Wall clock time and date at job start Tue Mar 31 2020 20:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99873 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46840 * 64.99960 * 4 3 2 6 6 C 1.46499 * 120.00020 * 265.95563 * 5 4 3 7 7 C 1.50702 * 109.46771 * 270.00059 * 6 5 4 8 8 H 1.08000 * 120.00016 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99537 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00343 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99464 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47484 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47299 * 119.99832 * 11 9 7 14 14 H 1.48500 * 109.46985 * 239.99100 * 11 9 7 15 15 C 1.34775 * 119.99768 * 85.94978 * 5 4 3 16 16 O 1.21737 * 119.99955 * 185.46680 * 15 5 4 17 17 C 1.46343 * 120.00267 * 5.47359 * 15 5 4 18 18 S 1.75802 * 125.48772 * 274.59357 * 17 15 5 19 19 C 1.70543 * 91.75039 * 180.20447 * 18 17 15 20 20 C 1.33416 * 111.32123 * 359.80194 * 19 18 17 21 21 C 1.37815 * 125.48809 * 94.43821 * 17 15 5 22 22 C 1.48234 * 123.58048 * 0.02562 * 21 17 15 23 23 N 1.34128 * 126.69203 * 354.67476 * 22 21 17 24 24 N 1.28978 * 107.26094 * 179.75676 * 23 22 21 25 25 N 1.28720 * 108.97345 * 0.42693 * 24 23 22 26 26 H 0.96993 * 125.33520 * 179.82929 * 25 24 23 27 27 N 1.28881 * 109.33655 * 359.56079 * 25 24 23 28 28 H 1.09002 * 109.47103 * 299.99877 * 1 2 3 29 29 H 1.08996 * 109.47130 * 59.99574 * 1 2 3 30 30 H 1.08994 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47212 * 60.00131 * 3 2 1 32 32 H 1.09002 * 109.47228 * 300.00427 * 3 2 1 33 33 H 1.09002 * 109.47425 * 305.00384 * 4 3 2 34 34 H 1.09000 * 109.47508 * 184.99781 * 4 3 2 35 35 H 1.09005 * 109.47119 * 29.99742 * 6 5 4 36 36 H 1.08998 * 109.47052 * 150.00102 * 6 5 4 37 37 H 0.97003 * 120.00186 * 180.02562 * 10 9 7 38 38 H 1.08001 * 124.33985 * 179.82830 * 19 18 17 39 39 H 1.08004 * 122.46880 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.1916 -0.8838 -1.3146 7 6 5.6202 -1.1959 -0.9502 8 1 6.3000 -0.3959 -0.6969 9 6 6.0594 -2.5029 -0.9411 10 7 5.2317 -3.4770 -1.2500 11 14 7.8304 -2.8898 -0.4900 12 1 8.5511 -1.6274 -0.1866 13 1 7.8556 -3.7737 0.7030 14 1 8.4925 -3.5760 -1.6284 15 6 4.1847 1.3249 -2.3437 16 8 4.4543 0.8000 -3.4086 17 6 4.0866 2.7820 -2.2503 18 16 2.6038 3.7161 -2.3891 19 6 3.4455 5.1830 -2.1697 20 6 4.7519 4.9720 -1.9999 21 6 5.1414 3.6428 -2.0363 22 6 6.5446 3.1947 -1.8697 23 7 6.9783 1.9273 -1.8007 24 7 8.2598 1.9685 -1.6608 25 7 8.6382 3.1985 -1.6309 26 1 9.5543 3.5013 -1.5310 27 7 7.6099 3.9646 -1.7600 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8509 0.5685 0.8427 34 1 3.9785 2.1766 0.0902 35 1 3.5208 -1.3818 -0.6145 36 1 3.9890 -1.2370 -2.3257 37 1 5.5407 -4.3965 -1.2433 38 1 2.9806 6.1578 -2.1678 39 1 5.4541 5.7778 -1.8451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826157566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:20 Heat of formation + Delta-G solvation = 94.927331 kcal Electronic energy + Delta-G solvation = -27708.746311 eV Core-core repulsion = 23782.476889 eV Total energy + Delta-G solvation = -3926.269422 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.14316 -39.33135 -37.79542 -37.24825 -34.72613 -33.98835 -32.76808 -32.48769 -30.00659 -29.49348 -27.09581 -25.99343 -25.51773 -24.28912 -22.94896 -22.65202 -22.49716 -20.06054 -19.23655 -18.53211 -17.37017 -16.85131 -16.40346 -16.21233 -16.01055 -15.51043 -15.24039 -14.81544 -14.53186 -14.05971 -14.00206 -13.78304 -13.37575 -13.21431 -12.89358 -12.47517 -12.14343 -11.82985 -11.76238 -11.69707 -11.58671 -11.19615 -11.05952 -11.04501 -10.80296 -10.76252 -10.70969 -10.67128 -10.32517 -9.93264 -9.44604 -9.34124 -9.09676 -8.67494 -8.43979 -8.18651 -7.52008 -5.79698 -3.80127 0.53456 1.25796 1.34894 1.81526 1.95263 2.48666 3.06993 3.42083 3.45473 3.52900 3.61654 3.89939 4.07352 4.14840 4.42905 4.66505 4.92359 5.10855 5.25775 5.32866 5.46148 5.52198 5.53999 5.55859 5.59009 5.65189 5.73250 5.75408 5.87040 5.88735 6.05996 6.21558 6.28540 6.59481 7.29683 7.43217 7.65425 7.79393 8.20383 8.48075 8.49701 8.52246 9.02117 9.29805 9.82680 11.29165 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.006632 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.014579 B = 4220.754934 C = 6794.037760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.044 3.956 4 C 0.110 3.890 5 N -0.566 5.566 6 C 0.251 3.749 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.058 3.942 10 N -0.900 5.900 11 Si 0.890 3.110 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.286 1.286 15 C 0.581 3.419 16 O -0.517 6.517 17 C -0.185 4.185 18 S 0.238 5.762 19 C -0.263 4.263 20 C -0.105 4.105 21 C -0.003 4.003 22 C 0.224 3.776 23 N -0.217 5.217 24 N -0.043 5.043 25 N -0.238 5.238 26 H 0.471 0.529 27 N -0.299 5.299 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.258 0.742 38 H 0.172 0.828 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 19.902 2.983 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.015 4.015 5 N -0.296 5.296 6 C 0.133 3.867 7 C -0.550 4.550 8 H 0.089 0.911 9 C -0.142 4.142 10 N -0.541 5.541 11 Si 0.719 3.281 12 H -0.194 1.194 13 H -0.215 1.215 14 H -0.213 1.213 15 C 0.363 3.637 16 O -0.394 6.394 17 C -0.310 4.310 18 S 0.505 5.495 19 C -0.399 4.399 20 C -0.137 4.137 21 C -0.020 4.020 22 C -0.057 4.057 23 N -0.089 5.089 24 N -0.038 5.038 25 N -0.083 5.083 26 H 0.324 0.676 27 N -0.152 5.152 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.189 0.811 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.687 18.436 2.230 19.421 hybrid contribution 2.621 1.081 0.530 2.884 sum -3.066 19.516 2.760 19.948 Atomic orbital electron populations 1.22713 0.82014 1.02640 0.99171 1.88104 1.18739 1.26806 1.95122 1.23210 0.95195 0.85444 0.99595 1.21507 0.91078 0.99094 0.89803 1.48002 1.63166 1.10560 1.07894 1.19393 0.96757 0.71514 0.99054 1.21659 0.95994 0.92548 1.44757 0.91061 1.24877 0.97239 0.96263 0.95815 1.69965 1.34763 0.99484 1.49843 0.86547 0.85724 0.78228 0.77635 1.19424 1.21531 1.21271 1.16659 0.78788 0.83002 0.85211 1.90833 1.47977 1.72449 1.28094 1.25294 0.97270 0.99963 1.08479 1.83128 1.06627 0.93919 1.65836 1.24979 0.98575 1.04307 1.12058 1.19707 0.95809 0.95315 1.02844 1.16391 0.86415 0.92268 1.06947 1.23013 0.93447 0.86684 1.02598 1.76628 0.99641 1.18322 1.14357 1.79156 1.07860 1.02568 1.14256 1.47795 1.11091 1.03015 1.46361 0.67553 1.74809 0.94489 1.23550 1.22377 0.94642 0.94524 0.89728 0.92806 0.93823 0.88532 0.90589 0.93750 0.94065 0.93241 0.81074 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.51 16 2 O -0.37 -6.34 9.96 -35.23 -0.35 -6.69 16 3 C 0.04 0.64 6.26 37.16 0.23 0.87 16 4 C 0.11 1.93 5.62 -4.04 -0.02 1.91 16 5 N -0.57 -12.60 2.41 -176.72 -0.43 -13.03 16 6 C 0.25 6.84 5.06 -5.19 -0.03 6.82 16 7 C -0.51 -14.91 9.39 -34.44 -0.32 -15.23 16 8 H 0.07 2.09 7.43 -52.49 -0.39 1.70 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 11 Si 0.89 23.03 29.54 -169.99 -5.02 18.01 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 14 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 15 C 0.58 12.92 5.99 -13.00 -0.08 12.84 16 16 O -0.52 -13.86 16.66 5.16 0.09 -13.78 16 17 C -0.18 -3.18 4.36 -36.48 -0.16 -3.34 16 18 S 0.24 2.85 21.18 -107.50 -2.28 0.57 16 19 C -0.26 -2.59 10.88 29.05 0.32 -2.27 16 20 C -0.11 -1.25 9.96 -41.15 -0.41 -1.66 16 21 C 0.00 -0.06 5.87 -105.83 -0.62 -0.68 16 22 C 0.22 3.99 7.99 -156.25 -1.25 2.74 16 23 N -0.22 -4.60 10.83 32.13 0.35 -4.25 16 24 N -0.04 -0.79 13.47 60.35 0.81 0.02 16 25 N -0.24 -3.14 7.90 60.35 0.48 -2.67 16 26 H 0.47 3.56 8.96 -340.36 -3.05 0.51 16 27 N -0.30 -4.38 12.34 32.15 0.40 -3.98 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.60 6.12 -51.93 -0.32 0.28 16 33 H 0.10 1.77 8.04 -51.93 -0.42 1.36 16 34 H 0.08 1.18 6.92 -51.93 -0.36 0.82 16 35 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 36 H 0.04 1.27 7.35 -51.93 -0.38 0.89 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -38.56 356.04 -8.16 -46.72 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.98 Total: -4.33 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.32 Total: 5.14 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 2.34 Total: -51.01 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.26 Total: -20.47 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.02 Total: 18.01 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.28 Total: 0.57 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -38.56 -8.16 -46.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826157566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.647 kcal (2) G-P(sol) polarization free energy of solvation -38.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds