Wall clock time and date at job start Tue Mar 31 2020 20:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.47148 * 2 1 4 4 C 1.46501 * 119.99842 * 87.03596 * 3 2 1 5 5 C 1.50698 * 109.47152 * 85.00038 * 4 3 2 6 6 H 1.07997 * 119.99564 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99768 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00046 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99622 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47066 * 60.00511 * 9 7 5 11 11 H 1.48503 * 109.46783 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46982 * 300.00051 * 9 7 5 13 13 S 1.65594 * 120.00032 * 267.03897 * 3 2 1 14 14 O 1.42103 * 106.40276 * 209.01944 * 13 3 2 15 15 O 1.42106 * 106.40109 * 341.93596 * 13 3 2 16 16 C 1.76199 * 107.22308 * 95.47665 * 13 3 2 17 17 C 1.38047 * 120.05653 * 13.53403 * 16 13 3 18 18 C 1.38294 * 120.11682 * 179.97438 * 17 16 13 19 19 C 1.38335 * 120.23793 * 359.97438 * 18 17 16 20 20 C 1.38008 * 120.11512 * 359.97438 * 19 18 17 21 21 C 1.39275 * 120.06428 * 193.25609 * 16 13 3 22 22 C 1.48471 * 120.11284 * 0.02562 * 21 16 13 23 23 N 1.34037 * 126.67550 * 353.50396 * 22 21 16 24 24 N 1.28987 * 107.27052 * 179.83552 * 23 22 21 25 25 N 1.28728 * 108.94162 * 0.42943 * 24 23 22 26 26 H 0.97001 * 125.34724 * 179.72229 * 25 24 23 27 27 N 1.28871 * 109.31582 * 359.72641 * 25 24 23 28 28 H 1.09000 * 109.46723 * 305.18826 * 1 2 3 29 29 H 1.08994 * 109.46958 * 65.19048 * 1 2 3 30 30 H 1.09001 * 109.47123 * 185.19472 * 1 2 3 31 31 H 1.08995 * 109.46517 * 239.99751 * 2 1 3 32 32 H 1.08997 * 109.46894 * 119.99873 * 2 1 3 33 33 H 1.09008 * 109.46612 * 205.00195 * 4 3 2 34 34 H 1.09005 * 109.47309 * 324.99648 * 4 3 2 35 35 H 0.97007 * 120.00012 * 179.97438 * 8 7 5 36 36 H 1.08002 * 119.94483 * 359.97438 * 17 16 13 37 37 H 1.08010 * 119.88064 * 179.97438 * 18 17 16 38 38 H 1.08003 * 119.94351 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.05613 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2007 2.0936 1.2671 5 6 3.5571 1.7667 1.8365 6 1 4.2171 1.0951 1.3077 7 6 3.9554 2.3251 3.0326 8 7 3.1514 3.1426 3.6767 9 14 5.6371 1.9204 3.7381 10 1 6.6902 2.3390 2.7785 11 1 5.8218 2.6425 5.0226 12 1 5.7357 0.4577 3.9745 13 16 2.3643 2.1371 -1.4322 14 8 3.3858 3.0837 -1.1498 15 8 2.5035 1.1102 -2.4045 16 6 0.9383 3.0655 -1.8897 17 6 -0.0680 3.2852 -0.9706 18 6 -1.1875 4.0141 -1.3282 19 6 -1.3052 4.5273 -2.6074 20 6 -0.3046 4.3145 -3.5337 21 6 0.8269 3.5840 -3.1776 22 6 1.9087 3.3557 -4.1686 23 7 3.0969 2.7799 -3.9383 24 7 3.7408 2.7701 -5.0559 25 7 3.0115 3.3200 -5.9631 26 1 3.2664 3.4408 -6.8912 27 7 1.8895 3.6849 -5.4448 28 1 -0.3633 0.5922 0.8399 29 1 -0.3633 0.4312 -0.9328 30 1 -0.3633 -1.0235 0.0930 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1285 3.1674 1.0937 34 1 1.4274 1.7865 1.9712 35 1 3.4315 3.5351 4.5184 36 1 0.0191 2.8870 0.0296 37 1 -1.9727 4.1833 -0.6061 38 1 -2.1814 5.0963 -2.8815 39 1 -0.3973 4.7160 -4.5320 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825419041.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:45 Heat of formation + Delta-G solvation = 70.315658 kcal Electronic energy + Delta-G solvation = -27967.466843 eV Core-core repulsion = 24040.130179 eV Total energy + Delta-G solvation = -3927.336664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.69295 -40.28643 -38.01881 -37.77295 -36.70277 -35.62754 -34.85545 -34.66647 -32.39444 -31.72349 -31.51021 -28.47432 -26.17087 -25.83639 -24.93205 -24.00012 -23.36858 -22.65980 -20.56496 -19.71667 -19.08709 -18.37618 -18.27666 -18.12400 -17.44474 -17.19818 -16.33713 -16.19153 -15.76671 -15.44662 -15.41263 -14.95706 -14.64208 -14.51953 -14.33109 -13.84403 -13.64731 -13.48047 -13.33242 -13.25405 -12.99695 -12.87799 -12.73139 -12.69696 -12.61881 -12.47052 -12.33389 -12.17498 -12.11689 -12.01486 -11.72479 -11.65683 -11.52347 -10.55481 -10.40693 -9.91111 -9.79217 -8.17006 -6.26961 -0.68863 -0.43620 -0.07697 0.06010 1.08752 1.26115 1.40402 1.44624 1.51553 2.06317 2.42746 2.46218 2.51808 2.87141 2.94101 3.14279 3.67963 3.81710 3.86528 4.02300 4.05607 4.20428 4.25091 4.32057 4.47278 4.48988 4.53403 4.73542 4.79181 5.00106 5.05790 5.15575 5.17116 5.18371 5.27296 5.42476 5.49814 5.54376 5.74512 5.75867 5.98203 6.16025 6.79341 6.86742 7.40750 8.90523 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.004742 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.444217 B = 5903.762338 C = 6735.126134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.993 5.993 4 C 0.270 3.730 5 C -0.548 4.548 6 H 0.048 0.952 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.263 1.263 13 S 2.697 3.303 14 O -0.989 6.989 15 O -0.974 6.974 16 C -0.655 4.655 17 C -0.044 4.044 18 C -0.109 4.109 19 C -0.057 4.057 20 C -0.093 4.093 21 C 0.046 3.954 22 C 0.172 3.828 23 N -0.309 5.309 24 N -0.046 5.046 25 N -0.189 5.189 26 H 0.500 0.500 27 N -0.260 5.260 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.015 0.985 34 H 0.042 0.958 35 H 0.268 0.732 36 H 0.140 0.860 37 H 0.176 0.824 38 H 0.190 0.810 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 1.871 -17.029 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.833 5.833 4 C 0.146 3.854 5 C -0.588 4.588 6 H 0.066 0.934 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.187 1.187 13 S 2.789 3.211 14 O -0.979 6.979 15 O -0.964 6.964 16 C -0.745 4.745 17 C -0.063 4.063 18 C -0.128 4.128 19 C -0.075 4.075 20 C -0.114 4.114 21 C 0.041 3.959 22 C -0.108 4.108 23 N -0.181 5.181 24 N -0.041 5.041 25 N -0.041 5.041 26 H 0.361 0.639 27 N -0.114 5.114 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.193 0.807 38 H 0.207 0.793 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.211 1.684 -17.527 21.428 hybrid contribution 0.641 0.260 0.237 0.731 sum -11.571 1.944 -17.290 20.895 Atomic orbital electron populations 1.22250 0.94268 1.03937 1.02135 1.21444 0.95675 0.81229 1.03594 1.57452 1.81949 1.22664 1.21212 1.18717 0.96124 0.90418 0.80096 1.21781 1.02591 1.28222 1.06166 0.93398 1.25646 1.00863 0.94740 0.97075 1.69972 1.37843 1.31424 1.16852 0.85736 0.80063 0.79091 0.77621 1.20808 1.19785 1.18715 1.01625 0.74167 0.73475 0.71831 1.93514 1.55177 1.64506 1.84710 1.93444 1.85999 1.57493 1.59435 1.30930 1.22064 1.19446 1.02043 1.21221 0.92257 0.94966 0.97820 1.21951 0.97344 0.95280 0.98247 1.21942 0.98569 0.95327 0.91649 1.21628 0.91125 0.96316 1.02320 1.16884 0.92079 0.99128 0.87818 1.24161 0.94722 1.00325 0.91631 1.76016 1.05375 1.18057 1.18671 1.78835 1.19474 1.13239 0.92551 1.47822 1.06943 1.34267 1.15109 0.63922 1.74705 1.07180 1.21137 1.08347 0.91632 0.92809 0.89028 0.90332 0.89799 0.96689 0.93971 0.92329 0.84196 0.80687 0.79299 0.81453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 10.18 71.98 0.73 -3.87 16 2 C 0.11 3.85 6.36 86.38 0.55 4.40 16 3 N -0.99 -44.28 1.97 -519.83 -1.03 -45.31 16 4 C 0.27 13.94 4.13 85.63 0.35 14.29 16 5 C -0.55 -32.13 9.38 25.60 0.24 -31.89 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.02 0.95 5.46 84.66 0.46 1.41 16 8 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 9 Si 0.95 45.85 29.54 68.60 2.03 47.87 16 10 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 13 S 2.70 125.77 3.97 -56.49 -0.22 125.54 16 14 O -0.99 -55.67 16.75 -128.00 -2.14 -57.81 16 15 O -0.97 -46.29 13.87 -128.00 -1.78 -48.06 16 16 C -0.66 -24.23 5.85 22.47 0.13 -24.10 16 17 C -0.04 -1.31 9.42 22.24 0.21 -1.10 16 18 C -0.11 -2.16 10.04 22.31 0.22 -1.94 16 19 C -0.06 -0.91 10.03 22.24 0.22 -0.69 16 20 C -0.09 -2.02 9.70 22.47 0.22 -1.80 16 21 C 0.05 1.49 5.87 -20.04 -0.12 1.37 16 22 C 0.17 6.01 7.61 137.39 1.05 7.06 16 23 N -0.31 -12.84 7.81 -52.18 -0.41 -13.25 16 24 N -0.05 -1.51 13.47 37.02 0.50 -1.01 16 25 N -0.19 -4.10 7.90 37.02 0.29 -3.81 16 26 H 0.50 4.30 8.96 -347.54 -3.12 1.19 16 27 N -0.26 -6.74 12.10 -52.13 -0.63 -7.37 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.08 2.83 6.92 -2.39 -0.02 2.82 16 32 H 0.08 3.07 8.09 -2.39 -0.02 3.05 16 33 H 0.02 0.84 7.75 -2.38 -0.02 0.82 16 34 H 0.04 2.12 8.11 -2.38 -0.02 2.10 16 35 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 36 H 0.14 4.34 6.40 -2.91 -0.02 4.32 16 37 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.17 2.59 7.90 -2.91 -0.02 2.56 16 Total: -1.00 -87.44 346.70 -0.84 -88.28 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -2.01 Total: 5.72 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 4.27 Total: -36.85 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -0.99 Total: -124.68 kcal Atomic # 8 Polarization: -101.96 SS G_CDS: -3.92 Total: -105.87 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 125.77 SS G_CDS: -0.22 Total: 125.54 kcal Total: -87.44 -0.84 -88.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825419041.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.592 kcal (2) G-P(sol) polarization free energy of solvation -87.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds