Wall clock time and date at job start Tue Mar 31 2020 20:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 119.99968 * 2 1 4 4 H 1.08007 * 120.00170 * 203.04561 * 3 2 1 5 5 C 1.38813 * 120.00006 * 23.04909 * 3 2 1 6 6 N 1.31614 * 119.99887 * 12.92255 * 5 3 2 7 7 Si 1.86802 * 119.99935 * 192.92831 * 5 3 2 8 8 H 1.48493 * 109.47446 * 59.99683 * 7 5 3 9 9 H 1.48498 * 109.47164 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47001 * 299.99647 * 7 5 3 11 11 C 1.46503 * 120.00160 * 180.02562 * 2 1 3 12 12 C 1.52999 * 109.47232 * 89.99707 * 11 2 1 13 13 S 1.81398 * 109.47208 * 180.02562 * 12 11 2 14 14 O 1.42095 * 110.54263 * 68.37318 * 13 12 11 15 15 O 1.42107 * 110.54031 * 291.62476 * 13 12 11 16 16 C 1.76195 * 104.45168 * 180.02562 * 13 12 11 17 17 C 1.38335 * 119.93761 * 269.97690 * 16 13 12 18 18 C 1.38300 * 120.23644 * 180.02562 * 17 16 13 19 19 C 1.38049 * 120.11656 * 0.02562 * 18 17 16 20 20 C 1.39282 * 119.88122 * 359.97438 * 19 18 17 21 21 C 1.48465 * 120.11685 * 180.02562 * 20 19 18 22 22 N 1.34050 * 126.67131 * 179.68995 * 21 20 19 23 23 N 1.28985 * 107.26361 * 179.83393 * 22 21 20 24 24 N 1.28729 * 108.94332 * 0.43791 * 23 22 21 25 25 H 0.97003 * 125.33766 * 179.74388 * 24 23 22 26 26 N 1.28863 * 109.31873 * 359.71959 * 24 23 22 27 27 C 1.38012 * 119.94406 * 89.99602 * 16 13 12 28 28 H 1.08997 * 109.47167 * 275.12117 * 1 2 3 29 29 H 1.08996 * 109.47173 * 35.11780 * 1 2 3 30 30 H 1.08996 * 109.47356 * 155.12243 * 1 2 3 31 31 H 0.97003 * 119.99911 * 180.02562 * 6 5 3 32 32 H 1.09001 * 109.46720 * 330.00039 * 11 2 1 33 33 H 1.09000 * 109.47374 * 210.00072 * 11 2 1 34 34 H 1.09001 * 109.46997 * 60.00502 * 12 11 2 35 35 H 1.09000 * 109.47239 * 300.00448 * 12 11 2 36 36 H 1.08004 * 119.88774 * 0.04625 * 17 16 13 37 37 H 1.08001 * 119.94385 * 180.02562 * 18 17 16 38 38 H 1.08002 * 120.06180 * 180.27721 * 19 18 17 39 39 H 1.08000 * 120.05523 * 359.96044 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4707 6 7 0.4118 2.2596 1.1458 7 14 2.3159 4.0073 0.1456 8 1 2.4196 4.2281 -1.3191 9 1 1.4737 5.0719 0.7478 10 1 3.6719 4.0475 0.7495 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 16 3.3589 -3.2811 -1.4439 14 8 2.5365 -4.3313 -0.9541 15 8 4.6795 -3.0951 -0.9533 16 6 3.5794 -3.6608 -3.1503 17 6 2.6276 -4.4089 -3.8197 18 6 2.7947 -4.7110 -5.1589 19 6 3.9137 -4.2672 -5.8347 20 6 4.8751 -3.5136 -5.1655 21 6 6.0802 -3.0332 -5.8873 22 7 7.0789 -2.2986 -5.3776 23 7 7.9291 -2.0975 -6.3265 24 7 7.4996 -2.6643 -7.3995 25 1 7.9528 -2.6584 -8.2571 26 7 6.3735 -3.2413 -7.1554 27 6 4.7015 -3.2116 -3.8166 28 1 -0.3633 0.0917 1.0235 29 1 -0.3633 0.8406 -0.5912 30 1 -0.3634 -0.9323 -0.4323 31 1 -0.0154 3.0662 1.4744 32 1 1.6084 -2.0286 0.5129 33 1 3.1499 -1.1386 0.5133 34 1 3.0416 -0.9500 -1.9567 35 1 1.5001 -1.8399 -1.9571 36 1 1.7507 -4.7582 -3.2948 37 1 2.0485 -5.2951 -5.6770 38 1 4.0411 -4.4998 -6.8816 39 1 5.4437 -2.6273 -3.2930 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825888212.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:02 Heat of formation + Delta-G solvation = 84.642460 kcal Electronic energy + Delta-G solvation = -25943.609302 eV Core-core repulsion = 22016.893895 eV Total energy + Delta-G solvation = -3926.715407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.55027 -40.31516 -38.12460 -37.79513 -36.96870 -35.53827 -34.76533 -34.00126 -32.41403 -31.72250 -31.25414 -27.93630 -26.04419 -25.75685 -25.66448 -24.01612 -22.99293 -22.39925 -20.40097 -19.86352 -18.99171 -18.67370 -18.22652 -17.48411 -17.09120 -16.96980 -16.67859 -16.28461 -15.99016 -15.57377 -15.30262 -15.17112 -14.71920 -14.60235 -14.33835 -14.28614 -13.48241 -13.33259 -13.26675 -13.12880 -13.05468 -12.91452 -12.80279 -12.54347 -12.52542 -12.51397 -12.31751 -12.23758 -12.16976 -12.05156 -11.83787 -11.80798 -11.50167 -10.66427 -10.42210 -9.90619 -8.84988 -7.85877 -5.36787 -0.92655 -0.49623 -0.14623 0.10088 1.13812 1.35121 1.48077 1.49243 1.56121 1.94830 2.40974 2.50016 2.51657 2.91305 3.04500 3.23061 3.27010 3.70851 3.77413 3.89654 3.91283 3.95925 4.00931 4.21310 4.30403 4.39926 4.52261 4.55686 4.75490 4.78748 4.84830 4.96577 5.11085 5.14481 5.19854 5.35086 5.55576 5.62709 5.67385 5.72112 6.28640 7.03104 7.11370 7.79748 8.23074 9.16621 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003215 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.696703 B = 8705.853823 C =10260.612162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.605 5.605 3 C -0.277 4.277 4 H 0.075 0.925 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.277 1.277 9 H -0.292 1.292 10 H -0.276 1.276 11 C 0.145 3.855 12 C -0.601 4.601 13 S 2.506 3.494 14 O -0.959 6.959 15 O -0.973 6.973 16 C -0.660 4.660 17 C -0.011 4.011 18 C -0.128 4.128 19 C -0.023 4.023 20 C -0.053 4.053 21 C 0.207 3.793 22 N -0.301 5.301 23 N -0.056 5.056 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.284 5.284 27 C 0.000 4.000 28 H 0.010 0.990 29 H 0.021 0.979 30 H 0.042 0.958 31 H 0.251 0.749 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.166 0.834 37 H 0.182 0.818 38 H 0.166 0.834 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.309 -15.654 -21.547 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.328 5.328 3 C -0.407 4.407 4 H 0.093 0.907 5 C -0.243 4.243 6 N -0.580 5.580 7 Si 0.796 3.204 8 H -0.203 1.203 9 H -0.218 1.218 10 H -0.201 1.201 11 C 0.016 3.984 12 C -0.735 4.735 13 S 2.690 3.310 14 O -0.957 6.957 15 O -0.970 6.970 16 C -0.748 4.748 17 C -0.030 4.030 18 C -0.147 4.147 19 C -0.043 4.043 20 C -0.057 4.057 21 C -0.073 4.073 22 N -0.173 5.173 23 N -0.050 5.050 24 N -0.047 5.047 25 H 0.356 0.644 26 N -0.137 5.137 27 C -0.021 4.021 28 H 0.028 0.972 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.168 0.832 36 H 0.183 0.817 37 H 0.199 0.801 38 H 0.183 0.817 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.100 -15.691 -20.831 27.308 hybrid contribution 0.154 1.453 -1.010 1.776 sum 8.254 -14.237 -21.841 27.347 Atomic orbital electron populations 1.20716 0.82114 0.96783 0.98310 1.44048 1.02374 1.00942 1.85419 1.19567 0.98854 0.86668 1.35646 0.90737 1.25801 0.98506 1.01908 0.98066 1.70220 1.20607 1.27957 1.39222 0.85338 0.77776 0.79368 0.77966 1.20284 1.21818 1.20125 1.20668 0.97633 0.89305 0.90770 1.30950 1.15030 1.18282 1.09282 1.05044 0.74658 0.77033 0.74315 1.93507 1.70280 1.53208 1.78661 1.93520 1.37283 1.87200 1.78963 1.30383 1.04346 1.14800 1.25292 1.21561 0.96375 0.89750 0.95343 1.21689 0.98482 1.00753 0.93738 1.21804 0.90854 0.90375 1.01296 1.17407 0.91963 1.03648 0.92678 1.23712 0.97076 0.98450 0.88057 1.76167 1.01768 1.16490 1.22840 1.78906 1.20548 1.15020 0.90576 1.47809 1.12287 1.30587 1.14064 0.64431 1.74824 1.02508 1.19693 1.16705 1.20949 0.94658 0.93333 0.93188 0.97180 0.96046 0.93993 0.94013 0.91081 0.92262 0.84659 0.83192 0.81678 0.80095 0.81657 0.84227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.92 8.98 127.77 1.15 9.07 16 2 N -0.60 -29.86 2.92 -726.94 -2.12 -31.99 16 3 C -0.28 -15.12 9.65 84.03 0.81 -14.31 16 4 H 0.07 3.92 7.86 -2.91 -0.02 3.90 16 5 C -0.05 -2.62 5.10 84.86 0.43 -2.18 16 6 N -0.93 -54.74 10.71 21.65 0.23 -54.50 16 7 Si 0.97 44.80 29.57 68.60 2.03 46.83 16 8 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 C 0.15 5.74 5.65 86.38 0.49 6.23 16 12 C -0.60 -18.26 6.30 71.98 0.45 -17.80 16 13 S 2.51 72.17 5.16 -56.49 -0.29 71.88 16 14 O -0.96 -30.23 17.12 -127.65 -2.19 -32.42 16 15 O -0.97 -34.68 17.12 -127.65 -2.19 -36.87 16 16 C -0.66 -15.71 5.65 22.24 0.13 -15.59 16 17 C -0.01 -0.19 9.47 22.31 0.21 0.02 16 18 C -0.13 -1.63 10.03 22.24 0.22 -1.41 16 19 C -0.02 -0.35 9.70 22.48 0.22 -0.13 16 20 C -0.05 -1.13 5.88 -20.04 -0.12 -1.25 16 21 C 0.21 4.62 7.94 137.38 1.09 5.71 16 22 N -0.30 -7.79 12.23 -52.18 -0.64 -8.43 16 23 N -0.06 -1.13 13.47 37.02 0.50 -0.63 16 24 N -0.20 -2.43 7.90 37.02 0.29 -2.14 16 25 H 0.50 0.78 8.96 -347.54 -3.12 -2.33 16 26 N -0.28 -4.72 12.08 -52.13 -0.63 -5.35 16 27 C 0.00 0.00 9.12 22.48 0.21 0.20 16 28 H 0.01 0.52 7.34 -2.39 -0.02 0.50 16 29 H 0.02 1.08 7.34 -2.39 -0.02 1.07 16 30 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 31 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 32 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 33 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 34 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 35 H 0.15 3.84 8.14 -2.39 -0.02 3.82 16 36 H 0.17 2.35 7.56 -2.91 -0.02 2.33 16 37 H 0.18 0.86 8.06 -2.91 -0.02 0.84 16 38 H 0.17 1.54 7.88 -2.91 -0.02 1.52 16 39 H 0.14 3.86 7.40 -2.91 -0.02 3.84 16 Total: -1.00 -80.01 354.22 -1.72 -81.73 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -2.01 Total: 3.33 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 5.29 Total: -31.44 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -2.37 Total: -103.04 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -4.37 Total: -69.29 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 72.17 SS G_CDS: -0.29 Total: 71.88 kcal Total: -80.01 -1.72 -81.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825888212.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.374 kcal (2) G-P(sol) polarization free energy of solvation -80.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds