Wall clock time and date at job start Tue Mar 31 2020 19:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38343 * 119.88088 * 2 1 4 4 C 1.38003 * 120.11679 * 180.27653 * 3 2 1 5 5 C 1.39326 * 119.88079 * 359.74702 * 4 3 2 6 6 C 1.48463 * 120.11701 * 180.02562 * 5 4 3 7 7 N 1.34046 * 126.67596 * 179.66513 * 6 5 4 8 8 N 1.28979 * 107.26919 * 179.83674 * 7 6 5 9 9 N 1.28738 * 108.94396 * 0.43160 * 8 7 6 10 10 H 0.97001 * 125.33731 * 179.74897 * 9 8 7 11 11 N 1.28865 * 109.31537 * 359.72451 * 9 8 7 12 12 C 1.39282 * 119.76497 * 359.97438 * 5 4 3 13 13 C 1.38045 * 119.88274 * 0.02562 * 12 5 4 14 14 S 1.76202 * 119.93929 * 179.97438 * 13 12 5 15 15 O 1.42106 * 106.40211 * 131.02073 * 14 13 12 16 16 O 1.42100 * 106.40356 * 358.09755 * 14 13 12 17 17 N 1.65600 * 107.21554 * 244.55725 * 14 13 12 18 18 C 1.46501 * 119.99740 * 63.53176 * 17 14 13 19 19 C 1.53008 * 109.46556 * 163.43517 * 18 17 14 20 20 C 1.50708 * 109.46646 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99950 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99871 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99906 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00006 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47423 * 89.99481 * 24 22 20 26 26 H 1.48499 * 109.46896 * 210.00143 * 24 22 20 27 27 H 1.48505 * 109.46768 * 329.99492 * 24 22 20 28 28 H 1.08997 * 109.46914 * 264.78163 * 1 2 3 29 29 H 1.08993 * 109.47139 * 24.78614 * 1 2 3 30 30 H 1.08997 * 109.46881 * 144.78812 * 1 2 3 31 31 H 1.08001 * 119.93588 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.06153 * 179.76756 * 4 3 2 33 33 H 1.08003 * 120.05697 * 180.02562 * 12 5 4 34 34 H 0.97003 * 119.99697 * 243.53351 * 17 14 13 35 35 H 1.08997 * 109.47079 * 283.43064 * 18 17 14 36 36 H 1.08994 * 109.47275 * 43.43960 * 18 17 14 37 37 H 1.08997 * 109.47056 * 299.99561 * 19 18 17 38 38 H 1.08994 * 109.46967 * 60.00254 * 19 18 17 39 39 H 0.97000 * 119.99672 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1995 0.0000 4 6 3.5763 1.2052 -0.0058 5 6 4.2754 0.0000 -0.0063 6 6 5.7600 0.0000 -0.0119 7 7 6.5607 -1.0750 -0.0067 8 7 7.7771 -0.6465 -0.0181 9 7 7.7667 0.6408 -0.0208 10 1 8.5535 1.2082 -0.0254 11 7 6.5472 1.0573 -0.0172 12 6 3.5765 -1.2047 -0.0004 13 6 2.1961 -1.1991 0.0054 14 16 1.3104 -2.7223 0.0121 15 8 0.3395 -2.6174 1.0445 16 8 2.2863 -3.7541 -0.0351 17 7 0.4707 -2.8073 -1.4126 18 6 1.1925 -2.8586 -2.6864 19 6 0.2477 -3.3412 -3.7889 20 6 0.9901 -3.3934 -5.0994 21 1 2.0317 -3.1111 -5.1415 22 6 0.3399 -3.8026 -6.2442 23 7 0.9876 -3.8477 -7.3879 24 14 -1.4615 -4.2917 -6.1711 25 1 -2.3091 -3.0969 -6.4147 26 1 -1.7389 -5.3157 -7.2102 27 1 -1.7684 -4.8513 -4.8302 28 1 -0.3633 -0.0935 1.0234 29 1 -0.3633 0.9329 -0.4308 30 1 -0.3633 -0.8396 -0.5925 31 1 1.6533 2.1331 0.0004 32 1 4.1134 2.1422 -0.0095 33 1 4.1137 -2.1417 -0.0003 34 1 -0.4992 -2.8231 -1.4037 35 1 1.5625 -1.8639 -2.9347 36 1 2.0326 -3.5478 -2.6005 37 1 -0.1223 -4.3360 -3.5406 38 1 -0.5923 -2.6521 -3.8748 39 1 0.5300 -4.1352 -8.1934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826279834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:09 Heat of formation + Delta-G solvation = 72.340399 kcal Electronic energy + Delta-G solvation = -26369.639635 eV Core-core repulsion = 22442.390771 eV Total energy + Delta-G solvation = -3927.248864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.69909 -39.71074 -37.15011 -35.71958 -35.65859 -34.84758 -34.18180 -32.72600 -32.14172 -31.57891 -29.71911 -27.72930 -25.05507 -24.57703 -23.83435 -23.24895 -21.71817 -20.92374 -19.63279 -19.24005 -17.86036 -17.38578 -17.20063 -16.82313 -16.18856 -15.95967 -15.16923 -15.10906 -14.43146 -14.31916 -14.22374 -14.11726 -13.85719 -13.80222 -12.77337 -12.72152 -12.63900 -12.57655 -12.38737 -12.11160 -11.93994 -11.80389 -11.70632 -11.60647 -11.60141 -11.40782 -11.32804 -11.12733 -10.80756 -10.46413 -10.07034 -9.89319 -9.61053 -9.33474 -9.03923 -8.85239 -8.60172 -6.10521 -4.10570 0.28915 0.52935 0.76249 0.95525 1.97063 2.00437 3.09690 3.26570 3.34974 3.35518 3.37481 3.37643 3.83149 3.93990 4.38478 4.39303 4.50115 4.63600 4.69764 4.97917 5.07951 5.19772 5.23223 5.23740 5.37745 5.42928 5.57590 5.61815 5.76235 5.86081 5.99287 6.02440 6.07119 6.10800 6.25801 6.47547 6.51581 7.11997 7.20080 7.28152 7.69001 7.89476 8.43342 8.93008 9.50075 11.02436 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.003477 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.123138 B = 8050.885314 C = 9243.925251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 C -0.145 4.145 4 C -0.024 4.024 5 C -0.049 4.049 6 C 0.223 3.777 7 N -0.262 5.262 8 N -0.045 5.045 9 N -0.228 5.228 10 H 0.475 0.525 11 N -0.296 5.296 12 C 0.029 3.971 13 C -0.679 4.679 14 S 2.694 3.306 15 O -0.964 6.964 16 O -0.954 6.954 17 N -1.114 6.114 18 C 0.126 3.874 19 C -0.017 4.017 20 C -0.524 4.524 21 H 0.076 0.924 22 C 0.070 3.930 23 N -0.899 5.899 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.264 1.264 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.158 0.842 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.026 0.974 38 H 0.019 0.981 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.994 13.956 17.580 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 C -0.164 4.164 4 C -0.044 4.044 5 C -0.053 4.053 6 C -0.057 4.057 7 N -0.135 5.135 8 N -0.040 5.040 9 N -0.074 5.074 10 H 0.330 0.670 11 N -0.148 5.148 12 C 0.008 3.992 13 C -0.764 4.764 14 S 2.782 3.218 15 O -0.954 6.954 16 O -0.943 6.943 17 N -0.876 5.876 18 C 0.001 3.999 19 C -0.056 4.056 20 C -0.563 4.563 21 H 0.094 0.906 22 C -0.132 4.132 23 N -0.537 5.537 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.175 0.825 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.829 13.016 18.042 23.272 hybrid contribution -0.802 1.126 -0.580 1.499 sum 6.027 14.141 17.463 23.265 Atomic orbital electron populations 1.21370 0.89846 1.04775 1.04789 1.19743 0.96249 0.91738 0.88091 1.21091 0.93632 0.98063 1.03564 1.21402 0.94312 0.97188 0.91477 1.17200 0.84648 0.94691 1.08767 1.23558 0.96143 0.84476 1.01484 1.76170 0.94606 1.25366 1.17366 1.78958 1.16883 0.93767 1.14427 1.47720 1.07592 1.05958 1.46120 0.67027 1.74873 0.90782 1.26724 1.22427 1.20987 0.91873 0.98722 0.87635 1.30937 1.05641 1.20600 1.19221 1.01925 0.73516 0.73638 0.72686 1.93582 1.59957 1.87152 1.54710 1.93593 1.61795 1.52715 1.86241 1.55588 1.18626 1.90880 1.22537 1.21486 0.95988 1.01060 0.81333 1.19759 0.95315 0.96736 0.93803 1.20958 0.99153 1.45710 0.90483 0.90622 1.24989 0.98156 0.94802 0.95277 1.69902 1.36875 1.47629 0.99316 0.86782 0.85557 0.78692 0.78275 1.20272 1.21304 1.18852 0.88131 0.89586 0.90421 0.84196 0.84227 0.82476 0.74925 0.92256 0.90512 0.95527 0.96256 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.61 36.01 0.31 -1.15 16 2 C 0.04 0.50 5.88 -104.56 -0.61 -0.11 16 3 C -0.14 -1.38 9.66 -39.63 -0.38 -1.77 16 4 C -0.02 -0.24 9.70 -39.26 -0.38 -0.62 16 5 C -0.05 -0.61 5.88 -104.89 -0.62 -1.22 16 6 C 0.22 2.81 7.94 -156.30 -1.24 1.57 16 7 N -0.26 -3.61 12.23 32.16 0.39 -3.21 16 8 N -0.05 -0.51 13.47 60.35 0.81 0.31 16 9 N -0.23 -1.80 7.90 60.35 0.48 -1.33 16 10 H 0.48 1.29 8.96 -340.37 -3.05 -1.77 16 11 N -0.30 -3.02 12.08 32.17 0.39 -2.64 16 12 C 0.03 0.40 9.20 -39.26 -0.36 0.04 16 13 C -0.68 -9.14 5.85 -39.63 -0.23 -9.37 16 14 S 2.69 40.52 4.94 -107.50 -0.53 39.99 16 15 O -0.96 -15.11 16.52 -57.17 -0.94 -16.06 16 16 O -0.95 -17.23 16.46 -57.17 -0.94 -18.17 16 17 N -1.11 -16.71 4.73 -10.61 -0.05 -16.76 16 18 C 0.13 2.32 6.16 -4.04 -0.02 2.29 16 19 C -0.02 -0.38 4.19 -27.87 -0.12 -0.49 16 20 C -0.52 -14.29 9.66 -34.44 -0.33 -14.62 16 21 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 22 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 23 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 24 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.26 -5.96 6.54 56.52 0.37 -5.59 16 28 H 0.10 0.92 8.02 -51.93 -0.42 0.50 16 29 H 0.09 0.62 8.05 -51.93 -0.42 0.21 16 30 H 0.08 0.79 5.39 -51.93 -0.28 0.51 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.14 1.09 7.88 -52.48 -0.41 0.68 16 33 H 0.16 2.23 7.16 -52.48 -0.38 1.86 16 34 H 0.42 5.35 8.30 -34.47 -0.29 5.07 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.47 7.76 -51.93 -0.40 1.07 16 37 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 38 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -35.98 347.49 -9.99 -45.97 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.84 Total: 0.31 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -4.09 Total: -23.60 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: 2.79 Total: -49.88 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.89 Total: -34.23 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 40.52 SS G_CDS: -0.53 Total: 39.99 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.98 -9.99 -45.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826279834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.311 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds