Wall clock time and date at job start Tue Mar 31 2020 19:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38046 * 120.06026 * 2 1 4 4 C 1.38298 * 120.11976 * 180.02562 * 3 2 1 5 5 C 1.38339 * 120.23409 * 0.27507 * 4 3 2 6 6 C 1.38010 * 120.11734 * 359.44591 * 5 4 3 7 7 S 1.76198 * 120.06280 * 180.25623 * 6 5 4 8 8 O 1.42096 * 106.40044 * 356.94047 * 7 6 5 9 9 O 1.42093 * 106.40445 * 129.86670 * 7 6 5 10 10 N 1.65606 * 107.21717 * 243.40566 * 7 6 5 11 11 C 1.46503 * 119.99900 * 64.25705 * 10 7 6 12 12 H 1.08996 * 109.46880 * 22.97676 * 11 10 7 13 13 C 1.52998 * 109.46967 * 262.97699 * 11 10 7 14 14 C 1.50700 * 109.46773 * 142.97624 * 11 10 7 15 15 H 1.07995 * 120.00492 * 0.02562 * 14 11 10 16 16 C 1.37878 * 120.00035 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99621 * 0.02562 * 16 14 11 18 18 Si 1.86791 * 120.00399 * 179.97438 * 16 14 11 19 19 H 1.48503 * 109.46872 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47356 * 120.00202 * 18 16 14 21 21 H 1.48495 * 109.47678 * 240.00454 * 18 16 14 22 22 C 1.39283 * 120.05852 * 180.02562 * 2 1 3 23 23 C 1.48465 * 120.11444 * 359.97438 * 22 2 1 24 24 N 1.34051 * 126.66896 * 173.82162 * 23 22 2 25 25 N 1.28985 * 107.26699 * 179.97438 * 24 23 22 26 26 N 1.28734 * 108.94127 * 0.02562 * 25 24 23 27 27 H 0.96999 * 125.33725 * 180.02562 * 26 25 24 28 28 N 1.28864 * 109.32025 * 359.74623 * 26 25 24 29 29 H 1.08996 * 109.47121 * 89.99972 * 1 2 3 30 30 H 1.08997 * 109.47343 * 210.00431 * 1 2 3 31 31 H 1.09001 * 109.46787 * 330.00023 * 1 2 3 32 32 H 1.08002 * 119.94333 * 0.03874 * 3 2 1 33 33 H 1.07993 * 119.88600 * 180.02562 * 4 3 2 34 34 H 1.07994 * 119.94156 * 179.70480 * 5 4 3 35 35 H 0.96999 * 120.00075 * 244.25805 * 10 7 6 36 36 H 1.09011 * 109.47026 * 300.00016 * 13 11 10 37 37 H 1.09001 * 109.47520 * 59.99974 * 13 11 10 38 38 H 1.09001 * 109.47191 * 180.02562 * 13 11 10 39 39 H 0.96999 * 119.99612 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1948 0.0000 4 6 3.5815 1.1962 -0.0005 5 6 4.2793 0.0017 -0.0068 6 6 3.5979 -1.1984 -0.0010 7 16 4.4882 -2.7189 -0.0022 8 8 5.8652 -2.3775 -0.0824 9 8 3.9420 -3.5045 1.0483 10 7 4.1179 -3.5026 -1.4133 11 6 4.5038 -2.9169 -2.6995 12 1 5.3379 -2.2312 -2.5508 13 6 3.3158 -2.1546 -3.2897 14 6 4.9177 -4.0135 -3.6468 15 1 4.8952 -5.0437 -3.3233 16 6 5.3242 -3.7018 -4.9268 17 7 5.3513 -2.4473 -5.3210 18 14 5.8380 -5.0609 -6.1008 19 1 5.7192 -6.3748 -5.4191 20 1 4.9566 -5.0422 -7.2958 21 1 7.2460 -4.8463 -6.5208 22 6 2.2047 -1.2055 -0.0005 23 6 1.4662 -2.4935 -0.0005 24 7 1.9954 -3.7197 -0.1167 25 7 1.0208 -4.5633 -0.0699 26 7 -0.0843 -3.9177 0.0690 27 1 -0.9649 -4.3197 0.1310 28 7 0.1634 -2.6541 0.1187 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6585 2.1301 0.0006 33 1 4.1186 2.1331 -0.0001 34 1 5.3592 0.0084 -0.0120 35 1 3.6455 -4.3494 -1.3882 36 1 2.4816 -2.8404 -3.4384 37 1 3.0164 -1.3615 -2.6045 38 1 3.6028 -1.7192 -4.2469 39 1 5.6376 -2.2280 -6.2214 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826302643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:55 Heat of formation + Delta-G solvation = 107.320549 kcal Electronic energy + Delta-G solvation = -28494.572775 eV Core-core repulsion = 24568.840764 eV Total energy + Delta-G solvation = -3925.732011 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.38094 -39.43930 -36.50743 -35.37729 -35.04722 -34.23970 -33.94267 -32.52510 -32.02719 -30.70711 -28.15661 -27.24409 -25.17157 -24.64722 -24.40121 -22.55213 -21.24173 -20.73822 -19.23993 -18.58184 -17.35192 -17.09984 -17.03058 -16.33710 -15.80357 -15.51916 -15.04172 -14.63214 -14.34081 -13.96694 -13.86962 -13.56981 -13.40137 -12.68077 -12.55016 -12.39545 -12.23885 -12.08249 -11.85375 -11.53840 -11.42501 -11.37638 -11.27310 -11.12073 -10.96974 -10.93193 -10.89844 -10.60543 -10.49112 -10.32130 -10.22998 -9.97622 -9.18254 -9.05096 -8.60179 -8.50694 -8.09061 -6.04533 -4.10065 0.50779 1.05732 1.28717 1.31478 2.27769 2.41702 3.30325 3.38244 3.43092 3.53746 3.62932 3.94867 4.19452 4.42381 4.47912 4.70642 4.80484 5.05925 5.22522 5.26718 5.28537 5.36126 5.49012 5.59629 5.66249 5.72257 5.84590 6.11770 6.15123 6.25540 6.34198 6.53511 6.55555 6.81030 6.85849 6.92997 7.10944 7.68358 7.76421 8.05317 8.17739 8.21123 8.43926 8.94091 9.55093 11.01837 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.012443 B = 0.005221 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.732547 B = 5361.555438 C = 5864.245273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.069 4.069 3 C -0.079 4.079 4 C -0.118 4.118 5 C -0.027 4.027 6 C -0.630 4.630 7 S 2.693 3.307 8 O -0.969 6.969 9 O -0.962 6.962 10 N -1.081 6.081 11 C 0.268 3.732 12 H 0.049 0.951 13 C -0.152 4.152 14 C -0.513 4.513 15 H 0.065 0.935 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.283 1.283 22 C 0.079 3.921 23 C 0.203 3.797 24 N -0.239 5.239 25 N -0.033 5.033 26 N -0.235 5.235 27 H 0.473 0.527 28 N -0.285 5.285 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.415 0.585 36 H 0.027 0.973 37 H 0.009 0.991 38 H 0.092 0.908 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.508 6.126 10.557 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 C -0.097 4.097 4 C -0.137 4.137 5 C -0.046 4.046 6 C -0.715 4.715 7 S 2.778 3.222 8 O -0.959 6.959 9 O -0.951 6.951 10 N -0.845 5.845 11 C 0.163 3.837 12 H 0.067 0.933 13 C -0.212 4.212 14 C -0.553 4.553 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.209 1.209 22 C 0.075 3.925 23 C -0.077 4.077 24 N -0.113 5.113 25 N -0.029 5.029 26 N -0.079 5.079 27 H 0.327 0.673 28 N -0.137 5.137 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.252 0.748 36 H 0.046 0.954 37 H 0.028 0.972 38 H 0.110 0.890 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.870 5.458 11.030 17.098 hybrid contribution -1.002 -0.098 -1.055 1.459 sum -12.872 5.360 9.975 17.144 Atomic orbital electron populations 1.21210 0.89987 1.04249 1.03237 1.19965 0.96793 0.91614 0.98846 1.21182 0.94374 0.97235 0.96914 1.21414 0.94313 0.98479 0.99504 1.20975 1.00980 0.90513 0.92181 1.31488 1.04381 1.22630 1.12980 1.01927 0.73554 0.73084 0.73635 1.93552 1.30781 1.84566 1.87001 1.93535 1.79554 1.67061 1.54958 1.55455 1.74275 1.33615 1.21116 1.18570 0.92660 0.93688 0.78797 0.93302 1.22233 0.98498 0.97838 1.02629 1.21293 1.44099 0.93375 0.96518 0.91654 1.24912 0.95394 0.95715 0.97996 1.69882 1.47627 1.16680 1.18751 0.86419 0.78198 0.82103 0.80555 1.19650 1.21151 1.20898 1.16488 0.89969 0.86991 0.99056 1.23637 0.87174 0.94260 1.02627 1.76088 1.21564 0.97883 1.15772 1.78920 0.88244 1.21900 1.13822 1.47822 1.11791 1.02353 1.45948 0.67303 1.74839 1.17135 0.99356 1.22336 0.90800 0.88278 0.91538 0.84865 0.84679 0.83247 0.74752 0.95393 0.97178 0.88970 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 9.29 36.01 0.33 -1.05 16 2 C -0.07 -0.94 5.91 -104.30 -0.62 -1.55 16 3 C -0.08 -0.92 9.69 -39.63 -0.38 -1.30 16 4 C -0.12 -1.45 10.04 -39.52 -0.40 -1.85 16 5 C -0.03 -0.43 9.54 -39.63 -0.38 -0.81 16 6 C -0.63 -11.33 5.03 -39.26 -0.20 -11.53 16 7 S 2.69 56.19 4.88 -107.50 -0.52 55.67 16 8 O -0.97 -22.41 16.35 -57.17 -0.93 -23.35 16 9 O -0.96 -20.77 15.05 -57.17 -0.86 -21.63 16 10 N -1.08 -23.87 4.32 -5.88 -0.03 -23.90 16 11 C 0.27 6.69 2.89 -69.08 -0.20 6.49 16 12 H 0.05 1.33 7.52 -51.93 -0.39 0.94 16 13 C -0.15 -3.60 9.29 37.16 0.35 -3.26 16 14 C -0.51 -13.94 8.77 -34.44 -0.30 -14.24 16 15 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.82 11.32 55.43 0.63 -24.19 16 18 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.08 1.32 5.31 -104.89 -0.56 0.76 16 23 C 0.20 3.40 7.46 -156.30 -1.17 2.23 16 24 N -0.24 -4.35 5.63 32.16 0.18 -4.17 16 25 N -0.03 -0.50 13.47 60.35 0.81 0.31 16 26 N -0.23 -2.61 7.90 60.35 0.48 -2.13 16 27 H 0.47 2.60 8.96 -340.37 -3.05 -0.45 16 28 N -0.29 -3.79 8.93 32.17 0.29 -3.50 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.09 5.04 -51.93 -0.26 0.83 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.15 2.24 7.33 -52.49 -0.38 1.85 16 35 H 0.42 8.85 7.35 -34.48 -0.25 8.60 16 36 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 37 H 0.01 0.20 6.64 -51.93 -0.34 -0.14 16 38 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -34.67 332.76 -10.24 -44.91 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.66 Total: 5.35 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -3.61 Total: -24.52 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: 2.36 Total: -57.58 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.80 Total: -44.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 56.19 SS G_CDS: -0.52 Total: 55.67 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.67 -10.24 -44.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826302643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.228 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds