Wall clock time and date at job start Tue Mar 31 2020 19:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38054 * 119.93833 * 2 1 4 4 C 1.39282 * 119.87642 * 179.97438 * 3 2 1 5 5 C 1.48472 * 120.11029 * 180.27592 * 4 3 2 6 6 N 1.34040 * 126.67441 * 359.41641 * 5 4 3 7 7 N 1.28986 * 107.26984 * 179.89494 * 6 5 4 8 8 N 1.28741 * 108.93901 * 0.36978 * 7 6 5 9 9 H 0.97001 * 125.33607 * 179.78408 * 8 7 6 10 10 N 1.28864 * 109.31702 * 359.76452 * 8 7 6 11 11 C 1.39311 * 119.76926 * 0.02562 * 4 3 2 12 12 C 1.38009 * 119.88270 * 0.02562 * 11 4 3 13 13 C 1.38292 * 119.94229 * 179.97438 * 2 1 3 14 14 S 1.76204 * 119.88252 * 359.97438 * 13 2 1 15 15 O 1.42098 * 106.39799 * 178.43311 * 14 13 2 16 16 O 1.42098 * 106.40365 * 311.35696 * 14 13 2 17 17 N 1.65598 * 107.21440 * 64.89324 * 14 13 2 18 18 C 1.46503 * 120.00079 * 63.46892 * 17 14 13 19 19 C 1.53002 * 109.47313 * 163.83433 * 18 17 14 20 20 C 1.50706 * 109.47071 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00175 * 0.02562 * 20 19 18 22 22 C 1.37874 * 120.00001 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99642 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47221 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47416 * 120.00002 * 24 22 20 27 27 H 1.48504 * 109.46737 * 239.99990 * 24 22 20 28 28 H 1.08996 * 109.47157 * 264.51782 * 1 2 3 29 29 H 1.08995 * 109.47007 * 24.52652 * 1 2 3 30 30 H 1.09005 * 109.46490 * 144.52450 * 1 2 3 31 31 H 1.07997 * 120.05952 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.06252 * 179.97438 * 11 4 3 33 33 H 1.08002 * 119.94081 * 180.02562 * 12 11 4 34 34 H 0.96996 * 120.00337 * 243.46182 * 17 14 13 35 35 H 1.09007 * 109.47056 * 283.83512 * 18 17 14 36 36 H 1.09000 * 109.47508 * 43.82980 * 18 17 14 37 37 H 1.09000 * 109.47201 * 299.99616 * 19 18 17 38 38 H 1.08996 * 109.47224 * 59.99885 * 19 18 17 39 39 H 0.96998 * 119.99689 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1963 0.0000 4 6 3.5888 1.1948 0.0005 5 6 4.3351 2.4784 0.0067 6 7 3.8081 3.7108 0.0012 7 7 4.7900 4.5472 0.0121 8 7 5.8977 3.8911 0.0162 9 1 6.7836 4.2861 0.0211 10 7 5.6447 2.6275 0.0130 11 6 4.2792 -0.0152 0.0005 12 6 3.5806 -1.2054 -0.0005 13 6 2.1973 -1.1983 0.0005 14 16 1.3116 -2.7216 0.0019 15 8 2.2880 -3.7534 -0.0351 16 8 0.3317 -2.6151 1.0254 17 7 0.4845 -2.8089 -1.4301 18 6 1.2176 -2.8608 -2.6974 19 6 0.2804 -3.3359 -3.8096 20 6 1.0344 -3.3887 -5.1135 21 1 2.0777 -3.1116 -5.1455 22 6 0.3925 -3.7918 -6.2652 23 7 -0.8780 -4.1297 -6.2260 24 14 1.3272 -3.8580 -7.8811 25 1 2.7319 -3.4308 -7.6583 26 1 1.3090 -5.2465 -8.4070 27 1 0.6835 -2.9484 -8.8628 28 1 -0.3633 -0.0982 1.0229 29 1 -0.3633 0.9349 -0.4266 30 1 -0.3632 -0.8370 -0.5965 31 1 1.6560 2.1316 0.0004 32 1 5.3592 -0.0219 0.0005 33 1 4.1149 -2.1440 -0.0001 34 1 -0.4853 -2.8257 -1.4298 35 1 1.5949 -1.8673 -2.9399 36 1 2.0534 -3.5544 -2.6056 37 1 -0.0969 -4.3294 -3.5672 38 1 -0.5554 -2.6423 -3.9015 39 1 -1.3297 -4.4130 -7.0363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826255777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:05 Heat of formation + Delta-G solvation = 42.231247 kcal Electronic energy + Delta-G solvation = -26115.782078 eV Core-core repulsion = 22187.227583 eV Total energy + Delta-G solvation = -3928.554495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.58657 -40.58028 -38.38808 -37.05887 -36.96147 -35.66420 -35.07246 -34.70348 -33.56479 -32.00616 -30.98022 -28.16778 -26.39074 -26.10865 -25.70492 -23.43603 -22.96489 -22.35612 -20.59934 -20.27103 -19.06903 -18.45551 -18.25359 -18.13844 -17.39780 -17.28261 -16.48433 -16.21169 -15.69212 -15.57060 -15.42062 -15.10481 -14.91507 -14.40008 -14.34850 -14.08933 -13.51069 -13.45210 -13.37463 -13.27824 -13.21686 -13.20943 -12.97981 -12.92925 -12.51141 -12.50929 -12.40573 -12.34731 -12.16685 -12.12242 -11.84946 -11.46631 -11.25768 -10.59541 -10.28832 -10.19333 -9.91057 -8.18024 -6.27763 -0.87194 -0.56086 0.03390 0.18366 0.98625 1.31164 1.44000 1.45498 1.57540 1.97715 2.38869 2.45123 2.47287 2.73057 2.99195 3.17338 3.35925 3.64940 3.76127 3.94536 4.06743 4.17393 4.26798 4.34613 4.42926 4.51465 4.59507 4.72064 4.79299 4.86363 4.95388 5.01034 5.14642 5.15265 5.17404 5.52606 5.54424 5.64298 5.69208 5.85428 6.06252 6.26667 6.88418 6.99338 7.41297 8.94111 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.010457 B = 0.003241 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.020058 B = 8637.734841 C =10297.944921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.018 3.982 3 C -0.104 4.104 4 C 0.034 3.966 5 C 0.200 3.800 6 N -0.284 5.284 7 N -0.052 5.052 8 N -0.196 5.196 9 H 0.497 0.503 10 N -0.283 5.283 11 C -0.107 4.107 12 C -0.025 4.025 13 C -0.670 4.670 14 S 2.710 3.290 15 O -0.987 6.987 16 O -0.975 6.975 17 N -1.109 6.109 18 C 0.134 3.866 19 C 0.020 3.980 20 C -0.540 4.540 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.962 3.038 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.280 1.280 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.423 0.577 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.001 0.999 38 H 0.011 0.989 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.303 15.788 14.733 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.017 3.983 3 C -0.124 4.124 4 C 0.030 3.970 5 C -0.080 4.080 6 N -0.157 5.157 7 N -0.047 5.047 8 N -0.047 5.047 9 H 0.356 0.644 10 N -0.135 5.135 11 C -0.128 4.128 12 C -0.044 4.044 13 C -0.759 4.759 14 S 2.801 3.199 15 O -0.977 6.977 16 O -0.966 6.966 17 N -0.871 5.871 18 C 0.009 3.991 19 C -0.019 4.019 20 C -0.579 4.579 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.787 3.213 25 H -0.184 1.184 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.259 0.741 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.442 15.798 15.294 25.264 hybrid contribution 0.471 0.170 -1.265 1.360 sum 12.913 15.968 14.029 24.870 Atomic orbital electron populations 1.21435 0.88823 1.05686 1.05152 1.19645 0.96978 0.91010 0.90677 1.21307 0.92438 0.98972 0.99728 1.17613 0.92510 0.87488 0.99361 1.23641 0.86993 0.94176 1.03219 1.76092 1.22800 0.98606 1.18172 1.78897 0.88842 1.22054 1.14908 1.47829 1.12268 1.01151 1.43453 0.64378 1.74904 1.16890 1.00792 1.20944 1.21409 1.01738 0.90024 0.99607 1.21117 0.91520 1.00227 0.91554 1.30797 1.06982 1.19437 1.18722 1.01192 0.72887 0.73758 0.72046 1.93527 1.62617 1.54893 1.86636 1.93563 1.59955 1.87556 1.55495 1.55368 1.19050 1.91128 1.21567 1.21300 0.94949 1.00879 0.82014 1.19158 0.94804 0.95710 0.92178 1.21603 0.97662 1.44791 0.93875 0.91511 1.25887 0.95762 0.94877 1.02996 1.70087 1.11250 1.46139 1.29513 0.85444 0.79180 0.77665 0.79032 1.18434 1.20748 1.20561 0.87785 0.87488 0.91123 0.82413 0.82036 0.82215 0.74052 0.91345 0.91469 0.98018 0.97050 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.60 71.24 0.61 -2.60 16 2 C 0.02 0.43 5.87 -19.89 -0.12 0.32 16 3 C -0.10 -2.24 9.33 22.48 0.21 -2.03 16 4 C 0.03 0.73 5.88 -20.04 -0.12 0.61 16 5 C 0.20 4.11 7.94 137.39 1.09 5.20 16 6 N -0.28 -6.13 12.23 -52.18 -0.64 -6.76 16 7 N -0.05 -0.89 13.47 37.02 0.50 -0.39 16 8 N -0.20 -2.16 7.90 37.02 0.29 -1.86 16 9 H 0.50 0.32 8.96 -347.53 -3.12 -2.80 16 10 N -0.28 -4.65 12.08 -52.13 -0.63 -5.28 16 11 C -0.11 -2.19 9.70 22.47 0.22 -1.97 16 12 C -0.02 -0.58 9.53 22.24 0.21 -0.37 16 13 C -0.67 -17.42 5.86 22.31 0.13 -17.29 16 14 S 2.71 81.67 4.94 -56.49 -0.28 81.40 16 15 O -0.99 -34.86 16.46 -128.00 -2.11 -36.97 16 16 O -0.98 -31.34 16.46 -128.00 -2.11 -33.45 16 17 N -1.11 -35.04 4.77 -187.47 -0.89 -35.93 16 18 C 0.13 5.05 6.15 86.38 0.53 5.58 16 19 C 0.02 0.98 5.12 29.85 0.15 1.14 16 20 C -0.54 -28.97 9.11 25.60 0.23 -28.73 16 21 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 22 C 0.00 0.17 5.46 84.65 0.46 0.63 16 23 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 24 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 25 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 H 0.10 2.05 8.00 -2.39 -0.02 2.03 16 29 H 0.11 1.71 8.05 -2.39 -0.02 1.69 16 30 H 0.07 1.57 5.43 -2.38 -0.01 1.55 16 31 H 0.16 2.90 7.89 -2.91 -0.02 2.88 16 32 H 0.16 2.55 7.88 -2.91 -0.02 2.52 16 33 H 0.16 3.40 7.32 -2.91 -0.02 3.38 16 34 H 0.42 12.27 8.31 -96.75 -0.80 11.46 16 35 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.07 2.56 7.77 -2.39 -0.02 2.54 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -73.43 351.09 -2.72 -76.15 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -2.79 Total: 11.93 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 3.62 Total: -39.52 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -1.09 Total: -104.32 kcal Atomic # 8 Polarization: -66.20 SS G_CDS: -4.21 Total: -70.41 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 81.67 SS G_CDS: -0.28 Total: 81.40 kcal Total: -73.43 -2.72 -76.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826255777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.386 kcal (2) G-P(sol) polarization free energy of solvation -73.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds