Wall clock time and date at job start Tue Mar 31 2020 19:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36699 * 126.60072 * 2 1 4 4 C 1.47373 * 125.78238 * 359.97438 * 3 2 1 5 5 O 1.21519 * 119.99557 * 0.02562 * 4 3 2 6 6 O 1.34756 * 120.00287 * 180.02562 * 4 3 2 7 7 C 1.45197 * 116.99830 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46789 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.46897 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00046 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99609 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00243 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46929 * 59.99879 * 13 11 9 15 15 H 1.48498 * 109.47051 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.46958 * 300.00250 * 13 11 9 17 17 N 1.34447 * 108.44390 * 179.97438 * 3 2 1 18 18 N 1.28760 * 109.56595 * 359.70385 * 17 3 2 19 19 N 1.35018 * 126.60576 * 179.97438 * 2 1 3 20 20 C 1.40274 * 126.60749 * 0.02562 * 19 2 1 21 21 C 1.38846 * 120.02427 * 325.24982 * 20 19 2 22 22 C 1.38115 * 119.99876 * 180.27884 * 21 20 19 23 23 C 1.38443 * 120.06802 * 359.74286 * 22 21 20 24 24 F 1.35101 * 119.97013 * 180.02562 * 23 22 21 25 25 C 1.38676 * 120.05965 * 359.97438 * 23 22 21 26 26 F 1.35100 * 120.00256 * 180.02562 * 25 23 22 27 27 C 1.38316 * 119.99634 * 0.02562 * 25 23 22 28 28 H 1.09008 * 109.46930 * 270.02514 * 1 2 3 29 29 H 1.08999 * 109.47827 * 30.02531 * 1 2 3 30 30 H 1.08994 * 109.47096 * 150.03035 * 1 2 3 31 31 H 1.08999 * 109.47422 * 299.99938 * 7 6 4 32 32 H 1.09004 * 109.47117 * 60.00347 * 7 6 4 33 33 H 1.08999 * 109.47455 * 299.99723 * 8 7 6 34 34 H 1.08999 * 109.47273 * 60.00651 * 8 7 6 35 35 H 0.97004 * 119.99468 * 180.02562 * 12 11 9 36 36 H 1.07994 * 120.00226 * 0.04136 * 21 20 19 37 37 H 1.08000 * 119.96477 * 179.72798 * 22 21 20 38 38 H 1.08002 * 120.03023 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8760 2.5021 -0.0005 5 8 0.6891 2.7626 -0.0006 6 8 2.7844 3.4975 -0.0010 7 6 2.2730 4.8564 -0.0009 8 6 3.4435 5.8417 -0.0008 9 6 2.9128 7.2522 -0.0001 10 1 1.8472 7.4282 0.0006 11 6 3.7876 8.3180 -0.0005 12 7 5.0851 8.1035 -0.0019 13 14 3.1298 10.0663 0.0011 14 1 2.3015 10.2824 1.2146 15 1 4.2659 11.0226 -0.0002 16 1 2.2990 10.2837 -1.2104 17 7 3.5996 0.6785 0.0006 18 7 3.6313 -0.6087 0.0072 19 7 2.3121 -1.0839 0.0005 20 6 1.9070 -2.4268 0.0006 21 6 0.7605 -2.8066 0.6855 22 6 0.3652 -4.1300 0.6900 23 6 1.1083 -5.0781 0.0077 24 9 0.7196 -6.3720 0.0130 25 6 2.2506 -4.7008 -0.6821 26 9 2.9746 -5.6269 -1.3479 27 6 2.6488 -3.3762 -0.6883 28 1 -0.3633 0.0005 1.0278 29 1 -0.3635 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5133 31 1 1.6638 5.0155 -0.8907 32 1 1.6645 5.0156 0.8893 33 1 4.0524 5.6826 0.8891 34 1 4.0523 5.6827 -0.8909 35 1 5.7006 8.8534 -0.0018 36 1 0.1798 -2.0678 1.2178 37 1 -0.5242 -4.4254 1.2266 38 1 3.5386 -3.0818 -1.2250 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829641424.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:40 Heat of formation + Delta-G solvation = -70.248160 kcal Electronic energy + Delta-G solvation = -27117.102504 eV Core-core repulsion = 22597.537398 eV Total energy + Delta-G solvation = -4519.565106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.69865 -49.77128 -43.85784 -41.25707 -40.31289 -37.77358 -36.01377 -35.41294 -33.89968 -32.40985 -32.09500 -30.74148 -29.30481 -27.16637 -25.60190 -25.19243 -24.30017 -23.02313 -22.41994 -21.76538 -20.09527 -19.06811 -18.70917 -18.50198 -18.04455 -17.84765 -17.70745 -17.54394 -17.10070 -16.75969 -16.45682 -16.16678 -15.80634 -15.61271 -15.26227 -15.05142 -14.82092 -14.64132 -14.36209 -14.31061 -14.12907 -13.80342 -13.52940 -13.23374 -13.13218 -13.00441 -12.78436 -12.57373 -12.56746 -12.42521 -12.03819 -11.90886 -11.55220 -11.46810 -11.40553 -10.60802 -10.56952 -10.39033 -9.84797 -8.24319 -6.38274 -0.95872 -0.35593 0.03432 0.24710 0.54521 1.42123 1.47208 1.53414 1.59634 1.75785 1.96919 2.41511 2.48266 2.82928 2.96915 3.09894 3.19656 3.25914 3.45278 3.51926 3.55627 3.70823 4.12331 4.19157 4.26297 4.29116 4.42289 4.53051 4.58613 4.60830 4.65944 4.71639 4.83528 4.94871 5.16600 5.27801 5.46179 5.47705 5.49959 5.74638 6.07005 6.42667 6.70832 6.76266 7.31479 8.88282 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.037572 B = 0.001841 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.050532 B =15203.214950 C =15796.500925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.164 3.836 3 C -0.109 4.109 4 C 0.551 3.449 5 O -0.510 6.510 6 O -0.357 6.357 7 C 0.092 3.908 8 C 0.028 3.972 9 C -0.547 4.547 10 H 0.071 0.929 11 C 0.002 3.998 12 N -0.929 5.929 13 Si 0.977 3.023 14 H -0.263 1.263 15 H -0.283 1.283 16 H -0.264 1.264 17 N -0.199 5.199 18 N -0.072 5.072 19 N -0.313 5.313 20 C 0.131 3.869 21 C -0.080 4.080 22 C -0.080 4.080 23 C 0.079 3.921 24 F -0.126 7.126 25 C 0.077 3.923 26 F -0.130 7.130 27 C -0.111 4.111 28 H 0.132 0.868 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.267 0.733 36 H 0.186 0.814 37 H 0.203 0.797 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 -30.288 1.584 34.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.245 4.245 4 C 0.394 3.606 5 O -0.398 6.398 6 O -0.272 6.272 7 C 0.019 3.981 8 C -0.009 4.009 9 C -0.585 4.585 10 H 0.090 0.910 11 C -0.197 4.197 12 N -0.568 5.568 13 Si 0.800 3.200 14 H -0.188 1.188 15 H -0.208 1.208 16 H -0.189 1.189 17 N -0.073 5.073 18 N -0.051 5.051 19 N -0.092 5.092 20 C 0.040 3.960 21 C -0.100 4.100 22 C -0.098 4.098 23 C 0.059 3.941 24 F -0.104 7.104 25 C 0.056 3.944 26 F -0.108 7.108 27 C -0.132 4.132 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.076 0.924 36 H 0.203 0.797 37 H 0.220 0.780 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.021 -30.505 1.548 33.608 hybrid contribution 0.009 0.838 -0.400 0.929 sum -14.012 -29.666 1.148 32.829 Atomic orbital electron populations 1.21282 0.80518 1.07359 1.07334 1.22456 0.97745 0.83912 0.92968 1.20141 0.89673 0.92695 1.21961 1.19555 0.83826 0.84612 0.72630 1.90781 1.16999 1.84563 1.47495 1.86658 1.40169 1.17622 1.82746 1.23301 0.98025 0.74925 1.01857 1.19000 0.93065 0.92412 0.96457 1.21352 0.93958 0.90794 1.52406 0.91038 1.26047 0.94955 1.04559 0.94144 1.70122 1.03016 1.33288 1.50414 0.85323 0.77861 0.77350 0.79439 1.18795 1.20821 1.18866 1.74817 1.19965 1.04149 1.08406 1.82165 0.96364 1.02786 1.23743 1.47563 1.06374 1.05421 1.49794 1.17419 0.97915 0.78557 1.02087 1.21458 0.94080 0.97737 0.96772 1.21340 1.01087 0.89639 0.97774 1.18016 0.94646 0.80350 1.01114 1.91578 1.90184 1.33823 1.94806 1.17373 0.92385 0.86414 0.98259 1.91564 1.76556 1.64401 1.78317 1.20764 1.01983 0.90152 1.00301 0.85044 0.87784 0.86154 0.91207 0.91092 0.97896 0.97967 0.92437 0.79705 0.78020 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 8.05 71.24 0.57 -0.48 16 2 C 0.16 3.31 6.85 41.71 0.29 3.59 16 3 C -0.11 -3.31 7.02 40.79 0.29 -3.02 16 4 C 0.55 19.69 7.96 70.23 0.56 20.25 16 5 O -0.51 -17.52 14.51 19.77 0.29 -17.23 16 6 O -0.36 -15.39 10.23 -56.66 -0.58 -15.97 16 7 C 0.09 4.13 5.41 71.98 0.39 4.52 16 8 C 0.03 1.54 5.35 29.85 0.16 1.70 16 9 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 10 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 11 C 0.00 0.10 5.46 84.66 0.46 0.56 16 12 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 13 Si 0.98 43.70 29.54 68.60 2.03 45.73 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 N -0.20 -6.79 12.39 -50.02 -0.62 -7.41 16 18 N -0.07 -2.05 13.57 37.02 0.50 -1.55 16 19 N -0.31 -6.17 3.75 -175.13 -0.66 -6.83 16 20 C 0.13 1.63 6.32 38.07 0.24 1.87 16 21 C -0.08 -0.34 8.35 22.39 0.19 -0.16 16 22 C -0.08 -0.18 10.02 22.29 0.22 0.04 16 23 C 0.08 0.70 7.31 22.42 0.16 0.87 16 24 F -0.13 -1.44 17.18 44.97 0.77 -0.67 16 25 C 0.08 0.98 7.30 22.39 0.16 1.14 16 26 F -0.13 -2.15 17.18 44.97 0.77 -1.38 16 27 C -0.11 -1.51 9.76 22.42 0.22 -1.29 16 28 H 0.13 0.59 7.80 -2.38 -0.02 0.57 16 29 H 0.10 1.49 6.43 -2.39 -0.02 1.48 16 30 H 0.12 0.33 6.96 -2.39 -0.02 0.31 16 31 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 33 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.19 -0.23 6.16 -2.91 -0.02 -0.25 16 37 H 0.20 -1.01 8.06 -2.91 -0.02 -1.04 16 38 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -76.13 349.31 8.07 -68.06 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 1.13 Total: -4.89 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.15 Total: -1.29 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -0.49 Total: -72.36 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.29 Total: -33.21 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 1.55 Total: -2.04 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -76.13 8.07 -68.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829641424.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.192 kcal (2) G-P(sol) polarization free energy of solvation -76.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds