Wall clock time and date at job start Tue Mar 31 2020 19:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38343 * 119.88088 * 2 1 4 4 C 1.38003 * 120.11679 * 180.27653 * 3 2 1 5 5 C 1.39326 * 119.88079 * 359.74702 * 4 3 2 6 6 C 1.48463 * 120.11701 * 180.02562 * 5 4 3 7 7 N 1.34046 * 126.67596 * 179.66513 * 6 5 4 8 8 N 1.28979 * 107.26919 * 179.83674 * 7 6 5 9 9 N 1.28738 * 108.94396 * 0.43160 * 8 7 6 10 10 H 0.97001 * 125.33731 * 179.74897 * 9 8 7 11 11 N 1.28865 * 109.31537 * 359.72451 * 9 8 7 12 12 C 1.39282 * 119.76497 * 359.97438 * 5 4 3 13 13 C 1.38045 * 119.88274 * 0.02562 * 12 5 4 14 14 S 1.76202 * 119.93929 * 179.97438 * 13 12 5 15 15 O 1.42106 * 106.40211 * 131.02073 * 14 13 12 16 16 O 1.42100 * 106.40356 * 358.09755 * 14 13 12 17 17 N 1.65600 * 107.21554 * 244.55725 * 14 13 12 18 18 C 1.46501 * 119.99740 * 63.53176 * 17 14 13 19 19 C 1.53008 * 109.46556 * 163.43517 * 18 17 14 20 20 C 1.50708 * 109.46646 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99950 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99871 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99906 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 120.00006 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47423 * 89.99481 * 24 22 20 26 26 H 1.48499 * 109.46896 * 210.00143 * 24 22 20 27 27 H 1.48505 * 109.46768 * 329.99492 * 24 22 20 28 28 H 1.08997 * 109.46914 * 264.78163 * 1 2 3 29 29 H 1.08993 * 109.47139 * 24.78614 * 1 2 3 30 30 H 1.08997 * 109.46881 * 144.78812 * 1 2 3 31 31 H 1.08001 * 119.93588 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.06153 * 179.76756 * 4 3 2 33 33 H 1.08003 * 120.05697 * 180.02562 * 12 5 4 34 34 H 0.97003 * 119.99697 * 243.53351 * 17 14 13 35 35 H 1.08997 * 109.47079 * 283.43064 * 18 17 14 36 36 H 1.08994 * 109.47275 * 43.43960 * 18 17 14 37 37 H 1.08997 * 109.47056 * 299.99561 * 19 18 17 38 38 H 1.08994 * 109.46967 * 60.00254 * 19 18 17 39 39 H 0.97000 * 119.99672 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1995 0.0000 4 6 3.5763 1.2052 -0.0058 5 6 4.2754 0.0000 -0.0063 6 6 5.7600 0.0000 -0.0119 7 7 6.5607 -1.0750 -0.0067 8 7 7.7771 -0.6465 -0.0181 9 7 7.7667 0.6408 -0.0208 10 1 8.5535 1.2082 -0.0254 11 7 6.5472 1.0573 -0.0172 12 6 3.5765 -1.2047 -0.0004 13 6 2.1961 -1.1991 0.0054 14 16 1.3104 -2.7223 0.0121 15 8 0.3395 -2.6174 1.0445 16 8 2.2863 -3.7541 -0.0351 17 7 0.4707 -2.8073 -1.4126 18 6 1.1925 -2.8586 -2.6864 19 6 0.2477 -3.3412 -3.7889 20 6 0.9901 -3.3934 -5.0994 21 1 2.0317 -3.1111 -5.1415 22 6 0.3399 -3.8026 -6.2442 23 7 0.9876 -3.8477 -7.3879 24 14 -1.4615 -4.2917 -6.1711 25 1 -2.3091 -3.0969 -6.4147 26 1 -1.7389 -5.3157 -7.2102 27 1 -1.7684 -4.8513 -4.8302 28 1 -0.3633 -0.0935 1.0234 29 1 -0.3633 0.9329 -0.4308 30 1 -0.3633 -0.8396 -0.5925 31 1 1.6533 2.1331 0.0004 32 1 4.1134 2.1422 -0.0095 33 1 4.1137 -2.1417 -0.0003 34 1 -0.4992 -2.8231 -1.4037 35 1 1.5625 -1.8639 -2.9347 36 1 2.0326 -3.5478 -2.6005 37 1 -0.1223 -4.3360 -3.5406 38 1 -0.5923 -2.6521 -3.8748 39 1 0.5300 -4.1352 -8.1934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826279834.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:08 Heat of formation + Delta-G solvation = 44.004337 kcal Electronic energy + Delta-G solvation = -26370.868379 eV Core-core repulsion = 22442.390771 eV Total energy + Delta-G solvation = -3928.477608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.54711 -40.57343 -38.42031 -37.15734 -36.99060 -35.72468 -35.06510 -34.69258 -33.00376 -32.45745 -31.50333 -28.53565 -26.39800 -25.91323 -24.68975 -24.14988 -22.75843 -22.51890 -20.62350 -20.29399 -19.13447 -18.67296 -18.35216 -18.22070 -17.35480 -16.85410 -16.28143 -16.22962 -16.08088 -15.65964 -15.51378 -15.20165 -14.90556 -14.65338 -14.58861 -13.64482 -13.59028 -13.47846 -13.42094 -13.40621 -13.30208 -13.25336 -13.08121 -12.92490 -12.57450 -12.48268 -12.32353 -12.23573 -11.97370 -11.83106 -11.77753 -11.70039 -11.42517 -10.74562 -10.49071 -10.37425 -9.71530 -8.25679 -6.31186 -0.70007 -0.50998 -0.17721 0.09449 1.10712 1.35475 1.41013 1.44498 1.55270 1.94300 2.39009 2.40290 2.51901 2.70532 3.05623 3.10326 3.38531 3.64345 3.71699 3.89674 4.10218 4.14313 4.23441 4.36476 4.43196 4.49859 4.53384 4.66971 4.73671 4.77984 4.87603 4.92271 5.14165 5.17872 5.23261 5.39943 5.48952 5.55990 5.65028 5.66853 6.09946 6.29792 6.77040 7.03070 7.33330 8.90774 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.003477 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.123138 B = 8050.885314 C = 9243.925251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.038 3.962 3 C -0.134 4.134 4 C -0.015 4.015 5 C -0.060 4.060 6 C 0.208 3.792 7 N -0.302 5.302 8 N -0.055 5.055 9 N -0.196 5.196 10 H 0.496 0.504 11 N -0.285 5.285 12 C 0.007 3.993 13 C -0.689 4.689 14 S 2.708 3.292 15 O -0.970 6.970 16 O -0.992 6.992 17 N -1.106 6.106 18 C 0.138 3.862 19 C -0.016 4.016 20 C -0.534 4.534 21 H 0.036 0.964 22 C 0.006 3.994 23 N -0.951 5.951 24 Si 0.950 3.050 25 H -0.261 1.261 26 H -0.290 1.290 27 H -0.242 1.242 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.182 0.818 32 H 0.167 0.833 33 H 0.138 0.862 34 H 0.427 0.573 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 16.582 18.801 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 C -0.152 4.152 4 C -0.035 4.035 5 C -0.065 4.065 6 C -0.072 4.072 7 N -0.174 5.174 8 N -0.050 5.050 9 N -0.047 5.047 10 H 0.356 0.644 11 N -0.138 5.138 12 C -0.015 4.015 13 C -0.777 4.777 14 S 2.800 3.200 15 O -0.960 6.960 16 O -0.982 6.982 17 N -0.869 5.869 18 C 0.012 3.988 19 C -0.055 4.055 20 C -0.573 4.573 21 H 0.054 0.946 22 C -0.191 4.191 23 N -0.591 5.591 24 Si 0.773 3.227 25 H -0.186 1.186 26 H -0.216 1.216 27 H -0.165 1.165 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.199 0.801 32 H 0.185 0.815 33 H 0.156 0.844 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.039 15.617 19.294 25.329 hybrid contribution -0.066 0.453 -0.927 1.034 sum 4.973 16.071 18.367 24.906 Atomic orbital electron populations 1.21519 0.88461 1.06144 1.05306 1.20097 0.97377 0.91533 0.87440 1.21559 0.93453 0.98874 1.01337 1.21766 0.94813 0.97169 0.89788 1.17362 0.84822 0.95105 1.09190 1.23686 0.96526 0.84678 1.02261 1.76156 0.95528 1.26751 1.18984 1.78891 1.16174 0.94888 1.15055 1.47799 1.07945 1.05482 1.43504 0.64421 1.74824 0.91120 1.25835 1.21979 1.20906 0.92245 0.98886 0.89456 1.30536 1.05329 1.20302 1.21550 1.01212 0.72880 0.73705 0.72242 1.93566 1.60271 1.87508 1.54624 1.93545 1.62800 1.55264 1.86635 1.55309 1.19220 1.91194 1.21146 1.21116 0.94952 1.00989 0.81711 1.19694 0.96007 0.97561 0.92245 1.21322 0.97990 1.44857 0.93093 0.94588 1.25994 1.03590 0.94863 0.94687 1.70068 1.39267 1.49448 1.00335 0.85659 0.79099 0.78756 0.79142 1.18605 1.21643 1.16522 0.87564 0.86535 0.91185 0.80107 0.81535 0.84393 0.73537 0.91373 0.92224 0.95288 0.94023 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.61 71.24 0.61 -1.94 16 2 C 0.04 0.77 5.88 -19.82 -0.12 0.65 16 3 C -0.13 -2.06 9.66 22.24 0.21 -1.85 16 4 C -0.02 -0.27 9.70 22.48 0.22 -0.05 16 5 C -0.06 -1.47 5.88 -20.04 -0.12 -1.59 16 6 C 0.21 5.17 7.94 137.38 1.09 6.26 16 7 N -0.30 -8.54 12.23 -52.18 -0.64 -9.18 16 8 N -0.06 -1.23 13.47 37.02 0.50 -0.73 16 9 N -0.20 -2.82 7.90 37.02 0.29 -2.53 16 10 H 0.50 1.69 8.96 -347.53 -3.12 -1.43 16 11 N -0.28 -5.36 12.08 -52.13 -0.63 -5.99 16 12 C 0.01 0.19 9.20 22.48 0.21 0.40 16 13 C -0.69 -18.30 5.85 22.24 0.13 -18.17 16 14 S 2.71 81.74 4.94 -56.49 -0.28 81.47 16 15 O -0.97 -29.71 16.52 -128.00 -2.11 -31.82 16 16 O -0.99 -37.48 16.46 -128.00 -2.11 -39.58 16 17 N -1.11 -32.25 4.73 -187.49 -0.89 -33.14 16 18 C 0.14 5.07 6.16 86.38 0.53 5.61 16 19 C -0.02 -0.69 4.19 29.85 0.13 -0.57 16 20 C -0.53 -29.62 9.66 25.60 0.25 -29.38 16 21 H 0.04 2.21 7.99 -2.91 -0.02 2.18 16 22 C 0.01 0.32 5.47 84.65 0.46 0.79 16 23 N -0.95 -58.67 13.96 21.45 0.30 -58.37 16 24 Si 0.95 42.32 27.47 68.60 1.88 44.20 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 27 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 28 H 0.11 1.62 8.02 -2.39 -0.02 1.60 16 29 H 0.12 1.15 8.05 -2.39 -0.02 1.14 16 30 H 0.07 1.25 5.39 -2.39 -0.01 1.23 16 31 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 32 H 0.17 1.95 7.88 -2.91 -0.02 1.93 16 33 H 0.14 4.32 7.16 -2.91 -0.02 4.30 16 34 H 0.43 10.22 8.30 -96.74 -0.80 9.42 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.06 2.38 7.76 -2.39 -0.02 2.37 16 37 H 0.03 1.24 7.20 -2.39 -0.02 1.22 16 38 H 0.04 1.63 7.57 -2.39 -0.02 1.61 16 39 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -80.55 347.49 -2.91 -83.46 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -2.84 Total: 12.05 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 3.61 Total: -39.83 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -1.07 Total: -109.94 kcal Atomic # 8 Polarization: -67.19 SS G_CDS: -4.22 Total: -71.41 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Atomic # 16 Polarization: 81.74 SS G_CDS: -0.28 Total: 81.47 kcal Total: -80.55 -2.91 -83.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826279834.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.466 kcal (2) G-P(sol) polarization free energy of solvation -80.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds