Wall clock time and date at job start Tue Mar 31 2020 19:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36705 * 126.60736 * 2 1 4 4 C 1.47365 * 125.77664 * 0.02562 * 3 2 1 5 5 O 1.21523 * 120.00477 * 0.31210 * 4 3 2 6 6 O 1.34761 * 120.00256 * 180.31979 * 4 3 2 7 7 C 1.45200 * 117.00180 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47262 * 29.99702 * 7 6 4 9 9 C 1.52999 * 109.46839 * 269.99523 * 7 6 4 10 10 C 1.50700 * 109.47064 * 149.99482 * 7 6 4 11 11 H 1.08004 * 120.00081 * 0.02562 * 10 7 6 12 12 C 1.37870 * 120.00113 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99931 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00293 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47016 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47238 * 119.99964 * 14 12 10 17 17 H 1.48497 * 109.47421 * 240.00163 * 14 12 10 18 18 N 1.34447 * 108.44436 * 180.29221 * 3 2 1 19 19 N 1.28753 * 109.56916 * 359.74623 * 18 3 2 20 20 N 1.35028 * 126.60478 * 179.85535 * 2 1 3 21 21 C 1.40274 * 126.60425 * 359.97438 * 20 2 1 22 22 C 1.38845 * 120.02418 * 324.96218 * 21 20 2 23 23 C 1.38115 * 119.99906 * 180.25048 * 22 21 20 24 24 C 1.38442 * 120.06798 * 359.75235 * 23 22 21 25 25 F 1.35100 * 119.96993 * 180.02562 * 24 23 22 26 26 C 1.38676 * 120.05965 * 359.97438 * 24 23 22 27 27 F 1.35100 * 120.00256 * 180.02562 * 26 24 23 28 28 C 1.38316 * 119.99634 * 359.97438 * 26 24 23 29 29 H 1.09004 * 109.47276 * 270.14851 * 1 2 3 30 30 H 1.09005 * 109.47361 * 30.14590 * 1 2 3 31 31 H 1.08996 * 109.47464 * 150.14366 * 1 2 3 32 32 H 1.09007 * 109.46753 * 179.97438 * 9 7 6 33 33 H 1.09001 * 109.47340 * 300.00131 * 9 7 6 34 34 H 1.08997 * 109.47022 * 60.00443 * 9 7 6 35 35 H 0.97005 * 120.00478 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00204 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.96500 * 179.72732 * 23 22 21 38 38 H 1.08002 * 120.03023 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8761 2.5019 0.0005 5 8 0.6892 2.7627 0.0068 6 8 2.7845 3.4974 -0.0060 7 6 2.2732 4.8564 -0.0056 8 1 1.3150 4.8840 0.5132 9 6 2.0861 5.3312 -1.4480 10 6 3.2517 5.7610 0.6981 11 1 4.1666 5.3552 1.1041 12 6 2.9796 7.1068 0.8228 13 7 1.8658 7.6010 0.3280 14 14 4.1928 8.2283 1.6945 15 1 5.3588 7.4328 2.1559 16 1 4.6540 9.2831 0.7564 17 1 3.5305 8.8607 2.8635 18 7 3.5996 0.6783 -0.0065 19 7 3.6312 -0.6088 -0.0052 20 7 2.3121 -1.0840 0.0027 21 6 1.9068 -2.4269 0.0066 22 6 0.7641 -2.8057 0.6983 23 6 0.3684 -4.1290 0.7060 24 6 1.1074 -5.0779 0.0204 25 9 0.7183 -6.3717 0.0290 26 6 2.2461 -4.7015 -0.6759 27 9 2.9660 -5.6285 -1.3450 28 6 2.6440 -3.3769 -0.6863 29 1 -0.3634 0.0027 1.0277 30 1 -0.3634 0.8887 -0.5161 31 1 -0.3634 -0.8912 -0.5116 32 1 1.7018 6.3513 -1.4477 33 1 3.0443 5.3036 -1.9669 34 1 1.3783 4.6769 -1.9569 35 1 1.6741 8.5479 0.4160 36 1 0.1866 -2.0664 1.2332 37 1 -0.5181 -4.4238 1.2479 38 1 3.5309 -3.0832 -1.2281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842717598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:44 Heat of formation + Delta-G solvation = -45.668218 kcal Electronic energy + Delta-G solvation = -27758.257095 eV Core-core repulsion = 23239.757856 eV Total energy + Delta-G solvation = -4518.499240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.08522 -49.15351 -42.71550 -39.79892 -39.22794 -35.86668 -35.02919 -33.25075 -32.90616 -31.51057 -30.10894 -29.52293 -28.17885 -25.32475 -24.73947 -24.35952 -23.52178 -21.87172 -21.03683 -19.98147 -18.87909 -18.40466 -17.83163 -17.22202 -16.97397 -16.61339 -16.46157 -16.04636 -15.54503 -15.46538 -15.20776 -14.86664 -14.81064 -14.61745 -14.42636 -14.12380 -13.69356 -13.37031 -13.23704 -12.99973 -12.74219 -12.32939 -12.22566 -12.06861 -11.86720 -11.38090 -11.26645 -11.09233 -11.04030 -10.83565 -10.36183 -10.28162 -9.94676 -9.84370 -9.59990 -9.46283 -9.08260 -8.90869 -8.49510 -6.18461 -4.24454 -0.22564 0.17338 1.01366 1.50497 1.64947 2.51702 3.04553 3.25175 3.29576 3.34110 3.40197 3.43921 3.57364 3.75058 3.88789 4.03497 4.20515 4.32566 4.35299 4.49987 4.74244 4.92535 4.99423 5.08332 5.11002 5.15303 5.16391 5.32246 5.48340 5.65116 5.81261 5.92033 6.25188 6.60287 6.87654 6.88183 7.07944 7.55742 7.69526 7.73244 7.89939 8.12081 8.54617 8.87018 9.40761 10.89154 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.002174 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.859507 B =12874.278953 C =13243.801489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.130 3.870 3 C -0.066 4.066 4 C 0.544 3.456 5 O -0.512 6.512 6 O -0.333 6.333 7 C 0.215 3.785 8 H 0.050 0.950 9 C -0.156 4.156 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.912 3.088 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.160 5.160 19 N -0.060 5.060 20 N -0.329 5.329 21 C 0.162 3.838 22 C -0.102 4.102 23 C -0.102 4.102 24 C 0.075 3.925 25 F -0.121 7.121 26 C 0.091 3.909 27 F -0.117 7.117 28 C -0.110 4.110 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.016 0.984 35 H 0.266 0.734 36 H 0.156 0.844 37 H 0.163 0.837 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.895 -25.085 -0.746 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.003 4.003 3 C -0.202 4.202 4 C 0.385 3.615 5 O -0.402 6.402 6 O -0.247 6.247 7 C 0.163 3.837 8 H 0.067 0.933 9 C -0.213 4.213 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.739 3.261 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.034 5.034 19 N -0.038 5.038 20 N -0.109 5.109 21 C 0.070 3.930 22 C -0.123 4.123 23 C -0.121 4.121 24 C 0.055 3.945 25 F -0.099 7.099 26 C 0.070 3.930 27 F -0.096 7.096 28 C -0.131 4.131 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.180 0.820 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.799 -25.154 -0.800 25.621 hybrid contribution -0.263 0.425 0.246 0.557 sum -5.062 -24.729 -0.554 25.248 Atomic orbital electron populations 1.20960 0.84072 1.06116 1.05080 1.21963 0.96308 0.85366 0.96669 1.20482 0.88667 0.93711 1.17292 1.19253 0.84490 0.84362 0.73363 1.90775 1.17506 1.84251 1.47629 1.86661 1.38810 1.18505 1.80719 1.20770 0.96655 0.71347 0.94955 0.93257 1.22179 0.99065 1.03653 0.96431 1.21075 1.06022 0.92012 1.36527 0.91059 1.24873 0.95893 0.97616 0.95587 1.69901 1.23880 1.14005 1.45037 0.86210 0.80763 0.80057 0.79086 1.19395 1.20715 1.20775 1.74820 1.18908 1.02744 1.06950 1.82221 0.94356 1.03856 1.23399 1.47469 1.07549 1.04112 1.51806 1.17102 0.96089 0.80333 0.99513 1.21143 0.95837 0.96785 0.98493 1.20952 1.00845 0.90956 0.99372 1.17760 0.95137 0.80137 1.01511 1.91578 1.90230 1.33241 1.94856 1.17259 0.91744 0.86724 0.97280 1.91593 1.76260 1.63991 1.77716 1.20857 1.02188 0.89856 1.00165 0.88295 0.86283 0.90086 0.88081 0.94263 0.96446 0.92460 0.82600 0.81993 0.81988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 8.05 36.00 0.29 -0.65 16 2 C 0.13 1.69 6.85 -81.74 -0.56 1.13 16 3 C -0.07 -1.15 7.02 -83.56 -0.59 -1.74 16 4 C 0.54 11.46 7.93 34.44 0.27 11.73 16 5 O -0.51 -10.95 13.99 -19.28 -0.27 -11.22 16 6 O -0.33 -8.16 9.87 -40.66 -0.40 -8.56 16 7 C 0.21 5.73 2.56 -27.88 -0.07 5.66 16 8 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 9 C -0.16 -3.90 9.33 37.16 0.35 -3.56 16 10 C -0.52 -14.61 8.90 -34.44 -0.31 -14.91 16 11 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -24.98 11.32 55.43 0.63 -24.36 16 14 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 N -0.16 -2.90 12.39 32.84 0.41 -2.50 16 19 N -0.06 -0.92 13.57 60.35 0.82 -0.10 16 20 N -0.33 -3.98 3.75 -6.71 -0.03 -4.01 16 21 C 0.16 1.40 6.32 -83.57 -0.53 0.88 16 22 C -0.10 -0.58 8.36 -39.40 -0.33 -0.91 16 23 C -0.10 -0.47 10.02 -39.55 -0.40 -0.87 16 24 C 0.08 0.51 7.31 -39.34 -0.29 0.22 16 25 F -0.12 -0.93 17.18 2.25 0.04 -0.89 16 26 C 0.09 0.71 7.30 -39.39 -0.29 0.42 16 27 F -0.12 -1.05 17.18 2.25 0.04 -1.02 16 28 C -0.11 -0.90 9.76 -39.35 -0.38 -1.28 16 29 H 0.10 0.70 7.80 -51.93 -0.41 0.29 16 30 H 0.12 1.32 6.45 -51.93 -0.33 0.98 16 31 H 0.08 0.47 6.98 -51.93 -0.36 0.11 16 32 H 0.10 2.69 6.07 -51.93 -0.32 2.38 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.16 0.63 6.19 -52.49 -0.32 0.31 16 37 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 38 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 344.27 15.07 5.19 5.19 Total: -1.00 -31.96 344.27 -4.87 -36.83 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -3.35 Total: -3.22 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.92 Total: -2.27 kcal Atomic # 7 Polarization: -32.79 SS G_CDS: 1.83 Total: -30.96 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.67 Total: -19.78 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.08 Total: -1.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.96 -4.87 -36.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842717598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.841 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds