Wall clock time and date at job start Tue Mar 31 2020 19:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36699 * 126.60072 * 2 1 4 4 C 1.47373 * 125.78238 * 359.97438 * 3 2 1 5 5 O 1.21519 * 119.99557 * 0.02562 * 4 3 2 6 6 O 1.34756 * 120.00287 * 180.02562 * 4 3 2 7 7 C 1.45197 * 116.99830 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46789 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.46897 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00243 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46929 * 59.99879 * 13 11 9 15 15 H 1.48498 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46958 * 300.00250 * 13 11 9 17 17 N 1.34447 * 108.44390 * 179.97438 * 3 2 1 18 18 N 1.28760 * 109.56595 * 359.70385 * 17 3 2 19 19 N 1.35018 * 126.60576 * 179.97438 * 2 1 3 20 20 C 1.40274 * 126.60749 * 0.02562 * 19 2 1 21 21 C 1.38846 * 120.02427 * 325.24982 * 20 19 2 22 22 C 1.38115 * 119.99876 * 180.27884 * 21 20 19 23 23 C 1.38443 * 120.06802 * 359.74286 * 22 21 20 24 24 F 1.35101 * 119.97013 * 180.02562 * 23 22 21 25 25 C 1.38676 * 120.05965 * 359.97438 * 23 22 21 26 26 F 1.35100 * 120.00256 * 180.02562 * 25 23 22 27 27 C 1.38316 * 119.99634 * 0.02562 * 25 23 22 28 28 H 1.09008 * 109.46930 * 270.02514 * 1 2 3 29 29 H 1.08999 * 109.47827 * 30.02531 * 1 2 3 30 30 H 1.08994 * 109.47096 * 150.03035 * 1 2 3 31 31 H 1.08999 * 109.47422 * 299.99938 * 7 6 4 32 32 H 1.09004 * 109.47117 * 60.00347 * 7 6 4 33 33 H 1.08999 * 109.47455 * 299.99723 * 8 7 6 34 34 H 1.08999 * 109.47273 * 60.00651 * 8 7 6 35 35 H 0.97004 * 119.99468 * 180.02562 * 12 11 9 36 36 H 1.07994 * 120.00226 * 0.04136 * 21 20 19 37 37 H 1.08000 * 119.96477 * 179.72798 * 22 21 20 38 38 H 1.08002 * 120.03023 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8760 2.5021 -0.0005 5 8 0.6891 2.7626 -0.0006 6 8 2.7844 3.4975 -0.0010 7 6 2.2730 4.8564 -0.0009 8 6 3.4435 5.8417 -0.0008 9 6 2.9128 7.2522 -0.0001 10 1 1.8472 7.4282 0.0006 11 6 3.7876 8.3180 -0.0005 12 7 5.0851 8.1035 -0.0019 13 14 3.1298 10.0663 0.0011 14 1 2.3015 10.2824 1.2146 15 1 4.2659 11.0226 -0.0002 16 1 2.2990 10.2837 -1.2104 17 7 3.5996 0.6785 0.0006 18 7 3.6313 -0.6087 0.0072 19 7 2.3121 -1.0839 0.0005 20 6 1.9070 -2.4268 0.0006 21 6 0.7605 -2.8066 0.6855 22 6 0.3652 -4.1300 0.6900 23 6 1.1083 -5.0781 0.0077 24 9 0.7196 -6.3720 0.0130 25 6 2.2506 -4.7008 -0.6821 26 9 2.9746 -5.6269 -1.3479 27 6 2.6488 -3.3762 -0.6883 28 1 -0.3633 0.0005 1.0278 29 1 -0.3635 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5133 31 1 1.6638 5.0155 -0.8907 32 1 1.6645 5.0156 0.8893 33 1 4.0524 5.6826 0.8891 34 1 4.0523 5.6827 -0.8909 35 1 5.7006 8.8534 -0.0018 36 1 0.1798 -2.0678 1.2178 37 1 -0.5242 -4.4254 1.2266 38 1 3.5386 -3.0818 -1.2250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829641424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:40 Heat of formation + Delta-G solvation = -50.490790 kcal Electronic energy + Delta-G solvation = -27116.245761 eV Core-core repulsion = 22597.537398 eV Total energy + Delta-G solvation = -4518.708362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.16321 -49.23095 -42.90639 -40.00143 -39.56605 -36.25474 -35.18300 -33.32712 -33.09850 -31.63464 -30.47813 -29.94555 -28.45162 -25.35138 -24.86972 -24.20662 -23.44998 -21.82952 -20.96615 -20.57591 -19.16445 -18.52324 -17.94158 -17.37418 -17.06574 -16.72712 -16.62509 -16.01126 -15.95520 -15.64575 -15.60613 -15.29877 -14.93999 -14.67223 -14.51700 -14.24898 -13.87179 -13.57354 -13.38561 -13.20018 -12.98386 -12.82948 -12.38169 -12.33941 -12.13470 -11.56150 -11.30748 -11.18363 -11.06315 -10.75455 -10.74244 -10.43911 -9.94243 -9.73411 -9.65316 -9.59511 -9.30186 -9.22023 -8.42046 -6.07847 -4.12715 -0.34449 0.07979 0.84234 1.33817 1.39575 2.41053 2.93608 2.95644 3.03423 3.31184 3.35501 3.38200 3.47147 3.64301 3.71359 3.92616 4.08358 4.14661 4.34545 4.39045 4.60467 4.66077 4.89852 4.95620 4.98883 5.02328 5.14339 5.28320 5.30982 5.41816 5.57973 5.73693 6.03812 6.07450 6.09653 6.62393 6.83175 7.50622 7.59696 7.65423 7.87275 8.10214 8.25115 8.92628 9.51295 11.03480 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.037572 B = 0.001841 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.050532 B =15203.214950 C =15796.500925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.135 3.865 3 C -0.073 4.073 4 C 0.549 3.451 5 O -0.509 6.509 6 O -0.334 6.334 7 C 0.075 3.925 8 C 0.024 3.976 9 C -0.527 4.527 10 H 0.059 0.941 11 C 0.061 3.939 12 N -0.888 5.888 13 Si 0.900 3.100 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.159 5.159 18 N -0.054 5.054 19 N -0.327 5.327 20 C 0.158 3.842 21 C -0.101 4.101 22 C -0.102 4.102 23 C 0.078 3.922 24 F -0.120 7.120 25 C 0.092 3.908 26 F -0.116 7.116 27 C -0.108 4.108 28 H 0.100 0.900 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 -29.197 0.709 31.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.001 3.999 3 C -0.208 4.208 4 C 0.391 3.609 5 O -0.399 6.399 6 O -0.248 6.248 7 C 0.003 3.997 8 C -0.013 4.013 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.526 5.526 13 Si 0.728 3.272 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.033 5.033 18 N -0.032 5.032 19 N -0.106 5.106 20 C 0.066 3.934 21 C -0.122 4.122 22 C -0.121 4.121 23 C 0.057 3.943 24 F -0.098 7.098 25 C 0.071 3.929 26 F -0.095 7.095 27 C -0.129 4.129 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.396 -29.363 0.676 31.156 hybrid contribution -1.063 0.758 -0.131 1.313 sum -11.460 -28.604 0.545 30.819 Atomic orbital electron populations 1.20984 0.83981 1.06267 1.05136 1.21950 0.96320 0.85359 0.96247 1.20257 0.88937 0.93190 1.18424 1.19273 0.84152 0.84300 0.73129 1.90802 1.17363 1.84370 1.47316 1.86691 1.38761 1.17652 1.81742 1.23774 1.00239 0.74528 1.01162 1.19182 0.92088 0.90906 0.99149 1.20923 0.93194 0.89956 1.52480 0.92269 1.24992 0.94807 0.99483 0.94907 1.69973 1.01454 1.31713 1.49498 0.86526 0.78369 0.83615 0.78729 1.20086 1.21151 1.20091 1.74850 1.18648 1.02923 1.06896 1.82269 0.94300 1.03666 1.23013 1.47482 1.07503 1.04222 1.51426 1.17094 0.96182 0.80196 0.99900 1.21131 0.95768 0.96801 0.98503 1.20958 1.00872 0.90946 0.99369 1.17775 0.95000 0.80170 1.01379 1.91585 1.90233 1.33184 1.94801 1.17263 0.91608 0.86748 0.97326 1.91601 1.76025 1.64008 1.77822 1.20861 1.02122 0.89864 1.00054 0.88189 0.86340 0.89862 0.91964 0.91965 0.95183 0.95180 0.92639 0.82619 0.81937 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 8.05 36.01 0.29 -0.44 16 2 C 0.13 1.48 6.85 -81.75 -0.56 0.92 16 3 C -0.07 -1.10 7.02 -83.56 -0.59 -1.68 16 4 C 0.55 9.70 7.96 34.45 0.27 9.98 16 5 O -0.51 -8.95 14.51 -19.28 -0.28 -9.23 16 6 O -0.33 -6.94 10.23 -40.64 -0.42 -7.35 16 7 C 0.08 1.65 5.41 37.16 0.20 1.86 16 8 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 9 C -0.53 -14.76 9.11 -34.44 -0.31 -15.08 16 10 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 13 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 N -0.16 -2.59 12.39 32.84 0.41 -2.19 16 18 N -0.05 -0.75 13.57 60.35 0.82 0.07 16 19 N -0.33 -3.44 3.75 -6.71 -0.03 -3.46 16 20 C 0.16 1.17 6.32 -83.57 -0.53 0.64 16 21 C -0.10 -0.45 8.35 -39.40 -0.33 -0.78 16 22 C -0.10 -0.36 10.02 -39.55 -0.40 -0.76 16 23 C 0.08 0.45 7.31 -39.34 -0.29 0.16 16 24 F -0.12 -0.83 17.18 2.25 0.04 -0.79 16 25 C 0.09 0.63 7.30 -39.39 -0.29 0.34 16 26 F -0.12 -0.96 17.18 2.25 0.04 -0.92 16 27 C -0.11 -0.77 9.76 -39.35 -0.38 -1.15 16 28 H 0.10 0.49 7.80 -51.92 -0.40 0.09 16 29 H 0.12 1.03 6.43 -51.93 -0.33 0.69 16 30 H 0.08 0.34 6.96 -51.93 -0.36 -0.02 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.16 0.40 6.16 -52.49 -0.32 0.08 16 37 H 0.16 0.13 8.06 -52.49 -0.42 -0.29 16 38 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -32.98 349.31 -5.09 -38.07 By element: Atomic # 1 Polarization: -2.65 SS G_CDS: -3.50 Total: -6.15 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.15 Total: -3.90 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 1.94 Total: -31.33 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.70 Total: -16.58 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.08 Total: -1.71 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.98 -5.09 -38.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829641424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.416 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds