Wall clock time and date at job start Tue Mar 31 2020 19:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36705 * 126.60736 * 2 1 4 4 C 1.47365 * 125.77664 * 0.02562 * 3 2 1 5 5 O 1.21523 * 120.00477 * 0.31210 * 4 3 2 6 6 O 1.34761 * 120.00256 * 180.31979 * 4 3 2 7 7 C 1.45200 * 117.00180 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.47262 * 29.99702 * 7 6 4 9 9 C 1.52999 * 109.46839 * 269.99523 * 7 6 4 10 10 C 1.50700 * 109.47064 * 149.99482 * 7 6 4 11 11 H 1.08004 * 120.00081 * 0.02562 * 10 7 6 12 12 C 1.37870 * 120.00113 * 179.97438 * 10 7 6 13 13 N 1.31511 * 119.99931 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 120.00293 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47016 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47238 * 119.99964 * 14 12 10 17 17 H 1.48497 * 109.47421 * 240.00163 * 14 12 10 18 18 N 1.34447 * 108.44436 * 180.29221 * 3 2 1 19 19 N 1.28753 * 109.56916 * 359.74623 * 18 3 2 20 20 N 1.35028 * 126.60478 * 179.85535 * 2 1 3 21 21 C 1.40274 * 126.60425 * 359.97438 * 20 2 1 22 22 C 1.38845 * 120.02418 * 324.96218 * 21 20 2 23 23 C 1.38115 * 119.99906 * 180.25048 * 22 21 20 24 24 C 1.38442 * 120.06798 * 359.75235 * 23 22 21 25 25 F 1.35100 * 119.96993 * 180.02562 * 24 23 22 26 26 C 1.38676 * 120.05965 * 359.97438 * 24 23 22 27 27 F 1.35100 * 120.00256 * 180.02562 * 26 24 23 28 28 C 1.38316 * 119.99634 * 359.97438 * 26 24 23 29 29 H 1.09004 * 109.47276 * 270.14851 * 1 2 3 30 30 H 1.09005 * 109.47361 * 30.14590 * 1 2 3 31 31 H 1.08996 * 109.47464 * 150.14366 * 1 2 3 32 32 H 1.09007 * 109.46753 * 179.97438 * 9 7 6 33 33 H 1.09001 * 109.47340 * 300.00131 * 9 7 6 34 34 H 1.08997 * 109.47022 * 60.00443 * 9 7 6 35 35 H 0.97005 * 120.00478 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00204 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.96500 * 179.72732 * 23 22 21 38 38 H 1.08002 * 120.03023 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3221 1.0974 0.0000 4 6 1.8761 2.5019 0.0005 5 8 0.6892 2.7627 0.0068 6 8 2.7845 3.4974 -0.0060 7 6 2.2732 4.8564 -0.0056 8 1 1.3150 4.8840 0.5132 9 6 2.0861 5.3312 -1.4480 10 6 3.2517 5.7610 0.6981 11 1 4.1666 5.3552 1.1041 12 6 2.9796 7.1068 0.8228 13 7 1.8658 7.6010 0.3280 14 14 4.1928 8.2283 1.6945 15 1 5.3588 7.4328 2.1559 16 1 4.6540 9.2831 0.7564 17 1 3.5305 8.8607 2.8635 18 7 3.5996 0.6783 -0.0065 19 7 3.6312 -0.6088 -0.0052 20 7 2.3121 -1.0840 0.0027 21 6 1.9068 -2.4269 0.0066 22 6 0.7641 -2.8057 0.6983 23 6 0.3684 -4.1290 0.7060 24 6 1.1074 -5.0779 0.0204 25 9 0.7183 -6.3717 0.0290 26 6 2.2461 -4.7015 -0.6759 27 9 2.9660 -5.6285 -1.3450 28 6 2.6440 -3.3769 -0.6863 29 1 -0.3634 0.0027 1.0277 30 1 -0.3634 0.8887 -0.5161 31 1 -0.3634 -0.8912 -0.5116 32 1 1.7018 6.3513 -1.4477 33 1 3.0443 5.3036 -1.9669 34 1 1.3783 4.6769 -1.9569 35 1 1.6741 8.5479 0.4160 36 1 0.1866 -2.0664 1.2332 37 1 -0.5181 -4.4238 1.2479 38 1 3.5309 -3.0832 -1.2281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842717598.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:43 Heat of formation + Delta-G solvation = -64.471170 kcal Electronic energy + Delta-G solvation = -27759.072452 eV Core-core repulsion = 23239.757856 eV Total energy + Delta-G solvation = -4519.314597 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.69213 -49.76417 -43.82162 -41.10715 -40.29381 -37.65759 -36.00177 -35.29250 -33.85935 -32.18080 -31.71071 -30.66562 -29.20577 -27.44116 -25.66259 -25.44126 -24.36693 -23.20721 -22.23568 -21.49728 -19.97873 -19.06570 -18.81386 -18.44091 -18.17752 -17.67514 -17.61531 -17.44004 -16.85335 -16.45712 -16.35815 -16.15871 -15.79638 -15.58269 -15.25344 -14.96448 -14.78291 -14.42261 -14.22184 -14.08771 -13.93269 -13.79023 -13.48059 -13.25183 -13.18962 -12.96741 -12.80429 -12.75899 -12.40888 -12.37628 -12.14956 -11.99678 -11.59975 -11.56165 -10.98300 -10.60665 -10.53702 -10.38275 -9.83422 -8.28034 -6.43536 -0.94580 -0.34884 0.08101 0.29963 0.57354 1.42570 1.43449 1.56725 1.79714 1.87082 1.99721 2.40494 2.48728 2.85968 3.00348 3.02726 3.21028 3.29943 3.52632 3.54398 3.56952 3.75547 4.13699 4.29254 4.42720 4.52319 4.53551 4.59615 4.61228 4.66398 4.80883 4.83760 4.84447 4.96999 5.13920 5.24848 5.47967 5.49964 5.63181 5.86980 6.04930 6.49601 6.62828 6.90785 7.27147 8.79843 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.002174 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.859507 B =12874.278953 C =13243.801489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.105 4.105 4 C 0.541 3.459 5 O -0.521 6.521 6 O -0.352 6.352 7 C 0.218 3.782 8 H 0.021 0.979 9 C -0.143 4.143 10 C -0.549 4.549 11 H 0.061 0.939 12 C 0.020 3.980 13 N -0.913 5.913 14 Si 0.980 3.020 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.272 1.272 18 N -0.197 5.197 19 N -0.071 5.071 20 N -0.312 5.312 21 C 0.132 3.868 22 C -0.082 4.082 23 C -0.079 4.079 24 C 0.080 3.920 25 F -0.125 7.125 26 C 0.078 3.922 27 F -0.129 7.129 28 C -0.111 4.111 29 H 0.129 0.871 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.272 0.728 36 H 0.183 0.817 37 H 0.202 0.798 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 -26.796 0.266 27.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.241 4.241 4 C 0.385 3.615 5 O -0.411 6.411 6 O -0.267 6.267 7 C 0.166 3.834 8 H 0.039 0.961 9 C -0.201 4.201 10 C -0.586 4.586 11 H 0.079 0.921 12 C -0.180 4.180 13 N -0.551 5.551 14 Si 0.803 3.197 15 H -0.193 1.193 16 H -0.196 1.196 17 H -0.197 1.197 18 N -0.071 5.071 19 N -0.050 5.050 20 N -0.092 5.092 21 C 0.041 3.959 22 C -0.102 4.102 23 C -0.098 4.098 24 C 0.059 3.941 25 F -0.103 7.103 26 C 0.057 3.943 27 F -0.108 7.108 28 C -0.131 4.131 29 H 0.147 0.853 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.200 0.800 37 H 0.219 0.781 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.457 -26.915 0.200 27.680 hybrid contribution 0.135 0.699 -0.072 0.715 sum -6.322 -26.216 0.128 26.968 Atomic orbital electron populations 1.21235 0.80788 1.07161 1.07164 1.22404 0.97670 0.84015 0.93349 1.20194 0.89730 0.92712 1.21443 1.19710 0.84117 0.85108 0.72614 1.90747 1.17543 1.84696 1.48111 1.86635 1.39995 1.18336 1.81780 1.20482 0.95073 0.72728 0.95164 0.96089 1.22003 0.99309 1.02864 0.95889 1.21290 1.06221 0.93172 1.37951 0.92102 1.25741 0.97653 0.98697 0.95885 1.69992 1.25123 1.14695 1.45248 0.85176 0.78346 0.77925 0.78208 1.19328 1.19584 1.19729 1.74781 1.19857 1.04051 1.08429 1.82108 0.96312 1.02796 1.23758 1.47538 1.06329 1.05332 1.49982 1.17436 0.97967 0.78545 1.01969 1.21446 0.94164 0.97780 0.96844 1.21322 1.01074 0.89571 0.97832 1.17988 0.94705 0.80331 1.01079 1.91577 1.90161 1.33776 1.94826 1.17345 0.92471 0.86356 0.98121 1.91564 1.76733 1.64302 1.78152 1.20762 1.02007 0.90113 1.00265 0.85326 0.88218 0.85975 0.89626 0.94124 0.95144 0.91866 0.79985 0.78064 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 8.05 71.23 0.57 -0.98 16 2 C 0.16 3.94 6.85 41.71 0.29 4.22 16 3 C -0.10 -3.73 7.02 40.79 0.29 -3.45 16 4 C 0.54 23.61 7.93 70.22 0.56 24.17 16 5 O -0.52 -22.80 13.99 19.76 0.28 -22.52 16 6 O -0.35 -18.10 9.87 -56.72 -0.56 -18.66 16 7 C 0.22 12.12 2.56 29.85 0.08 12.20 16 8 H 0.02 1.27 7.16 -2.39 -0.02 1.26 16 9 C -0.14 -7.39 9.33 71.98 0.67 -6.72 16 10 C -0.55 -31.88 8.90 25.60 0.23 -31.65 16 11 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 12 C 0.02 1.12 5.30 84.65 0.45 1.57 16 13 N -0.91 -51.82 11.32 21.44 0.24 -51.57 16 14 Si 0.98 43.48 29.54 68.60 2.03 45.51 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 N -0.20 -7.40 12.39 -50.02 -0.62 -8.02 16 19 N -0.07 -2.21 13.57 37.02 0.50 -1.71 16 20 N -0.31 -7.12 3.75 -175.13 -0.66 -7.78 16 21 C 0.13 1.95 6.32 38.07 0.24 2.19 16 22 C -0.08 -0.56 8.36 22.39 0.19 -0.37 16 23 C -0.08 -0.33 10.02 22.29 0.22 -0.11 16 24 C 0.08 0.82 7.31 22.42 0.16 0.98 16 25 F -0.13 -1.58 17.18 44.97 0.77 -0.80 16 26 C 0.08 1.09 7.30 22.39 0.16 1.26 16 27 F -0.13 -2.25 17.18 44.97 0.77 -1.48 16 28 C -0.11 -1.68 9.76 22.42 0.22 -1.46 16 29 H 0.13 1.23 7.80 -2.38 -0.02 1.21 16 30 H 0.10 2.02 6.45 -2.38 -0.02 2.00 16 31 H 0.12 0.81 6.98 -2.39 -0.02 0.79 16 32 H 0.09 4.68 6.07 -2.38 -0.01 4.67 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 36 H 0.18 0.36 6.19 -2.91 -0.02 0.34 16 37 H 0.20 -0.62 8.06 -2.91 -0.02 -0.64 16 38 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -73.55 344.27 8.22 -65.33 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.14 Total: -0.14 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 4.32 Total: 1.85 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -0.53 Total: -69.07 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.28 Total: -41.19 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 1.55 Total: -2.28 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -73.55 8.22 -65.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842717598.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.854 kcal (2) G-P(sol) polarization free energy of solvation -73.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds