Wall clock time and date at job start Tue Mar 31 2020 20:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 119.99968 * 2 1 4 4 H 1.08007 * 120.00170 * 203.04561 * 3 2 1 5 5 C 1.38813 * 120.00006 * 23.04909 * 3 2 1 6 6 N 1.31614 * 119.99887 * 12.92255 * 5 3 2 7 7 Si 1.86802 * 119.99935 * 192.92831 * 5 3 2 8 8 H 1.48493 * 109.47446 * 59.99683 * 7 5 3 9 9 H 1.48498 * 109.47164 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47001 * 299.99647 * 7 5 3 11 11 C 1.46503 * 120.00160 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47232 * 89.99707 * 11 2 1 13 13 S 1.81398 * 109.47208 * 180.02562 * 12 11 2 14 14 O 1.42095 * 110.54263 * 68.37318 * 13 12 11 15 15 O 1.42107 * 110.54031 * 291.62476 * 13 12 11 16 16 C 1.76195 * 104.45168 * 180.02562 * 13 12 11 17 17 C 1.38335 * 119.93761 * 269.97690 * 16 13 12 18 18 C 1.38300 * 120.23644 * 180.02562 * 17 16 13 19 19 C 1.38049 * 120.11656 * 0.02562 * 18 17 16 20 20 C 1.39282 * 119.88122 * 359.97438 * 19 18 17 21 21 C 1.48465 * 120.11685 * 180.02562 * 20 19 18 22 22 N 1.34050 * 126.67131 * 179.68995 * 21 20 19 23 23 N 1.28985 * 107.26361 * 179.83393 * 22 21 20 24 24 N 1.28729 * 108.94332 * 0.43791 * 23 22 21 25 25 H 0.97003 * 125.33766 * 179.74388 * 24 23 22 26 26 N 1.28863 * 109.31873 * 359.71959 * 24 23 22 27 27 C 1.38012 * 119.94406 * 89.99602 * 16 13 12 28 28 H 1.08997 * 109.47167 * 275.12117 * 1 2 3 29 29 H 1.08996 * 109.47173 * 35.11780 * 1 2 3 30 30 H 1.08996 * 109.47356 * 155.12243 * 1 2 3 31 31 H 0.97003 * 119.99911 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.46720 * 330.00039 * 11 2 1 33 33 H 1.09000 * 109.47374 * 210.00072 * 11 2 1 34 34 H 1.09001 * 109.46997 * 60.00502 * 12 11 2 35 35 H 1.09000 * 109.47239 * 300.00448 * 12 11 2 36 36 H 1.08004 * 119.88774 * 0.04625 * 17 16 13 37 37 H 1.08001 * 119.94385 * 180.02562 * 18 17 16 38 38 H 1.08002 * 120.06180 * 180.27721 * 19 18 17 39 39 H 1.08000 * 120.05523 * 359.96044 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4707 6 7 0.4118 2.2596 1.1458 7 14 2.3159 4.0073 0.1456 8 1 2.4196 4.2281 -1.3191 9 1 1.4737 5.0719 0.7478 10 1 3.6719 4.0475 0.7495 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 16 3.3589 -3.2811 -1.4439 14 8 2.5365 -4.3313 -0.9541 15 8 4.6795 -3.0951 -0.9533 16 6 3.5794 -3.6608 -3.1503 17 6 2.6276 -4.4089 -3.8197 18 6 2.7947 -4.7110 -5.1589 19 6 3.9137 -4.2672 -5.8347 20 6 4.8751 -3.5136 -5.1655 21 6 6.0802 -3.0332 -5.8873 22 7 7.0789 -2.2986 -5.3776 23 7 7.9291 -2.0975 -6.3265 24 7 7.4996 -2.6643 -7.3995 25 1 7.9528 -2.6584 -8.2571 26 7 6.3735 -3.2413 -7.1554 27 6 4.7015 -3.2116 -3.8166 28 1 -0.3633 0.0917 1.0235 29 1 -0.3633 0.8406 -0.5912 30 1 -0.3634 -0.9323 -0.4323 31 1 -0.0154 3.0662 1.4744 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5133 34 1 3.0416 -0.9500 -1.9567 35 1 1.5001 -1.8399 -1.9571 36 1 1.7507 -4.7582 -3.2948 37 1 2.0485 -5.2951 -5.6770 38 1 4.0411 -4.4998 -6.8816 39 1 5.4437 -2.6273 -3.2930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000825888212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:04 Heat of formation + Delta-G solvation = 111.569907 kcal Electronic energy + Delta-G solvation = -25942.441640 eV Core-core repulsion = 22016.893895 eV Total energy + Delta-G solvation = -3925.547745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.76578 -39.48547 -36.78989 -36.02634 -35.62286 -34.73833 -33.95603 -32.18003 -31.56511 -30.90681 -29.55090 -25.99323 -25.21264 -24.85188 -24.14170 -23.05264 -22.13366 -20.71137 -19.62138 -18.74994 -17.85568 -17.44953 -16.86499 -16.31830 -15.95384 -15.89386 -15.31665 -14.94670 -14.83583 -14.36714 -13.94392 -13.89647 -13.62713 -13.40676 -12.91156 -12.69253 -12.64002 -12.44860 -11.85514 -11.76941 -11.70314 -11.58923 -11.54702 -11.45371 -11.34921 -11.13165 -10.97868 -10.78343 -10.71576 -10.52180 -10.27366 -10.03307 -9.92791 -9.57593 -9.08278 -8.65482 -6.91469 -5.84884 -3.30879 0.21216 0.38191 0.73480 0.90494 1.90892 1.97653 3.10144 3.28189 3.31908 3.35367 3.40210 3.41553 3.85861 4.12112 4.35115 4.42530 4.62588 4.68015 4.73565 5.03157 5.05979 5.17357 5.18121 5.31146 5.37670 5.46490 5.49267 5.58709 5.81429 5.90698 5.97544 6.01902 6.04479 6.27688 6.44411 6.52934 6.66218 7.25114 7.62397 7.71510 7.83124 8.24880 9.09157 9.70062 10.17454 11.19113 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003215 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.696703 B = 8705.853823 C =10260.612162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.153 3.847 2 N -0.578 5.578 3 C -0.269 4.269 4 H 0.074 0.926 5 C 0.008 3.992 6 N -0.901 5.901 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.157 3.843 12 C -0.602 4.602 13 S 2.471 3.529 14 O -0.946 6.946 15 O -0.941 6.941 16 C -0.655 4.655 17 C -0.004 4.004 18 C -0.142 4.142 19 C -0.034 4.034 20 C -0.042 4.042 21 C 0.221 3.779 22 N -0.261 5.261 23 N -0.045 5.045 24 N -0.228 5.228 25 H 0.476 0.524 26 N -0.296 5.296 27 C 0.019 3.981 28 H 0.039 0.961 29 H 0.044 0.956 30 H 0.004 0.996 31 H 0.256 0.744 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.148 -13.673 -18.242 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.300 5.300 3 C -0.399 4.399 4 H 0.092 0.908 5 C -0.192 4.192 6 N -0.544 5.544 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.215 1.215 10 H -0.205 1.205 11 C 0.026 3.974 12 C -0.738 4.738 13 S 2.651 3.349 14 O -0.943 6.943 15 O -0.937 6.937 16 C -0.739 4.739 17 C -0.024 4.024 18 C -0.161 4.161 19 C -0.055 4.055 20 C -0.047 4.047 21 C -0.058 4.058 22 N -0.134 5.134 23 N -0.040 5.040 24 N -0.074 5.074 25 H 0.330 0.670 26 N -0.148 5.148 27 C -0.001 4.001 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 7.907 -13.714 -17.549 23.634 hybrid contribution 0.069 1.112 -1.809 2.125 sum 7.977 -12.603 -19.359 24.438 Atomic orbital electron populations 1.20954 0.82101 0.95929 1.00183 1.43917 1.02121 1.00243 1.83705 1.19254 0.98540 0.85455 1.36664 0.90802 1.25061 0.97691 0.98787 0.97614 1.70062 1.19189 1.27776 1.37409 0.86276 0.78691 0.83209 0.78061 1.20914 1.21471 1.20521 1.20503 0.98195 0.90383 0.88307 1.31426 1.13148 1.17046 1.12216 1.06845 0.76026 0.78345 0.73702 1.93523 1.69979 1.53369 1.77419 1.93551 1.35862 1.87032 1.77293 1.31015 1.02976 1.12485 1.27423 1.21203 0.96534 0.90457 0.94200 1.21234 0.98257 1.01903 0.94723 1.21421 0.91758 0.92164 1.00122 1.17262 0.91229 1.03029 0.93132 1.23594 0.96901 0.97974 0.87366 1.76183 1.00723 1.15057 1.21467 1.78967 1.20622 1.14359 0.90060 1.47728 1.13183 1.32726 1.13751 0.67009 1.74871 1.02121 1.19963 1.17829 1.21008 0.94550 0.92415 0.92164 0.94268 0.93696 0.97785 0.93359 0.92491 0.91341 0.84882 0.85574 0.83415 0.84221 0.84366 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.60 8.98 59.85 0.54 4.14 16 2 N -0.58 -14.07 2.92 -181.12 -0.53 -14.60 16 3 C -0.27 -7.19 9.65 -15.06 -0.15 -7.34 16 4 H 0.07 1.90 7.86 -52.48 -0.41 1.49 16 5 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16 6 N -0.90 -25.50 10.71 55.49 0.59 -24.91 16 7 Si 0.91 21.33 29.57 -169.99 -5.03 16.31 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 12 C -0.60 -9.39 6.30 37.16 0.23 -9.16 16 13 S 2.47 36.59 5.16 -107.50 -0.55 36.04 16 14 O -0.95 -15.65 17.12 -57.54 -0.99 -16.63 16 15 O -0.94 -16.59 17.12 -57.54 -0.98 -17.58 16 16 C -0.66 -8.35 5.65 -39.63 -0.22 -8.58 16 17 C 0.00 -0.05 9.47 -39.52 -0.37 -0.42 16 18 C -0.14 -1.25 10.03 -39.63 -0.40 -1.65 16 19 C -0.03 -0.32 9.70 -39.26 -0.38 -0.70 16 20 C -0.04 -0.50 5.88 -104.89 -0.62 -1.11 16 21 C 0.22 2.64 7.94 -156.31 -1.24 1.40 16 22 N -0.26 -3.44 12.23 32.16 0.39 -3.05 16 23 N -0.04 -0.48 13.47 60.35 0.81 0.33 16 24 N -0.23 -1.67 7.90 60.35 0.48 -1.19 16 25 H 0.48 1.03 8.96 -340.37 -3.05 -2.03 16 26 N -0.30 -2.84 12.08 32.17 0.39 -2.45 16 27 C 0.02 0.25 9.12 -39.26 -0.36 -0.11 16 28 H 0.04 1.00 7.34 -51.93 -0.38 0.61 16 29 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 30 H 0.00 0.07 8.03 -51.93 -0.42 -0.35 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 34 H 0.13 2.03 8.14 -51.92 -0.42 1.61 16 35 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.15 1.35 7.56 -52.48 -0.40 0.95 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 0.99 7.88 -52.49 -0.41 0.58 16 39 H 0.16 2.06 7.40 -52.49 -0.39 1.67 16 LS Contribution 354.22 15.07 5.34 5.34 Total: -1.00 -35.94 354.22 -10.24 -46.17 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -7.08 Total: -3.47 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.08 Total: -20.31 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 2.14 Total: -45.86 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.97 Total: -34.21 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 36.59 SS G_CDS: -0.55 Total: 36.04 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.94 -10.24 -46.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825888212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.744 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds