Wall clock time and date at job start Tue Mar 31 2020 19:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38052 * 120.05789 * 2 1 4 4 C 1.38295 * 120.11739 * 180.02562 * 3 2 1 5 5 C 1.38337 * 120.23662 * 359.70677 * 4 3 2 6 6 C 1.38010 * 120.11596 * 0.55327 * 5 4 3 7 7 S 1.76203 * 120.06214 * 179.74564 * 6 5 4 8 8 O 1.42104 * 106.40074 * 129.54396 * 7 6 5 9 9 O 1.42105 * 106.39760 * 356.62584 * 7 6 5 10 10 N 1.65600 * 107.21947 * 243.08415 * 7 6 5 11 11 C 1.46502 * 119.99904 * 61.49961 * 10 7 6 12 12 C 1.53002 * 109.46724 * 165.43648 * 11 10 7 13 13 C 1.50707 * 109.46718 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99917 * 0.02562 * 13 12 11 15 15 C 1.37870 * 119.99936 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00181 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99988 * 0.02562 * 15 13 12 18 18 H 1.48509 * 109.47183 * 89.99620 * 17 15 13 19 19 H 1.48502 * 109.47364 * 209.99710 * 17 15 13 20 20 H 1.48506 * 109.47142 * 330.00040 * 17 15 13 21 21 C 1.39280 * 120.06003 * 179.97438 * 2 1 3 22 22 C 1.48457 * 120.11682 * 0.03396 * 21 2 1 23 23 N 1.34054 * 126.67447 * 173.45050 * 22 21 2 24 24 N 1.28980 * 107.26989 * 180.02562 * 23 22 21 25 25 N 1.28740 * 108.94550 * 0.02562 * 24 23 22 26 26 H 0.97000 * 125.34408 * 180.02562 * 25 24 23 27 27 N 1.28873 * 109.31406 * 359.73052 * 25 24 23 28 28 H 1.09000 * 109.46653 * 270.01888 * 1 2 3 29 29 H 1.09000 * 109.47230 * 30.01106 * 1 2 3 30 30 H 1.08995 * 109.47384 * 150.02217 * 1 2 3 31 31 H 1.08005 * 119.94192 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.88252 * 180.02562 * 4 3 2 33 33 H 1.07992 * 119.94728 * 180.29757 * 5 4 3 34 34 H 0.96992 * 119.99762 * 241.50465 * 10 7 6 35 35 H 1.08997 * 109.47207 * 285.44171 * 11 10 7 36 36 H 1.09000 * 109.46765 * 45.44236 * 11 10 7 37 37 H 1.08995 * 109.46949 * 299.99687 * 12 11 10 38 38 H 1.09000 * 109.47020 * 60.00743 * 12 11 10 39 39 H 0.96996 * 119.99944 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1949 0.0000 4 6 3.5814 1.1963 -0.0005 5 6 4.2793 0.0019 0.0050 6 6 3.5979 -1.1983 -0.0004 7 16 4.4883 -2.7188 0.0000 8 8 3.9378 -3.5059 1.0473 9 8 5.8657 -2.3772 -0.0739 10 7 4.1239 -3.5006 -1.4136 11 6 4.4611 -2.8846 -2.6993 12 6 4.3621 -3.9334 -3.8089 13 6 4.7096 -3.2998 -5.1314 14 1 4.9750 -2.2539 -5.1759 15 6 4.6898 -4.0557 -6.2843 16 7 4.9926 -3.5028 -7.4385 17 14 4.2314 -5.8650 -6.2071 18 1 2.7639 -6.0118 -6.3815 19 1 4.9345 -6.6004 -7.2888 20 1 4.6313 -6.4212 -4.8895 21 6 2.2047 -1.2055 0.0005 22 6 1.4664 -2.4934 0.0004 23 7 1.9949 -3.7193 -0.1218 24 7 1.0205 -4.5630 -0.0739 25 7 -0.0841 -3.9179 0.0714 26 1 -0.9645 -4.3200 0.1356 27 7 0.1640 -2.6544 0.1245 28 1 -0.3633 0.0003 1.0277 29 1 -0.3634 0.8899 -0.5140 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6585 2.1302 -0.0004 32 1 4.1185 2.1333 -0.0001 33 1 5.3592 0.0085 0.0095 34 1 3.6871 -4.3663 -1.3903 35 1 3.7662 -2.0706 -2.9056 36 1 5.4776 -2.4932 -2.6591 37 1 5.0571 -4.7473 -3.6025 38 1 3.3456 -4.3248 -3.8491 39 1 4.9790 -4.0347 -8.2495 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826303683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:45 Heat of formation + Delta-G solvation = 74.368251 kcal Electronic energy + Delta-G solvation = -27677.013495 eV Core-core repulsion = 23749.852565 eV Total energy + Delta-G solvation = -3927.160930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.100 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.54672 -40.53574 -38.26969 -37.07977 -36.83828 -35.49435 -35.06002 -34.65673 -33.62739 -31.83115 -31.45853 -28.25767 -26.39205 -25.82423 -25.50758 -23.79730 -22.65037 -22.30039 -20.41013 -20.24425 -19.07717 -18.56136 -18.29356 -18.15194 -17.45845 -17.18957 -16.30299 -16.24470 -15.72867 -15.55859 -15.49460 -15.09310 -14.87723 -14.66161 -14.61988 -13.71376 -13.51251 -13.47662 -13.32390 -13.27811 -13.22457 -13.10260 -13.06452 -12.90545 -12.45510 -12.30758 -12.20052 -12.07959 -11.86871 -11.80993 -11.77055 -11.61256 -11.44588 -10.77349 -10.29625 -10.24869 -9.72613 -8.28739 -6.33153 -0.71653 -0.43890 -0.02724 0.14110 1.19972 1.35603 1.37061 1.39097 1.50785 2.05372 2.36523 2.45189 2.47660 2.80889 3.00023 3.06677 3.41723 3.80606 3.92211 4.03395 4.20326 4.22831 4.24618 4.35818 4.43477 4.48454 4.68215 4.73392 4.80807 4.85412 4.89476 5.01154 5.22771 5.27267 5.34891 5.38089 5.45104 5.62738 5.63898 5.79310 6.19627 6.31556 6.73751 7.01535 7.31114 8.87365 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.004500 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.430998 B = 6221.047497 C = 6701.866758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.071 4.071 3 C -0.062 4.062 4 C -0.110 4.110 5 C -0.044 4.044 6 C -0.656 4.656 7 S 2.710 3.290 8 O -0.968 6.968 9 O -0.995 6.995 10 N -1.097 6.097 11 C 0.140 3.860 12 C -0.013 4.013 13 C -0.530 4.530 14 H 0.042 0.958 15 C 0.011 3.989 16 N -0.946 5.946 17 Si 0.944 3.056 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.248 1.248 21 C 0.053 3.947 22 C 0.176 3.824 23 N -0.285 5.285 24 N -0.046 5.046 25 N -0.201 5.201 26 H 0.496 0.504 27 N -0.262 5.262 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.180 0.820 32 H 0.175 0.825 33 H 0.152 0.848 34 H 0.423 0.577 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 8.086 19.165 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.075 4.075 3 C -0.080 4.080 4 C -0.130 4.130 5 C -0.063 4.063 6 C -0.746 4.746 7 S 2.801 3.199 8 O -0.957 6.957 9 O -0.985 6.985 10 N -0.860 5.860 11 C 0.014 3.986 12 C -0.052 4.052 13 C -0.569 4.569 14 H 0.061 0.939 15 C -0.186 4.186 16 N -0.587 5.587 17 Si 0.767 3.233 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.171 1.171 21 C 0.049 3.951 22 C -0.103 4.103 23 N -0.158 5.158 24 N -0.041 5.041 25 N -0.052 5.052 26 H 0.355 0.645 27 N -0.115 5.115 28 H 0.106 0.894 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.197 0.803 32 H 0.193 0.807 33 H 0.170 0.830 34 H 0.261 0.739 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.623 7.211 19.618 24.949 hybrid contribution -0.931 -0.559 -0.709 1.297 sum -14.554 6.651 18.909 24.771 Atomic orbital electron populations 1.21164 0.87939 1.04736 1.04032 1.20433 0.98369 0.91174 0.97498 1.21806 0.94375 0.98341 0.93436 1.21902 0.94914 0.98798 0.97339 1.21250 1.01425 0.91013 0.92630 1.30763 1.04824 1.21101 1.17944 1.01083 0.72806 0.73483 0.72546 1.93543 1.79373 1.68340 1.54463 1.93524 1.32930 1.85093 1.86995 1.55309 1.77615 1.32854 1.20196 1.21066 0.99611 0.96137 0.81778 1.19636 0.97205 0.95634 0.92694 1.21290 1.46402 0.97444 0.91788 0.93924 1.25885 0.94572 1.03398 0.94794 1.70043 1.50658 1.38601 0.99351 0.85753 0.78933 0.79654 0.78923 1.19156 1.20925 1.17150 1.16764 0.89740 0.88126 1.00497 1.23891 0.88202 0.94222 1.04000 1.75942 1.23143 0.98801 1.17893 1.78834 0.88893 1.21830 1.14585 1.47909 1.12311 1.01767 1.43165 0.64459 1.74953 1.15734 0.99802 1.21017 0.89403 0.88798 0.90146 0.80312 0.80732 0.83003 0.73897 0.92413 0.91597 0.95438 0.95600 0.92414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.11 71.24 0.65 -1.13 16 2 C -0.07 -1.44 5.91 -19.66 -0.12 -1.56 16 3 C -0.06 -0.92 9.69 22.24 0.22 -0.71 16 4 C -0.11 -1.84 10.04 22.31 0.22 -1.61 16 5 C -0.04 -1.07 9.54 22.24 0.21 -0.85 16 6 C -0.66 -19.46 5.83 22.48 0.13 -19.33 16 7 S 2.71 95.68 4.90 -56.49 -0.28 95.40 16 8 O -0.97 -36.90 15.04 -128.00 -1.92 -38.83 16 9 O -1.00 -39.23 16.57 -128.00 -2.12 -41.36 16 10 N -1.10 -40.00 4.80 -187.49 -0.90 -40.90 16 11 C 0.14 5.73 6.11 86.38 0.53 6.26 16 12 C -0.01 -0.60 4.18 29.85 0.12 -0.47 16 13 C -0.53 -30.37 9.66 25.60 0.25 -30.12 16 14 H 0.04 2.64 7.99 -2.91 -0.02 2.62 16 15 C 0.01 0.64 5.47 84.65 0.46 1.10 16 16 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 17 Si 0.94 44.25 27.47 68.60 1.88 46.14 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 21 C 0.05 1.46 5.87 -20.04 -0.12 1.34 16 22 C 0.18 5.03 7.41 137.38 1.02 6.05 16 23 N -0.28 -9.03 5.70 -52.18 -0.30 -9.33 16 24 N -0.05 -1.21 13.47 37.02 0.50 -0.71 16 25 N -0.20 -3.56 7.90 37.02 0.29 -3.27 16 26 H 0.50 3.22 8.96 -347.53 -3.12 0.10 16 27 N -0.26 -5.68 9.06 -52.13 -0.47 -6.16 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 0.91 8.09 -2.39 -0.02 0.89 16 30 H 0.08 1.39 5.37 -2.39 -0.01 1.37 16 31 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 32 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.15 3.53 7.34 -2.91 -0.02 3.51 16 34 H 0.42 14.91 7.31 -96.76 -0.71 14.20 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.07 2.75 7.84 -2.39 -0.02 2.73 16 37 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 38 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.73 336.82 -2.18 -83.91 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -2.74 Total: 14.68 kcal Atomic # 6 Polarization: -44.63 SS G_CDS: 3.58 Total: -41.05 kcal Atomic # 7 Polarization: -118.31 SS G_CDS: -0.58 Total: -118.89 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -4.05 Total: -80.18 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.88 Total: 46.14 kcal Atomic # 16 Polarization: 95.68 SS G_CDS: -0.28 Total: 95.40 kcal Total: -81.73 -2.18 -83.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826303683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.281 kcal (2) G-P(sol) polarization free energy of solvation -81.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds