Wall clock time and date at job start Tue Mar 31 2020 20:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99873 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46840 * 64.99960 * 4 3 2 6 6 C 1.46499 * 120.00020 * 265.95563 * 5 4 3 7 7 C 1.50702 * 109.46771 * 270.00059 * 6 5 4 8 8 H 1.08000 * 120.00016 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99537 * 180.02562 * 7 6 5 10 10 N 1.31505 * 120.00343 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99464 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47484 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47299 * 119.99832 * 11 9 7 14 14 H 1.48500 * 109.46985 * 239.99100 * 11 9 7 15 15 C 1.34775 * 119.99768 * 85.94978 * 5 4 3 16 16 O 1.21737 * 119.99955 * 185.46680 * 15 5 4 17 17 C 1.46343 * 120.00267 * 5.47359 * 15 5 4 18 18 S 1.75802 * 125.48772 * 274.59357 * 17 15 5 19 19 C 1.70543 * 91.75039 * 180.20447 * 18 17 15 20 20 C 1.33416 * 111.32123 * 359.80194 * 19 18 17 21 21 C 1.37815 * 125.48809 * 94.43821 * 17 15 5 22 22 C 1.48234 * 123.58048 * 0.02562 * 21 17 15 23 23 N 1.34128 * 126.69203 * 354.67476 * 22 21 17 24 24 N 1.28978 * 107.26094 * 179.75676 * 23 22 21 25 25 N 1.28720 * 108.97345 * 0.42693 * 24 23 22 26 26 H 0.96993 * 125.33520 * 179.82929 * 25 24 23 27 27 N 1.28881 * 109.33655 * 359.56079 * 25 24 23 28 28 H 1.09002 * 109.47103 * 299.99877 * 1 2 3 29 29 H 1.08996 * 109.47130 * 59.99574 * 1 2 3 30 30 H 1.08994 * 109.46962 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47212 * 60.00131 * 3 2 1 32 32 H 1.09002 * 109.47228 * 300.00427 * 3 2 1 33 33 H 1.09002 * 109.47425 * 305.00384 * 4 3 2 34 34 H 1.09000 * 109.47508 * 184.99781 * 4 3 2 35 35 H 1.09005 * 109.47119 * 29.99742 * 6 5 4 36 36 H 1.08998 * 109.47052 * 150.00102 * 6 5 4 37 37 H 0.97003 * 120.00186 * 180.02562 * 10 9 7 38 38 H 1.08001 * 124.33985 * 179.82830 * 19 18 17 39 39 H 1.08004 * 122.46880 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.1916 -0.8838 -1.3146 7 6 5.6202 -1.1959 -0.9502 8 1 6.3000 -0.3959 -0.6969 9 6 6.0594 -2.5029 -0.9411 10 7 5.2317 -3.4770 -1.2500 11 14 7.8304 -2.8898 -0.4900 12 1 8.5511 -1.6274 -0.1866 13 1 7.8556 -3.7737 0.7030 14 1 8.4925 -3.5760 -1.6284 15 6 4.1847 1.3249 -2.3437 16 8 4.4543 0.8000 -3.4086 17 6 4.0866 2.7820 -2.2503 18 16 2.6038 3.7161 -2.3891 19 6 3.4455 5.1830 -2.1697 20 6 4.7519 4.9720 -1.9999 21 6 5.1414 3.6428 -2.0363 22 6 6.5446 3.1947 -1.8697 23 7 6.9783 1.9273 -1.8007 24 7 8.2598 1.9685 -1.6608 25 7 8.6382 3.1985 -1.6309 26 1 9.5543 3.5013 -1.5310 27 7 7.6099 3.9646 -1.7600 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8509 0.5685 0.8427 34 1 3.9785 2.1766 0.0902 35 1 3.5208 -1.3818 -0.6145 36 1 3.9890 -1.2370 -2.3257 37 1 5.5407 -4.3965 -1.2433 38 1 2.9806 6.1578 -2.1678 39 1 5.4541 5.7778 -1.8451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826157566.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:20 Heat of formation + Delta-G solvation = 64.655647 kcal Electronic energy + Delta-G solvation = -27710.058989 eV Core-core repulsion = 23782.476889 eV Total energy + Delta-G solvation = -3927.582100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.42086 -40.86959 -38.93451 -38.55724 -36.47808 -35.29159 -34.67716 -33.99223 -31.43562 -30.85323 -28.85539 -27.11126 -26.95429 -25.58997 -24.76969 -24.06381 -23.71280 -21.44150 -20.49022 -19.71083 -18.77563 -18.46873 -18.11438 -17.69534 -17.25472 -16.95020 -16.52406 -16.42735 -15.93304 -15.71782 -15.26113 -15.17042 -14.50279 -14.40786 -14.34080 -14.14953 -13.61046 -13.40171 -13.14595 -13.05792 -12.98568 -12.82167 -12.71997 -12.54600 -12.37287 -12.20875 -12.07301 -11.97507 -11.91309 -11.85462 -11.50099 -10.89475 -10.54870 -10.50603 -9.75073 -9.43707 -9.37519 -8.09075 -6.18148 -0.59671 0.12932 0.18225 0.82090 0.90508 1.36314 1.39878 1.47114 1.53893 1.83316 1.90696 2.39601 2.51038 2.81898 2.96325 3.19473 3.21683 3.63545 4.12573 4.21110 4.22972 4.26794 4.40446 4.45061 4.47312 4.51287 4.58403 4.64184 4.89767 4.90830 4.92261 5.12480 5.22458 5.26633 5.38818 5.64101 5.71892 5.94509 6.24441 6.36014 6.76560 6.94097 7.18178 7.34485 7.52258 8.99290 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.006632 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.014579 B = 4220.754934 C = 6794.037760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.048 3.952 4 C 0.106 3.894 5 N -0.572 5.572 6 C 0.275 3.725 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.956 3.044 12 H -0.266 1.266 13 H -0.273 1.273 14 H -0.286 1.286 15 C 0.585 3.415 16 O -0.584 6.584 17 C -0.244 4.244 18 S 0.291 5.709 19 C -0.221 4.221 20 C -0.117 4.117 21 C -0.001 4.001 22 C 0.207 3.793 23 N -0.277 5.277 24 N -0.072 5.072 25 N -0.200 5.200 26 H 0.493 0.507 27 N -0.274 5.274 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.027 0.973 36 H -0.010 1.010 37 H 0.261 0.739 38 H 0.221 0.779 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.272 24.128 4.267 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.029 4.029 4 C -0.017 4.017 5 N -0.301 5.301 6 C 0.154 3.846 7 C -0.557 4.557 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.576 5.576 11 Si 0.782 3.218 12 H -0.190 1.190 13 H -0.198 1.198 14 H -0.212 1.212 15 C 0.371 3.629 16 O -0.465 6.465 17 C -0.368 4.368 18 S 0.559 5.441 19 C -0.358 4.358 20 C -0.147 4.147 21 C -0.020 4.020 22 C -0.074 4.074 23 N -0.148 5.148 24 N -0.067 5.067 25 N -0.051 5.051 26 H 0.352 0.648 27 N -0.128 5.128 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.045 0.955 36 H 0.008 0.992 37 H 0.070 0.930 38 H 0.238 0.762 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.089 22.693 3.562 23.764 hybrid contribution 2.714 -0.062 0.116 2.718 sum -3.375 22.630 3.678 23.174 Atomic orbital electron populations 1.22898 0.79763 1.03231 1.01080 1.88046 1.21405 1.28523 1.95525 1.23221 0.92648 0.85068 1.01987 1.21753 0.93697 0.99344 0.86887 1.47874 1.63430 1.08759 1.10006 1.18685 0.95583 0.75059 0.95238 1.21897 0.96799 0.92673 1.44321 0.91426 1.25747 1.01581 0.96178 0.95786 1.70091 1.36791 0.99896 1.50832 0.85524 0.80411 0.78188 0.77710 1.18976 1.19821 1.21208 1.17192 0.76668 0.85272 0.83747 1.90767 1.50727 1.74662 1.30385 1.24746 1.01003 0.97233 1.13862 1.82925 1.03507 0.93543 1.64167 1.25560 0.97536 1.05263 1.07428 1.19823 0.97186 0.93714 1.04003 1.16775 0.85187 0.93883 1.06148 1.23493 0.95039 0.85989 1.02920 1.76591 1.00834 1.20805 1.16616 1.79054 1.07460 1.04378 1.15856 1.47856 1.12090 1.01832 1.43312 0.64762 1.74780 0.93976 1.22674 1.21408 0.91734 0.93424 0.90010 0.88562 0.92857 0.90252 0.88239 0.95497 0.99153 0.92982 0.76190 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.42 -14.40 9.96 -148.98 -1.48 -15.88 16 3 C 0.05 1.35 6.26 71.98 0.45 1.80 16 4 C 0.11 3.78 5.62 86.38 0.49 4.27 16 5 N -0.57 -26.87 2.41 -831.21 -2.00 -28.88 16 6 C 0.28 16.16 5.06 85.63 0.43 16.60 16 7 C -0.52 -31.97 9.39 25.60 0.24 -31.73 16 8 H 0.07 4.16 7.43 -2.91 -0.02 4.14 16 9 C 0.00 0.27 5.46 84.66 0.46 0.73 16 10 N -0.93 -60.46 13.29 21.45 0.28 -60.18 16 11 Si 0.96 48.85 29.54 68.60 2.03 50.88 16 12 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 13 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 14 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 15 C 0.59 27.32 5.99 86.35 0.52 27.84 16 16 O -0.58 -33.77 16.66 -4.47 -0.07 -33.84 16 17 C -0.24 -8.29 4.36 24.28 0.11 -8.19 16 18 S 0.29 6.03 21.18 -56.49 -1.20 4.83 16 19 C -0.22 -3.12 10.88 66.73 0.73 -2.39 16 20 C -0.12 -2.30 9.96 21.25 0.21 -2.09 16 21 C 0.00 -0.04 5.87 -20.64 -0.12 -0.16 16 22 C 0.21 7.28 7.99 137.26 1.10 8.38 16 23 N -0.28 -12.10 10.83 -52.26 -0.57 -12.67 16 24 N -0.07 -2.70 13.47 37.02 0.50 -2.20 16 25 N -0.20 -5.04 7.90 37.02 0.29 -4.75 16 26 H 0.49 6.49 8.96 -347.53 -3.12 3.38 16 27 N -0.27 -7.56 12.34 -52.21 -0.64 -8.20 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 1.38 6.12 -2.39 -0.01 1.36 16 33 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 34 H 0.10 3.02 6.92 -2.39 -0.02 3.00 16 35 H 0.03 1.65 7.50 -2.38 -0.02 1.63 16 36 H -0.01 -0.66 7.35 -2.39 -0.02 -0.67 16 37 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -93.30 356.04 0.99 -92.31 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -2.00 Total: 1.65 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 5.86 Total: 16.94 kcal Atomic # 7 Polarization: -114.74 SS G_CDS: -2.14 Total: -116.87 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -1.56 Total: -49.73 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Atomic # 16 Polarization: 6.03 SS G_CDS: -1.20 Total: 4.83 kcal Total: -93.30 0.99 -92.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826157566.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.963 kcal (2) G-P(sol) polarization free energy of solvation -93.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds