Wall clock time and date at job start Tue Mar 31 2020 19:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38054 * 119.93833 * 2 1 4 4 C 1.39282 * 119.87642 * 179.97438 * 3 2 1 5 5 C 1.48472 * 120.11029 * 180.27592 * 4 3 2 6 6 N 1.34040 * 126.67441 * 359.41641 * 5 4 3 7 7 N 1.28986 * 107.26984 * 179.89494 * 6 5 4 8 8 N 1.28741 * 108.93901 * 0.36978 * 7 6 5 9 9 H 0.97001 * 125.33607 * 179.78408 * 8 7 6 10 10 N 1.28864 * 109.31702 * 359.76452 * 8 7 6 11 11 C 1.39311 * 119.76926 * 0.02562 * 4 3 2 12 12 C 1.38009 * 119.88270 * 0.02562 * 11 4 3 13 13 C 1.38292 * 119.94229 * 179.97438 * 2 1 3 14 14 S 1.76204 * 119.88252 * 359.97438 * 13 2 1 15 15 O 1.42098 * 106.39799 * 178.43311 * 14 13 2 16 16 O 1.42098 * 106.40365 * 311.35696 * 14 13 2 17 17 N 1.65598 * 107.21440 * 64.89324 * 14 13 2 18 18 C 1.46503 * 120.00079 * 63.46892 * 17 14 13 19 19 C 1.53002 * 109.47313 * 163.83433 * 18 17 14 20 20 C 1.50706 * 109.47071 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00175 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00001 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99642 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47221 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47416 * 120.00002 * 24 22 20 27 27 H 1.48504 * 109.46737 * 239.99990 * 24 22 20 28 28 H 1.08996 * 109.47157 * 264.51782 * 1 2 3 29 29 H 1.08995 * 109.47007 * 24.52652 * 1 2 3 30 30 H 1.09005 * 109.46490 * 144.52450 * 1 2 3 31 31 H 1.07997 * 120.05952 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.06252 * 179.97438 * 11 4 3 33 33 H 1.08002 * 119.94081 * 180.02562 * 12 11 4 34 34 H 0.96996 * 120.00337 * 243.46182 * 17 14 13 35 35 H 1.09007 * 109.47056 * 283.83512 * 18 17 14 36 36 H 1.09000 * 109.47508 * 43.82980 * 18 17 14 37 37 H 1.09000 * 109.47201 * 299.99616 * 19 18 17 38 38 H 1.08996 * 109.47224 * 59.99885 * 19 18 17 39 39 H 0.96998 * 119.99689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5888 1.1948 0.0005 5 6 4.3351 2.4784 0.0067 6 7 3.8081 3.7108 0.0012 7 7 4.7900 4.5472 0.0121 8 7 5.8977 3.8911 0.0162 9 1 6.7836 4.2861 0.0211 10 7 5.6447 2.6275 0.0130 11 6 4.2792 -0.0152 0.0005 12 6 3.5806 -1.2054 -0.0005 13 6 2.1973 -1.1983 0.0005 14 16 1.3116 -2.7216 0.0019 15 8 2.2880 -3.7534 -0.0351 16 8 0.3317 -2.6151 1.0254 17 7 0.4845 -2.8089 -1.4301 18 6 1.2176 -2.8608 -2.6974 19 6 0.2804 -3.3359 -3.8096 20 6 1.0344 -3.3887 -5.1135 21 1 2.0777 -3.1116 -5.1455 22 6 0.3925 -3.7918 -6.2652 23 7 -0.8780 -4.1297 -6.2260 24 14 1.3272 -3.8580 -7.8811 25 1 2.7319 -3.4308 -7.6583 26 1 1.3090 -5.2465 -8.4070 27 1 0.6835 -2.9484 -8.8628 28 1 -0.3633 -0.0982 1.0229 29 1 -0.3633 0.9349 -0.4266 30 1 -0.3632 -0.8370 -0.5965 31 1 1.6560 2.1316 0.0004 32 1 5.3592 -0.0219 0.0005 33 1 4.1149 -2.1440 -0.0001 34 1 -0.4853 -2.8257 -1.4298 35 1 1.5949 -1.8673 -2.9399 36 1 2.0534 -3.5544 -2.6056 37 1 -0.0969 -4.3294 -3.5672 38 1 -0.5554 -2.6423 -3.9015 39 1 -1.3297 -4.4130 -7.0363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826255777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:05 Heat of formation + Delta-G solvation = 67.965411 kcal Electronic energy + Delta-G solvation = -26114.666161 eV Core-core repulsion = 22187.227583 eV Total energy + Delta-G solvation = -3927.438578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.85312 -39.67480 -37.10041 -35.67201 -35.51328 -34.88154 -34.24816 -32.86596 -32.60082 -31.13709 -29.17078 -27.28994 -25.26680 -24.94540 -24.50727 -22.56795 -21.50655 -21.15875 -19.62446 -19.32834 -17.83697 -17.53031 -17.15040 -16.46579 -16.37098 -16.08542 -15.09887 -14.77100 -14.53814 -14.30412 -14.28696 -13.99214 -13.72738 -13.45794 -13.19647 -12.66118 -12.59569 -12.55145 -12.39149 -11.90878 -11.80314 -11.76933 -11.75372 -11.67092 -11.34657 -11.31790 -11.28316 -11.14104 -10.84126 -10.61118 -10.45782 -9.60977 -9.31956 -9.25062 -9.02888 -8.93975 -8.42321 -6.09251 -4.12418 0.06045 0.62146 0.77084 1.07877 1.83502 1.84808 3.14474 3.23512 3.27574 3.35355 3.38291 3.41335 3.77711 3.90403 4.40286 4.41206 4.54573 4.70466 4.80755 4.91878 5.05026 5.17935 5.27892 5.29393 5.40418 5.54245 5.65171 5.73053 5.82657 5.96944 5.98785 6.01902 6.05729 6.18445 6.45344 6.53728 6.70302 7.35669 7.55004 7.64119 7.73891 7.89529 8.27076 8.93655 9.52365 11.02181 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003241 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.020058 B = 8637.734841 C =10297.944921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 C -0.101 4.101 4 C 0.035 3.965 5 C 0.214 3.786 6 N -0.262 5.262 7 N -0.047 5.047 8 N -0.226 5.226 9 H 0.477 0.523 10 N -0.286 5.286 11 C -0.110 4.110 12 C -0.017 4.017 13 C -0.659 4.659 14 S 2.693 3.307 15 O -0.959 6.959 16 O -0.964 6.964 17 N -1.110 6.110 18 C 0.118 3.882 19 C 0.018 3.982 20 C -0.523 4.523 21 H 0.059 0.941 22 C 0.059 3.941 23 N -0.892 5.892 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.153 0.847 34 H 0.417 0.583 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.027 0.973 38 H 0.024 0.976 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.425 14.155 14.770 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.022 3.978 3 C -0.122 4.122 4 C 0.031 3.969 5 C -0.066 4.066 6 N -0.135 5.135 7 N -0.042 5.042 8 N -0.072 5.072 9 H 0.331 0.669 10 N -0.137 5.137 11 C -0.131 4.131 12 C -0.036 4.036 13 C -0.745 4.745 14 S 2.781 3.219 15 O -0.949 6.949 16 O -0.954 6.954 17 N -0.873 5.873 18 C -0.006 4.006 19 C -0.021 4.021 20 C -0.562 4.562 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.531 5.531 24 Si 0.723 3.277 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.253 0.747 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.568 14.175 15.321 23.395 hybrid contribution 0.967 0.563 -1.351 1.754 sum 11.535 14.738 13.970 23.354 Atomic orbital electron populations 1.21318 0.89528 1.04799 1.04760 1.19470 0.96304 0.91123 0.90917 1.21143 0.92200 0.98783 1.00068 1.17442 0.92278 0.86968 1.00195 1.23695 0.86467 0.94345 1.02084 1.76110 1.21809 0.98324 1.17217 1.78946 0.88458 1.22230 1.14608 1.47759 1.11667 1.01943 1.45813 0.66870 1.74943 1.17644 0.99840 1.21293 1.21220 1.00743 0.90718 1.00411 1.20932 0.91863 0.99286 0.91567 1.31160 1.06540 1.20492 1.16316 1.01950 0.73511 0.73642 0.72808 1.93567 1.62037 1.52866 1.86425 1.93583 1.59307 1.87118 1.55441 1.55528 1.18680 1.90684 1.22360 1.21676 0.96176 1.00402 0.82391 1.19289 0.94442 0.97285 0.91068 1.21122 0.97083 1.45403 0.92617 0.92227 1.24996 0.94915 0.95131 0.99242 1.69966 1.09643 1.44988 1.28500 0.86491 0.80058 0.77718 0.83470 1.19645 1.20923 1.21004 0.88275 0.89617 0.90383 0.83762 0.84083 0.82965 0.74705 0.92861 0.91244 0.95511 0.95726 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.60 36.01 0.31 -1.30 16 2 C 0.02 0.29 5.87 -104.67 -0.61 -0.33 16 3 C -0.10 -1.17 9.33 -39.26 -0.37 -1.54 16 4 C 0.03 0.40 5.88 -104.89 -0.62 -0.21 16 5 C 0.21 2.42 7.94 -156.31 -1.24 1.18 16 6 N -0.26 -3.05 12.23 32.16 0.39 -2.65 16 7 N -0.05 -0.45 13.47 60.35 0.81 0.36 16 8 N -0.23 -1.54 7.90 60.35 0.48 -1.06 16 9 H 0.48 0.84 8.96 -340.36 -3.05 -2.21 16 10 N -0.29 -2.71 12.08 32.17 0.39 -2.32 16 11 C -0.11 -1.23 9.70 -39.27 -0.38 -1.61 16 12 C -0.02 -0.21 9.53 -39.63 -0.38 -0.59 16 13 C -0.66 -8.86 5.86 -39.53 -0.23 -9.09 16 14 S 2.69 40.83 4.94 -107.50 -0.53 40.30 16 15 O -0.96 -16.95 16.46 -57.17 -0.94 -17.89 16 16 O -0.96 -15.58 16.46 -57.17 -0.94 -16.52 16 17 N -1.11 -17.48 4.77 -10.61 -0.05 -17.53 16 18 C 0.12 2.23 6.15 -4.04 -0.02 2.21 16 19 C 0.02 0.43 5.12 -27.88 -0.14 0.28 16 20 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 24 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.10 1.02 8.00 -51.93 -0.42 0.61 16 29 H 0.08 0.75 8.05 -51.93 -0.42 0.34 16 30 H 0.08 0.89 5.43 -51.93 -0.28 0.60 16 31 H 0.14 1.45 7.89 -52.49 -0.41 1.03 16 32 H 0.14 1.29 7.88 -52.49 -0.41 0.87 16 33 H 0.15 1.70 7.32 -52.49 -0.38 1.31 16 34 H 0.42 5.95 8.31 -34.47 -0.29 5.66 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.33 7.77 -51.93 -0.40 0.92 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -34.70 351.09 -10.36 -45.06 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.88 Total: -0.19 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -4.10 Total: -23.79 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 2.76 Total: -48.19 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.88 Total: -34.42 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 40.83 SS G_CDS: -0.53 Total: 40.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.70 -10.36 -45.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826255777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.025 kcal (2) G-P(sol) polarization free energy of solvation -34.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds