Wall clock time and date at job start Tue Mar 31 2020 19:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36703 * 126.60046 * 2 1 4 4 C 1.47365 * 125.77982 * 0.02562 * 3 2 1 5 5 O 1.21516 * 120.00298 * 0.31832 * 4 3 2 6 6 O 1.34755 * 120.00241 * 180.32180 * 4 3 2 7 7 C 1.45198 * 117.00525 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.46978 * 330.00074 * 7 6 4 9 9 C 1.53001 * 109.47009 * 89.99851 * 7 6 4 10 10 C 1.50699 * 109.47621 * 209.99926 * 7 6 4 11 11 H 1.08001 * 119.99550 * 359.97438 * 10 7 6 12 12 C 1.37869 * 120.00458 * 180.02562 * 10 7 6 13 13 N 1.31522 * 119.99994 * 359.97438 * 12 10 7 14 14 Si 1.86794 * 120.00547 * 180.02562 * 12 10 7 15 15 H 1.48504 * 109.46731 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47356 * 119.99702 * 14 12 10 17 17 H 1.48502 * 109.47388 * 239.99929 * 14 12 10 18 18 N 1.34453 * 108.44236 * 180.31045 * 3 2 1 19 19 N 1.28751 * 109.56366 * 359.73689 * 18 3 2 20 20 N 1.35019 * 126.60613 * 179.87155 * 2 1 3 21 21 C 1.40274 * 126.60768 * 359.96263 * 20 2 1 22 22 C 1.38845 * 120.02441 * 324.94028 * 21 20 2 23 23 C 1.38115 * 119.99928 * 180.25490 * 22 21 20 24 24 C 1.38443 * 120.06782 * 359.79067 * 23 22 21 25 25 F 1.35101 * 119.97013 * 179.97438 * 24 23 22 26 26 C 1.38676 * 120.05965 * 359.96058 * 24 23 22 27 27 F 1.35100 * 120.00256 * 180.02562 * 26 24 23 28 28 C 1.38316 * 119.99634 * 0.02562 * 26 24 23 29 29 H 1.09003 * 109.46710 * 270.12636 * 1 2 3 30 30 H 1.08991 * 109.47355 * 30.12909 * 1 2 3 31 31 H 1.09002 * 109.46826 * 150.13369 * 1 2 3 32 32 H 1.08999 * 109.47069 * 60.00279 * 9 7 6 33 33 H 1.08999 * 109.46936 * 180.02562 * 9 7 6 34 34 H 1.09006 * 109.47025 * 300.00294 * 9 7 6 35 35 H 0.96992 * 120.00465 * 179.97438 * 13 12 10 36 36 H 1.07994 * 120.00198 * 0.02844 * 22 21 20 37 37 H 1.08000 * 119.96481 * 179.77019 * 23 22 21 38 38 H 1.08002 * 120.03023 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3221 1.0975 0.0000 4 6 1.8761 2.5020 0.0005 5 8 0.6892 2.7626 0.0069 6 8 2.7843 3.4974 -0.0061 7 6 2.2730 4.8564 -0.0057 8 1 1.3094 4.8822 -0.5144 9 6 2.1012 5.3362 1.4369 10 6 3.2439 5.7587 -0.7229 11 1 4.1544 5.3515 -1.1371 12 6 2.9704 7.1041 -0.8492 13 7 1.8618 7.6000 -0.3443 14 14 4.1734 8.2224 -1.7388 15 1 5.3340 7.4251 -2.2108 16 1 3.4977 8.8506 -2.9024 17 1 4.6453 9.2805 -0.8099 18 7 3.5997 0.6785 -0.0069 19 7 3.6313 -0.6087 -0.0056 20 7 2.3122 -1.0839 0.0024 21 6 1.9071 -2.4268 0.0062 22 6 0.7647 -2.8060 0.6983 23 6 0.3692 -4.1293 0.7060 24 6 1.1084 -5.0781 0.0205 25 9 0.7201 -6.3721 0.0298 26 6 2.2469 -4.7015 -0.6759 27 9 2.9671 -5.6283 -1.3449 28 6 2.6452 -3.3770 -0.6856 29 1 -0.3633 0.0023 1.0277 30 1 -0.3633 0.8887 -0.5158 31 1 -0.3633 -0.8912 -0.5118 32 1 3.0649 5.3105 1.9456 33 1 1.7170 6.3563 1.4372 34 1 1.3989 4.6836 1.9557 35 1 1.6695 8.5466 -0.4328 36 1 0.1874 -2.0668 1.2337 37 1 -0.5174 -4.4241 1.2477 38 1 3.5320 -3.0831 -1.2275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842717599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:46 Heat of formation + Delta-G solvation = -45.646217 kcal Electronic energy + Delta-G solvation = -27758.911235 eV Core-core repulsion = 23240.412949 eV Total energy + Delta-G solvation = -4518.498286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.08425 -49.15251 -42.71602 -39.79931 -39.22935 -35.86765 -35.02939 -33.25002 -32.90566 -31.51058 -30.10891 -29.52250 -28.17889 -25.32475 -24.73955 -24.35970 -23.52205 -21.87202 -21.03749 -19.98024 -18.87943 -18.40346 -17.83281 -17.22162 -16.97626 -16.67782 -16.32731 -16.10811 -15.54433 -15.48442 -15.20758 -14.88583 -14.79126 -14.60699 -14.42540 -14.12352 -13.69131 -13.35720 -13.22504 -13.02627 -12.74059 -12.34765 -12.20600 -12.06979 -11.86761 -11.38837 -11.25550 -11.09131 -11.04013 -10.84074 -10.35855 -10.28093 -9.95188 -9.84303 -9.60525 -9.45643 -9.08414 -8.90719 -8.49375 -6.18435 -4.24431 -0.22562 0.17356 1.01383 1.50507 1.64928 2.51692 3.04591 3.25254 3.29390 3.34086 3.40668 3.43821 3.57423 3.74971 3.88748 4.03362 4.20579 4.32626 4.35428 4.50040 4.74127 4.92571 4.99422 5.08260 5.10861 5.15271 5.16145 5.32248 5.48361 5.65349 5.81270 5.92218 6.25223 6.60228 6.87614 6.88096 7.07962 7.55768 7.69533 7.73237 7.89970 8.12100 8.54635 8.87062 9.40789 10.89196 Molecular weight = 337.10amu Principal moments of inertia in cm(-1) A = 0.030049 B = 0.002202 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.595156 B =12710.962221 C =13313.093107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.130 3.870 3 C -0.066 4.066 4 C 0.544 3.456 5 O -0.512 6.512 6 O -0.333 6.333 7 C 0.215 3.785 8 H 0.050 0.950 9 C -0.155 4.155 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.912 3.088 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.160 5.160 19 N -0.060 5.060 20 N -0.329 5.329 21 C 0.162 3.838 22 C -0.102 4.102 23 C -0.102 4.102 24 C 0.075 3.925 25 F -0.121 7.121 26 C 0.091 3.909 27 F -0.117 7.117 28 C -0.110 4.110 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.101 0.899 34 H 0.017 0.983 35 H 0.266 0.734 36 H 0.156 0.844 37 H 0.162 0.838 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -25.082 2.260 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.003 4.003 3 C -0.202 4.202 4 C 0.385 3.615 5 O -0.402 6.402 6 O -0.247 6.247 7 C 0.163 3.837 8 H 0.067 0.933 9 C -0.213 4.213 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.739 3.261 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.034 5.034 19 N -0.038 5.038 20 N -0.109 5.109 21 C 0.070 3.930 22 C -0.123 4.123 23 C -0.121 4.121 24 C 0.055 3.945 25 F -0.099 7.099 26 C 0.070 3.930 27 F -0.096 7.096 28 C -0.131 4.131 29 H 0.117 0.883 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.174 0.826 37 H 0.180 0.820 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.775 -25.152 2.242 25.699 hybrid contribution -0.268 0.424 -0.506 0.712 sum -5.043 -24.728 1.735 25.296 Atomic orbital electron populations 1.20963 0.84066 1.06170 1.05028 1.21964 0.96311 0.85366 0.96665 1.20484 0.88668 0.93713 1.17295 1.19249 0.84488 0.84362 0.73364 1.90773 1.17509 1.84257 1.47620 1.86658 1.38816 1.18505 1.80719 1.20769 0.96661 0.71344 0.94954 0.93265 1.22178 0.99094 1.03652 0.96392 1.21074 1.06539 0.92088 1.35927 0.91060 1.24875 0.95871 0.97608 0.95623 1.69901 1.24085 1.13977 1.44869 0.86209 0.80710 0.80042 0.79147 1.19396 1.20774 1.20715 1.74823 1.18905 1.02743 1.06946 1.82220 0.94361 1.03859 1.23399 1.47467 1.07549 1.04113 1.51802 1.17102 0.96084 0.80325 0.99523 1.21138 0.95848 0.96774 0.98509 1.20950 1.00836 0.90960 0.99387 1.17760 0.95148 0.80132 1.01509 1.91578 1.90254 1.33218 1.94855 1.17260 0.91732 0.86731 0.97270 1.91594 1.76248 1.63996 1.77717 1.20860 1.02186 0.89856 1.00156 0.88343 0.86250 0.90071 0.94266 0.88084 0.96441 0.92460 0.82615 0.81999 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 8.05 36.01 0.29 -0.65 16 2 C 0.13 1.69 6.85 -81.74 -0.56 1.13 16 3 C -0.07 -1.15 7.02 -83.56 -0.59 -1.74 16 4 C 0.54 11.46 7.93 34.44 0.27 11.73 16 5 O -0.51 -10.95 13.99 -19.28 -0.27 -11.22 16 6 O -0.33 -8.16 9.87 -40.64 -0.40 -8.56 16 7 C 0.21 5.73 2.56 -27.88 -0.07 5.66 16 8 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 9 C -0.16 -3.90 9.33 37.16 0.35 -3.55 16 10 C -0.52 -14.61 8.90 -34.44 -0.31 -14.92 16 11 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 12 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 13 N -0.89 -24.99 11.32 55.43 0.63 -24.37 16 14 Si 0.91 21.17 29.54 -169.99 -5.02 16.14 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 N -0.16 -2.90 12.39 32.84 0.41 -2.49 16 19 N -0.06 -0.92 13.57 60.35 0.82 -0.10 16 20 N -0.33 -3.98 3.75 -6.70 -0.03 -4.01 16 21 C 0.16 1.40 6.32 -83.57 -0.53 0.88 16 22 C -0.10 -0.58 8.36 -39.40 -0.33 -0.91 16 23 C -0.10 -0.47 10.02 -39.55 -0.40 -0.86 16 24 C 0.08 0.51 7.31 -39.34 -0.29 0.22 16 25 F -0.12 -0.93 17.18 2.25 0.04 -0.89 16 26 C 0.09 0.71 7.30 -39.39 -0.29 0.43 16 27 F -0.12 -1.06 17.18 2.25 0.04 -1.02 16 28 C -0.11 -0.90 9.76 -39.35 -0.38 -1.29 16 29 H 0.10 0.68 7.80 -51.93 -0.41 0.28 16 30 H 0.12 1.33 6.45 -51.93 -0.33 1.00 16 31 H 0.08 0.48 6.98 -51.93 -0.36 0.12 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.16 0.62 6.19 -52.49 -0.33 0.29 16 37 H 0.16 0.29 8.06 -52.49 -0.42 -0.13 16 38 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 344.28 15.07 5.19 5.19 Total: -1.00 -31.97 344.28 -4.87 -36.84 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.35 Total: -3.24 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.92 Total: -2.26 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 1.83 Total: -30.97 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.67 Total: -19.78 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.08 Total: -1.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.97 -4.87 -36.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842717599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.810 kcal (2) G-P(sol) polarization free energy of solvation -31.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds