Wall clock time and date at job start Tue Mar 31 2020 19:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38052 * 120.05789 * 2 1 4 4 C 1.38295 * 120.11739 * 180.02562 * 3 2 1 5 5 C 1.38337 * 120.23662 * 359.70677 * 4 3 2 6 6 C 1.38010 * 120.11596 * 0.55327 * 5 4 3 7 7 S 1.76203 * 120.06214 * 179.74564 * 6 5 4 8 8 O 1.42104 * 106.40074 * 129.54396 * 7 6 5 9 9 O 1.42105 * 106.39760 * 356.62584 * 7 6 5 10 10 N 1.65600 * 107.21947 * 243.08415 * 7 6 5 11 11 C 1.46502 * 119.99904 * 61.49961 * 10 7 6 12 12 C 1.53002 * 109.46724 * 165.43648 * 11 10 7 13 13 C 1.50707 * 109.46718 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99936 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00181 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99988 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47183 * 89.99620 * 17 15 13 19 19 H 1.48502 * 109.47364 * 209.99710 * 17 15 13 20 20 H 1.48506 * 109.47142 * 330.00040 * 17 15 13 21 21 C 1.39280 * 120.06003 * 179.97438 * 2 1 3 22 22 C 1.48457 * 120.11682 * 0.03396 * 21 2 1 23 23 N 1.34054 * 126.67447 * 173.45050 * 22 21 2 24 24 N 1.28980 * 107.26989 * 180.02562 * 23 22 21 25 25 N 1.28740 * 108.94550 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.34408 * 180.02562 * 25 24 23 27 27 N 1.28873 * 109.31406 * 359.73052 * 25 24 23 28 28 H 1.09000 * 109.46653 * 270.01888 * 1 2 3 29 29 H 1.09000 * 109.47230 * 30.01106 * 1 2 3 30 30 H 1.08995 * 109.47384 * 150.02217 * 1 2 3 31 31 H 1.08005 * 119.94192 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.88252 * 180.02562 * 4 3 2 33 33 H 1.07992 * 119.94728 * 180.29757 * 5 4 3 34 34 H 0.96992 * 119.99762 * 241.50465 * 10 7 6 35 35 H 1.08997 * 109.47207 * 285.44171 * 11 10 7 36 36 H 1.09000 * 109.46765 * 45.44236 * 11 10 7 37 37 H 1.08995 * 109.46949 * 299.99687 * 12 11 10 38 38 H 1.09000 * 109.47020 * 60.00743 * 12 11 10 39 39 H 0.96996 * 119.99944 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1949 0.0000 4 6 3.5814 1.1963 -0.0005 5 6 4.2793 0.0019 0.0050 6 6 3.5979 -1.1983 -0.0004 7 16 4.4883 -2.7188 0.0000 8 8 3.9378 -3.5059 1.0473 9 8 5.8657 -2.3772 -0.0739 10 7 4.1239 -3.5006 -1.4136 11 6 4.4611 -2.8846 -2.6993 12 6 4.3621 -3.9334 -3.8089 13 6 4.7096 -3.2998 -5.1314 14 1 4.9750 -2.2539 -5.1759 15 6 4.6898 -4.0557 -6.2843 16 7 4.9926 -3.5028 -7.4385 17 14 4.2314 -5.8650 -6.2071 18 1 2.7639 -6.0118 -6.3815 19 1 4.9345 -6.6004 -7.2888 20 1 4.6313 -6.4212 -4.8895 21 6 2.2047 -1.2055 0.0005 22 6 1.4664 -2.4934 0.0004 23 7 1.9949 -3.7193 -0.1218 24 7 1.0205 -4.5630 -0.0739 25 7 -0.0841 -3.9179 0.0714 26 1 -0.9645 -4.3200 0.1356 27 7 0.1640 -2.6544 0.1245 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6585 2.1302 -0.0004 32 1 4.1185 2.1333 -0.0001 33 1 5.3592 0.0085 0.0095 34 1 3.6871 -4.3663 -1.3903 35 1 3.7662 -2.0706 -2.9056 36 1 5.4776 -2.4932 -2.6591 37 1 5.0571 -4.7473 -3.6025 38 1 3.3456 -4.3248 -3.8491 39 1 4.9790 -4.0347 -8.2495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826303683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:46 Heat of formation + Delta-G solvation = 102.413360 kcal Electronic energy + Delta-G solvation = -27675.797368 eV Core-core repulsion = 23749.852565 eV Total energy + Delta-G solvation = -3925.944803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.59788 -39.67838 -36.88641 -35.46513 -35.43531 -34.45505 -34.15775 -32.76773 -32.59364 -30.94205 -29.56104 -27.47418 -24.91765 -24.69172 -24.33830 -22.82847 -21.42446 -20.78185 -19.44066 -18.96413 -17.63986 -17.30057 -17.06953 -16.65087 -16.42519 -15.94801 -15.18829 -14.79457 -14.28613 -14.16604 -14.07904 -13.98397 -13.82763 -13.73050 -12.87713 -12.58801 -12.55685 -12.37041 -12.25106 -11.87951 -11.74973 -11.70430 -11.60400 -11.50120 -11.31132 -11.19809 -11.08663 -10.88103 -10.65826 -10.38241 -9.95559 -9.80936 -9.41407 -9.27276 -8.87111 -8.76990 -8.55206 -6.06916 -4.05955 0.24658 0.76812 0.91131 1.08673 2.08940 2.17617 3.24421 3.29675 3.37950 3.38317 3.42764 3.51219 3.95498 4.07028 4.42502 4.43538 4.59271 4.81191 5.01479 5.01952 5.10789 5.26968 5.27373 5.31606 5.47077 5.50669 5.59906 5.81504 5.88627 5.93456 6.02216 6.12838 6.17868 6.31640 6.44166 6.56049 6.63591 7.23553 7.33940 7.61275 7.78382 7.98545 8.48275 8.96738 9.54639 11.06081 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004500 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.430998 B = 6221.047497 C = 6701.866758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.067 4.067 3 C -0.074 4.074 4 C -0.117 4.117 5 C -0.027 4.027 6 C -0.638 4.638 7 S 2.700 3.300 8 O -0.950 6.950 9 O -0.966 6.966 10 N -1.098 6.098 11 C 0.127 3.873 12 C -0.016 4.016 13 C -0.521 4.521 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.878 3.122 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.263 1.263 21 C 0.078 3.922 22 C 0.196 3.804 23 N -0.248 5.248 24 N -0.030 5.030 25 N -0.231 5.231 26 H 0.475 0.525 27 N -0.279 5.279 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.421 0.579 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.027 0.973 38 H 0.016 0.984 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 7.123 18.065 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.070 4.070 3 C -0.092 4.092 4 C -0.136 4.136 5 C -0.046 4.046 6 C -0.724 4.724 7 S 2.786 3.214 8 O -0.939 6.939 9 O -0.956 6.956 10 N -0.862 5.862 11 C 0.002 3.998 12 C -0.055 4.055 13 C -0.560 4.560 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.539 5.539 17 Si 0.705 3.295 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.187 1.187 21 C 0.074 3.926 22 C -0.083 4.083 23 N -0.122 5.122 24 N -0.026 5.026 25 N -0.076 5.076 26 H 0.330 0.670 27 N -0.130 5.130 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.045 0.955 38 H 0.034 0.966 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.425 6.311 18.500 22.641 hybrid contribution -1.511 -0.442 -0.410 1.627 sum -12.935 5.869 18.089 23.000 Atomic orbital electron populations 1.21110 0.89683 1.04094 1.03128 1.20015 0.96987 0.91547 0.98472 1.21261 0.94414 0.97401 0.96122 1.21459 0.94343 0.98590 0.99238 1.21001 1.01022 0.90472 0.92139 1.31298 1.04344 1.22200 1.14517 1.01793 0.73391 0.73009 0.73255 1.93575 1.79208 1.66975 1.54161 1.93568 1.30747 1.84516 1.86791 1.55452 1.77483 1.32318 1.20924 1.21393 0.99714 0.96976 0.81721 1.19727 0.96982 0.95031 0.93739 1.20986 1.46922 0.98537 0.89546 0.90639 1.24976 0.94590 0.98351 0.95301 1.69904 1.49046 1.36547 0.98443 0.86803 0.78680 0.85733 0.78248 1.20436 1.21298 1.18727 1.16505 0.89915 0.87116 0.99073 1.23630 0.87355 0.94179 1.03148 1.76019 1.21871 0.97932 1.16363 1.78918 0.88272 1.21748 1.13677 1.47817 1.11893 1.02272 1.45627 0.67032 1.74958 1.17010 0.99400 1.21679 0.90594 0.91248 0.89017 0.84543 0.84392 0.83058 0.74141 0.92970 0.90904 0.95497 0.96553 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.11 36.01 0.33 -0.77 16 2 C -0.07 -0.76 5.91 -104.30 -0.62 -1.38 16 3 C -0.07 -0.70 9.69 -39.63 -0.38 -1.08 16 4 C -0.12 -1.15 10.04 -39.52 -0.40 -1.55 16 5 C -0.03 -0.34 9.54 -39.63 -0.38 -0.72 16 6 C -0.64 -9.49 5.83 -39.26 -0.23 -9.72 16 7 S 2.70 46.41 4.90 -107.50 -0.53 45.89 16 8 O -0.95 -17.62 15.04 -57.17 -0.86 -18.48 16 9 O -0.97 -18.40 16.57 -57.17 -0.95 -19.35 16 10 N -1.10 -19.67 4.80 -10.61 -0.05 -19.72 16 11 C 0.13 2.56 6.11 -4.04 -0.02 2.53 16 12 C -0.02 -0.37 4.18 -27.88 -0.12 -0.49 16 13 C -0.52 -14.63 9.66 -34.44 -0.33 -14.96 16 14 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.48 13.96 55.43 0.77 -26.70 16 17 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.08 1.11 5.87 -104.89 -0.62 0.49 16 22 C 0.20 2.86 7.41 -156.30 -1.16 1.70 16 23 N -0.25 -3.93 5.70 32.16 0.18 -3.75 16 24 N -0.03 -0.41 13.47 60.35 0.81 0.41 16 25 N -0.23 -2.22 7.90 60.35 0.48 -1.74 16 26 H 0.48 2.01 8.96 -340.36 -3.05 -1.04 16 27 N -0.28 -3.23 9.06 32.17 0.29 -2.94 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.09 0.91 5.37 -51.93 -0.28 0.63 16 31 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.15 1.75 7.34 -52.49 -0.39 1.37 16 34 H 0.42 7.30 7.31 -34.47 -0.25 7.05 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.47 7.84 -51.93 -0.41 1.06 16 37 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -36.82 336.82 -10.30 -47.12 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.84 Total: 1.30 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.02 Total: -24.04 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 2.49 Total: -54.44 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.81 Total: -37.83 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.53 Total: 45.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.82 -10.30 -47.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826303683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.533 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds