C 0.12 2.04 6.36 -4.04 -0.03 2.01 16 3 N -0.99 -20.94 1.97 -115.66 -0.23 -21.17 16 4 C 0.25 6.20 4.13 -5.19 -0.02 6.18 16 5 C -0.52 -14.72 9.38 -34.44 -0.32 -15.04 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 9 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 S 2.69 59.21 3.97 -107.50 -0.43 58.78 16 14 O -0.93 -24.20 16.75 -57.17 -0.96 -25.16 16 15 O -0.96 -21.40 13.87 -57.17 -0.79 -22.19 16 16 C -0.63 -11.53 5.85 -39.27 -0.23 -11.76 16 17 C -0.03 -0.44 9.42 -39.63 -0.37 -0.81 16 18 C -0.12 -1.40 10.04 -39.52 -0.40 -1.79 16 19 C -0.08 -0.86 10.03 -39.63 -0.40 -1.26 16 20 C -0.10 -1.27 9.70 -39.27 -0.38 -1.65 16 21 C 0.07 1.22 5.87 -104.89 -0.62 0.61 16 22 C 0.19 3.36 7.61 -156.31 -1.19 2.17 16 23 N -0.25 -4.96 7.81 32.16 0.25 -4.71 16 24 N -0.03 -0.45 13.47 60.35 0.81 0.36 16 25 N -0.23 -2.60 7.90 60.35 0.48 -2.13 16 26 H 0.48 2.49 8.96 -340.37 -3.05 -0.56 16 27 N -0.28 -3.87 12.10 32.17 0.39 -3.48 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.65 8.01 -51.93 -0.42 0.23 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.36 6.92 -51.93 -0.36 1.00 16 32 H 0.09 1.56 8.09 -51.93 -0.42 1.14 16 33 H 0.04 0.96 7.75 -51.92 -0.40 0.56 16 34 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.15 2.27 6.40 -52.49 -0.34 1.93 16 37 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.14 1.39 7.90 -52.49 -0.41 0.98 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -37.26 346.70 -10.27 -47.53 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.06 Total: -3.00 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -3.67 Total: -21.78 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: 2.44 Total: -56.37 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.75 Total: -47.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 59.21 SS G_CDS: -0.43 Total: 58.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -37.26 -10.27 -47.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825419041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.941 kcal (2) G-P(sol) polarization free energy of solvation -37.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds